RNA id: XM_036941314.1


Basic Information

Item Value
RNA id XM_036941314.1
length 2002
RNA type mRNA
GC content 0.42
exon number 2
gene id tmem100a
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 47468012 ~ 47471205 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGCCTGCTTTTGGTTCACCCCACCCCCATAGCCACCGATATTCTACAAACGTGCTTGCAATGCAAGAAGATGGCAGTCAAACAGTCGTTTTCTTACACAGGAGGAAACGCACAGGGGACATCCGATGAATGGGAGTCAAATTCCAACACAGCGTTTACGGTGCTGTAGACTGGCTGAGCGAAGTGGAGAGTGAAACTGTGTTCTGGACCTACACATTGAATCTGGCTTATAATTTAATGTACGGTACATAAAGACGGAGGGGAGTCCCACTTGTGTCTGCTTTTGAAAGTATACGGAGTTACTGGAATACAAAAGCGTATTACAGTCCATGTTTTATTCATCGATGGGCAAAACCACATTTTAAACGGTGCGGGCATGGAAAATGCGTGCAAGATTGGGACACGCTGACAGAACAACCTCAGGATATAAAAAGTGAAGACCCATCTGTGGTTAAAGTGAGGATCCATCTGTGGTTGGAAAGAAGCACAACTTTGATGCTGGATCCTGCGATGCCAGAGGAACCCAGCAAAGACCCCATGACAGTGCCAGCAGCCCCAGAAAGAGCTGTCATGGAGAAGGCCAACATCAATGACCACACTCCGACTGTGACTATAATAGCTATCCCTTTGGTCACTGAAATCCAACTGAACGCGGCAACAGGTGGTGCAGAACTCTCCTGCTATCGCTGCACAGTGCCGTTTGGTGTGGTCATTCTCATTGCCGGTATTGTGGTCACTTCTGTGGCCTACAGCTTCAACTCACATGGGTCCACCATCTCTTACTTTGGGCTGGTGCTACTATCTGCTGGACTGGTGCTATTGGCGCTAAGTGCGGTATGCTGGAAGATGAGacttgagagaaagaaggagaggcgGAGGGAAAGCCAAACTGCATTGGTCGCAAACCAGAGGAGCATCTTTGCATGAAGGGAAAGACTGATCATCAGGAGAGAAATAAGTCTGTGATATGTTTGGGTGCGAGGCGAAACAGAGGTAGGGGTTAATTTGAAAGCAGAGTGGAGACAGCTGTATCCAGATGTTTTCATGACTGACCAACGTCTGTGGTGGGTCGTTGACCTGCAAGGCTTTGACCTCAGACTGTCTCTAGGCTAAGCAAGTCAAAACGTCTTAGCTTTCATTGAAGTTGTTGGGTTTTTAATCTGTCAAACAGACTGGTCACATCTGGGAAGCTGGGCAGACAGCCAAACTGAATGTATCAAAATTAAGACAAATTACCACTGTACAAAGCAATGGAGAGGATGTTTCCCATTAATCTACTGTTGCATCTGGTGTCTTAGATTTACTGGGAGGGATAGTGGTCTGAAAGGAGGGGGACATGGGGAAATCCAGAACAATGAATCATGCTTCATTTACCATGTTTTAGGCATAACATCTCTCATAAAGTCTGATTGTTCCTTTTCATTTCACACATAATTATGTTCAATTACCTGACATGGGAATATGGTACTTACATGTAAATATGTAGTGATATATATTGGCATTATGGGGACACAAAAACgtgttgtttttgtttgatgtTTATTATCGTATTCTCTGAAACAAGTCGAGCTCAGAGATAAAAGTCAATTAGATGTCACACAGTAATTATGTATAGTACCTATGATGTACCTATGATGTCATAGGTAGTATTGCATTATGAGGGAATATGATTATTGACTAAATATAACTTACATCGAATTAACCTTTATTAACTATTCTCTGTAAACACTGTTCCACACCATGACTAACATGGTGTTCTATGTAACTATGACAACAAGATTCTTTGGAATTACTAGCATCTTGCCACAGTCTTTCTTGTTGTCACTACAGTACTTGCCATTGTCAGTAAATATATTTCATATGTTGAGCGATATGAAATGTTGTAGTATTTTATTCCACTTTAATATAATCATTTTTATGTATGACTTCTCTGTTAACAGTACATCAATTGTTAATAGGTTATAGTGAGGTTTAATAAACTCTCATCCATATTTAAACATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1347440 lncRNA upstream 9317 47458463 ~ 47458695 (+) True G1181587
TU1347439 lncRNA upstream 9600 47458193 ~ 47458412 (+) True G1181586
TU1347432 lncRNA upstream 20399 47446992 ~ 47447613 (+) True G1181579
TU1347423 lncRNA upstream 22090 47445554 ~ 47445922 (+) True G1181572
TU1347420 lncRNA upstream 24304 47443391 ~ 47443708 (+) True G1181569
TU1347481 lncRNA downstream 35066 47506271 ~ 47506726 (+) True G1181611
TU1347482 lncRNA downstream 36290 47507495 ~ 47507774 (+) True G1181612
TU1347476 lncRNA downstream 37746 47508951 ~ 47512098 (+) True G1181606
TU1347485 lncRNA downstream 52019 47523224 ~ 47523453 (+) True G1181615
TU1347486 lncRNA downstream 52657 47523862 ~ 47524063 (+) True G1181616
XM_036941313.1 mRNA upstream 57690 47403774 ~ 47410322 (+) False LOC110486592
XM_021558312.2 mRNA upstream 57690 47403805 ~ 47410322 (+) False LOC110486592
XM_021558311.2 mRNA upstream 67252 47395330 ~ 47400760 (+) True LOC110486591
XM_036939758.1 mRNA upstream 645034 46818538 ~ 46822978 (+) True LOC118938083
XM_036942626.1 mRNA upstream 651013 46816007 ~ 46816999 (+) True LOC118938555
XM_021558316.2 mRNA downstream 11033 47482238 ~ 47505989 (+) False LOC110486595
XM_021558317.2 mRNA downstream 16878 47488083 ~ 47504809 (+) False LOC110486595
XM_036941315.1 mRNA downstream 16937 47488142 ~ 47504809 (+) True LOC110486595
XM_021558334.2 mRNA downstream 359716 47830921 ~ 47832929 (+) False LOC110486605
XM_036941323.1 mRNA downstream 359716 47830921 ~ 47832931 (+) False LOC110486605
TU1347316 other upstream 93535 47374163 ~ 47374477 (+) True G1181472
TU1345717 other upstream 1131734 46331718 ~ 46336278 (+) True LOC110485193
TU1345745 other upstream 1194411 46239144 ~ 46273601 (+) True G1180047
TU1345697 other upstream 1291450 46174028 ~ 46176562 (+) False LOC118936304
TU1347506 other downstream 78074 47549279 ~ 47549548 (+) True G1181636
TU1347905 other downstream 271156 47742361 ~ 47743064 (+) True G1181955
TU1348132 other downstream 648408 48119613 ~ 48122575 (+) True G1182153
TU1348348 other downstream 1084809 48556014 ~ 48561624 (+) True G1182354
TU1348583 other downstream 1475544 48946749 ~ 48947969 (+) True G1182541

Expression Profile