RNA id: XR_002468287.2


Basic Information

Item Value
RNA id XR_002468287.2
length 1495
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC110487551
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 48033192 ~ 48037545 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTCAACATGGTGCCTTTCCAGCAAACAAAAAGTAGGATAATGCATGAAGAAATTATGCGGAAAAACACGAGGCCTCCAAACGTAAAAATAAAGCCCAGAGTGAGACACTGAAGACCAACACTGAGGCCATCACAGATCCAAACACAGACCCCAGTACTGTCTCGTACCCTGGAACACCTATCAACCAGGACATAGTAAaggagaagaaaaagaagagGGCTATTATACTGACCAAAGATGAGAAGACCATGGCCGCCTTAGAGAAAGACCAGACGGAGTATGAGCGGTTTCTGGATCACATGACTCTCTGGATCCAGGAGCACCAGGAACAGGCAGTAGAGCTGTTCAGCCTGTGTGATACAGACAGCACTGGTACCATCGGCCCGAGGACTTTGAGCAGGGTAATCCATCCCTCTTCTGGTCTGTTACACCCTCATTCTTTCATCTGGGGCTCATGGCTGCAATTAAGGTATGTCAAAGGATTACCTCATAATGAGTCCAAATACTCTTTTCAATGCTAGTAGTTCACTCTAGCATGTTTCAGTGAGTTCCATTTGGAAATGTTGTGATGATTCTTTCCACTGTAGACCCCTTGAAAAGTAAGGTCAAATGTAACTGGCTGTTCTCAGCTCCTTTAAATGTAACATAAAGAAAACCACTGTGGCAAGCGATTACAAAACATTTTATGAGACTCCTGAGTCAGTCCTATCTGAATGCCACTGACTGTGTGGGGTTTTATTGAAGATATATAAGTGCTTATGGTCAGTGTTCTGATTCAGACTGCTTAGAATGCAAGCACTTGTTCATTTCCTGGAGAGCTTGTAAGTGGCCCTCTCACCCCCCACAGATAACAGCTCGTCCtgggaaacaaaaacagaacaatGTTCCTTTTGTCCTTCAGGCCCCAGACATTGAGTTTACTGTAAGTTTCTTCAGAAGAAAACATTAATCCTTCAGAAAGTTGGAGCCAAGGAGAACCAAGGAGCACAGTCAGCCTTAAGCCTTAAATCCATCATTCAGGCctcttttatttacattttatttcacctttatttaactcttgCCTAATGCCTCTGTGGATAGAGCCATTTAATGGCTGATTCACTGGAGAGATAGCATCATCATTGGTATAAGAATCACTATCTAGGGGATTAGCACTTTATAATTGACATATAAAAGCCACAATTTCTGTAGATTGTCTCTGGTATAAAAAGCAATAAGTTCAAATTGAAAATCCCTTACATCCTTAGGTATGACAGATTTGGGGATTCCATGTCTGCAATTTCAGCTGGATCTGCTGCCACAGGTACTGAGGAGAGGCAACGATGGGGAGATTGATTACAGGGACATGAGCAACCAACTACAGAGAGTAATGTAAAGCAAAATCAGCATTTTAtactagtcaaatcaaatcaaattgtatttgtcacatgcgccgaatacaacaggtgtagacattacagtgaaatgcgtacttacaagccctaaccaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1348088 lncRNA upstream 788 48032178 ~ 48032404 (+) True G1182110
TU1348085 lncRNA upstream 7418 48025184 ~ 48025774 (+) True G1182107
TU1348072 lncRNA upstream 29688 47999598 ~ 48003504 (+) True G1182094
TU1347939 lncRNA upstream 200392 47830848 ~ 47832800 (+) False LOC110486605
TU1347940 lncRNA upstream 200392 47831282 ~ 47832800 (+) True LOC110486605
TU1348103 lncRNA downstream 55463 48093008 ~ 48094934 (+) True LOC110486620
TU1348108 lncRNA downstream 70231 48107776 ~ 48108141 (+) True G1182130
TU1348163 lncRNA downstream 129520 48167065 ~ 48168051 (+) True G1182182
TU1348177 lncRNA downstream 150294 48187839 ~ 48188082 (+) True G1182196
TU1348185 lncRNA downstream 159263 48196808 ~ 48197030 (+) True G1182204
XM_021558358.2 mRNA upstream 41185 47984789 ~ 47992007 (+) False LOC110486616
XM_021558360.2 mRNA upstream 41185 47985236 ~ 47992007 (+) True LOC110486616
XM_021558354.2 mRNA upstream 48702 47962014 ~ 47984490 (+) True LOC110486615
XM_021558351.2 mRNA upstream 50849 47962014 ~ 47982343 (+) False LOC110486615
XM_036941328.1 mRNA downstream 38436 48075981 ~ 48091316 (+) True LOC110486621
XM_036939759.1 mRNA downstream 56866 48094411 ~ 48102030 (+) False LOC110486620
XM_021556162.2 mRNA downstream 81771 48119316 ~ 48135524 (+) False rac2
NM_001165150.1 mRNA downstream 81886 48119431 ~ 48136319 (+) True rac2
XM_021558369.2 mRNA downstream 110854 48148399 ~ 48166866 (+) True sstr3
TU1347905 other upstream 290128 47742361 ~ 47743064 (+) True G1181955
TU1347506 other upstream 483644 47549279 ~ 47549548 (+) True G1181636
TU1347462 other upstream 563180 47468116 ~ 47470012 (+) False tmem100a
TU1347459 other upstream 563180 47468201 ~ 47470012 (+) True tmem100a
TU1347316 other upstream 658715 47374163 ~ 47374477 (+) True G1181472
TU1348132 other downstream 82068 48119613 ~ 48122575 (+) True G1182153
TU1348348 other downstream 518469 48556014 ~ 48561624 (+) True G1182354
TU1348583 other downstream 909204 48946749 ~ 48947969 (+) True G1182541
TU1348602 other downstream 940455 48978000 ~ 48981403 (+) True G1182555
TU1348645 other downstream 1026240 49063785 ~ 49065142 (+) True G1182595

Expression Profile