RNA id: XM_021558383.2


Basic Information

Item Value
RNA id XM_021558383.2
length 3343
RNA type mRNA
GC content 0.53
exon number 16
gene id LOC110486632
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 48475804 ~ 48486385 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAATAGCTAGGAAGACATTTAGGGGCGTGAACATATTTCCTGCACTTGATATTTTGTTGTTGAGAAACTTCAGCGCGTTCAGGAGTCAGCTACATTGTCAAGGAGCGCGGACACCTGTAAAGTCACTGAAATAGAGatgCAGAGGTATCTGGTGCTCTGTATGGCCCTGCTGGCCCAGGTCTCTGCTGATGACTGCCTAGGCGGAGAGGCGTGTGAGGAGGGCAACACCTGCTGCAAGGGCCCCTCCGATGGCTATGAATGTTGCCCAATGtatcagTCTTTCAGAATGATCAGTGCATATGCCGGGGATGAGGATGATAACATCTGCCCTGACAAGTCCCACTGCCCCGAAGAGTTCTCCTGTCTGAAGGCCACTACAGGCTATGGTTGCTGTCCCGTTGCTCATGCTGTGCCTTGCTCTGATGGGAAACATTGCTGTCCTGAAGGCCACCAGTGCAGCACAGACTGCAGCTCCTGCATCAAACAGACAGAGCCTGTTGTTGCAGTGATGTGCAGTGACAGAGAATCTGAGTGCCCAGTGGGAACCACATGCTGTGAGACTCCAGATGGGAGTTGGGGGTGCTGCCCCATGTCCAAGGCCGTGTGCTGTGAGGATAAGATTCACTGTTGTCCTGAGGGCAGCACCTGTGACATCAAGCAATCCAAGTGTATATCCACTACCAACAAGGAAATGCCCATGTGGGCTAAGTTCCCTGCCCGCAAGAGGGCAGAGTGGGAAAACCAGAATGAAGTTGCCCAAGTGACGACACCTATTCCAGTCACTACCACCTCAGCCAATAGGAGTCCTGCTTCTCTTTGGGAGGGTACTTCTCCACCCTTCATTAGGACAGGAGACGTTCCCTGTGATGAGTCAACGGCCTGTTTGGATGGAACCACATGTTGTAAAACACAGGAAGGAGGATGGGCATGCTGTCCTCTGCCACAGGCAGTTTGCTGCAGTGACTTCGTCCACTGCTGCCCACATGGTAAGAAGTGCAACCAGGCTGCCCAGACGTGTGACGACCCCTCAGGCTCCCCCTCTGAGCCCTGGCTGAAGAAGGTTCCTGCCGTGCCTCGGGAGGGTAAATTGCCAGGAGATGTTACCTGTGACCCCACCCATGTGTGTCCCGACAACACCACCTGCTGCAAGACAGCGTCAGGAGGCTGGGCCTGCTGCCCCTTGCCTGAGgccGTTTGCTGTGAGGACCATGAGCACTGCTGTCCCCATGGCACCACCTGTGACCTGGCTGGCCTCACCTGTGATGGTCCCTCAGGGTCGGAGCCCATGGTGGGGAAGGTGCCAGCTCTCACAACCCTGGCATCTGATCATGAAGAGGCAGCCACAGACCAGCAAGGGGTGCAGGTGGATGACATGGAGCTGCCTACAGAGGATGACAAAGACGTTCCCTGTGATGAGTCAACGGCCTGTTTGGATGGAACCACATGTTGTAAAACACAGGAAGGAGGATGGGCATGCTGTCCTCTGCCACAGGCAGTTTGCTGCAGTGACTTCGTCCACTGCTGCCCACATGGTAAGAAGTGCAACCAGGCTGCCCAGACGTGTGACGACCCCTCAGGCTCCCCCTCTGAGCCCTGGCTGAAGAAGGTTCCTGCCGTGCCTCGGGAGGGTAAATTGCCAGGAGATGTTACCTGTGACCCCACCCATGTGTGTCCTGACAACACCACCTGCTGCAAGACAGCATCAGGAGGCTGGGCCTGCTGCCCCTTGCCTGAGGCTGTTTGCTGTGAGGACCATGAGCACTGTTGCCCCCATGGCAGCACCTGTGACCTGGCTACCCTCACCTGTGATGGTCCCTCCGGGCCAGAGCCGATGGTGGTGAAGGTGCCCACCCTCACAACCCAGGCACCTGATTATGAGGAGGCACCCACAGACCACCAGGGGGTGCAGATGGACGACATGGAGCTGCCTACAGAGGATGATGACAGTGAGGAAGACGAGGAGTTGCACAGGACACGGTGTGACGCCCACACCAGCTGCCCAAAGGACGCTACCTGCTGCTTTATGAAGTCCACCCAGAAATGGGGCTGCTGCCCACTGCCACAGGCAGTGTGCTGTGCTGATGGAGAGCACTGCTGTCCCAAAGACTACATATGTGATATGACCAAGACTTCCTGCTCTAAGGCTGGGGTGGTGATCCCATGGTACAACAAGCTGGCAGCTGAGCCAGATGACAGTGCCTTCACTGCCCCCCTCTCTGTGAAGTGTGACACCCAGAACAGATGCCCTGAAGGCTCCAGCTGCTGCCAACTTTCCACAGGACAGTGGGGCTGCTGCCCCCTGCGCAAGGCTGTGTGCTGTGCAGATGAGGAGCACTGCTGTCCACAGGGCTACAGCTGTAACATGGGCTCAGGGACTTGCCAGAAGCTAATGTTTCTTCAGTTCCAGACGGTACCCCTAACTCGGGTGTCTGCGCCTGAGCCCCCGACCCCACAGGAGAAGGAAATCCACTGTGGGGGGCCGTTTGTCTGCAATAATGAGGAGACATGCTGCAAGGTCTCCGCCACTACATGGGCCTGCTGTCCCGTTCCAAATGCGGTGTGCTGCAGTGACATGAAGCACTGCTGCACTACAGGCTACACCTGTGGTGAGGGAGGGTCCTGCACCCAGTCCACTGGCTTCAAATGGGACCACTGGCAGGTGTTCTTCTCCAACAAGAAGAGAGCCCTGCGTGTGTGACAACATTGGGCTAGACCCATCACTCCAACCGTTGGAGTGTTAGGCCCACACTCCACCACCAGACACATTGCACTAATGAAGGGACGCAGGAGCTTAATATCACTGTTACAGTATatcaaattgtgttttttacagaggaaaaatggtgtgtgtatatataggaaAGGGAAGTGAAAATAAGTAACATTTTGCGCCATTGGTAGGTGCTTGGAATGTTACTACATTTACTTCAAGAGATACCCATGCTTGCTCATGAACAGAAACTATCAAGGATTTGAAATCACTCCAAAAATTAGATACCAATGTTGAATAATCTTTTAGGGTTGTGGCTCAGGGAAGGATTGGAATGTGATCAAACTAGTTGTAAGATGATATCAAGATTGACACAGAGGAGCATATAAATGACAAGAACTTAGTACTGTTTTACAATGTTTGTTACCTTTTAAACAGGAAAAGTGTTGTGTTTTTTTAGTTGACCATGTGAAGTGCATTGTGCCTCATAGTTTCAGGTATACCTTTGAAATGCCTTTTACATTAGTCTGCCAtatgtaggccatcattgtaaataagaatttgttcttaactgatttgtctagttaaataaaggttaaataaaataaatatgccACCCTGTGGCTGAACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1348308 lncRNA upstream 3133 48469378 ~ 48472671 (+) True G1182317
TU1348309 lncRNA upstream 8396 48464880 ~ 48467408 (+) True G1182318
TU1348322 lncRNA upstream 13650 48454291 ~ 48462154 (+) True G1182331
TU1348299 lncRNA upstream 30194 48421330 ~ 48445610 (+) True G1182308
TU1348262 lncRNA upstream 135704 48339706 ~ 48340100 (+) True G1182275
TU1348328 lncRNA downstream 5679 48492064 ~ 48493495 (+) True LOC110486639
TU1348332 lncRNA downstream 29699 48516084 ~ 48516283 (+) True G1182341
TU1348333 lncRNA downstream 30196 48516581 ~ 48520449 (+) True G1182342
TU1348336 lncRNA downstream 42529 48528914 ~ 48529433 (+) True G1182344
TU1348342 lncRNA downstream 50442 48536827 ~ 48537060 (+) True G1182350
XM_036941342.1 mRNA upstream 114935 48279842 ~ 48360869 (+) True LOC110485200
XM_036941337.1 mRNA upstream 243867 48219979 ~ 48231937 (+) False LOC110486626
XM_021558393.2 mRNA downstream 2060 48488445 ~ 48493519 (+) False LOC110486639
XM_021558394.2 mRNA downstream 2060 48488445 ~ 48493519 (+) False LOC110486639
XM_021558395.2 mRNA downstream 10228 48496613 ~ 48498675 (+) True LOC110486640
XM_021558400.2 mRNA downstream 14126 48500511 ~ 48506208 (+) False ifi35
XM_021558398.2 mRNA downstream 14140 48500525 ~ 48506208 (+) True ifi35
TU1348132 other upstream 353229 48119613 ~ 48122575 (+) True G1182153
TU1347905 other upstream 732740 47742361 ~ 47743064 (+) True G1181955
TU1347506 other upstream 926256 47549279 ~ 47549548 (+) True G1181636
TU1347462 other upstream 1005792 47468116 ~ 47470012 (+) False tmem100a
TU1348348 other downstream 69629 48556014 ~ 48561624 (+) True G1182354
TU1348583 other downstream 460364 48946749 ~ 48947969 (+) True G1182541
TU1348602 other downstream 491615 48978000 ~ 48981403 (+) True G1182555
TU1348645 other downstream 577400 49063785 ~ 49065142 (+) True G1182595
TU1348688 other downstream 628590 49114975 ~ 49118697 (+) True G1182629

Expression Profile