RNA id: XM_021558394.2


Basic Information

Item Value
RNA id XM_021558394.2
length 3727
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC110486639
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 48488445 ~ 48493519 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCAAGATGGCGATGCACCTGCTTCATCGGTGGTAAAAAACGGTGTACATAAACGATAAAACAAAGCGTCGTTTCCAGTTGACAATAACTTTAATATCGGAGGACAACGTTGTCTTTATTACCTTTCAAACATGTCGACAGAGGAACTGTCAACCTCGGACAGCGAAGCTGCCTTTGCTGGGGCTGGCGAGCGATGGGCGCCCGTCGGCGCTGTAGCCAGTCCGGAGGATGAGAGCGGGAAGGGAAACGCGGTCGAGCCGAGGAGGAAAGGCTCAGCTGCGTCTGGTGAGACGGAGATGGCCGCAAGATTGAGGAAATTGGAGGACGAACAGGGCCTGCTGAATTCCTCGCTCCTCGCTTTGACATCTCATTTTGCACAAGTGCAGTTCCGCTTGAAGCAGATAGTTCACGCTCCGActgatgagaaggagaggatgCTGGTAGAACTCGAGGAGTTTGCCTTCAAAGGCTGTCCTCACGTTGTGGGATGCAGGCCACAGGATACTCAACAGCTCGAAAACGCGagtgagagggagaagagggagcgtCTGGAGGTCCAGAGGGAGAAGCAGAAGGAGCTCATCGTCCAGCTGAAGACCCAGTTGGATGACCTGGAGCGCTATGCCTACCAGGAGGGCAGCTATGACTCCCTGCCCCAGTCTGTGGTCatggagagacagaagGTAATCATTGACGAGTTGATCAAGAAGCTGGATGTGAACTTCAATGAGGACATAGGGAACCTGACGCCTGAGGAGCTAAGACAGAGAGTGGACGCTGCCATCGCTCAAATAGTCAACCCAGCCAGGGTTAAGGAGCAGCTGGTGGACCAGCTCAAGACCCAGATCAGGGACCTAGAGATGTTCATCAACTTCATCCAGGATGAGGTAGGGAACCCTCTTCTGTCTGATGGTGAACCCAGCCAGCAGCCGAGGACAGCAGGGCCCAACACCAGAGCccctggagggaggaagaaaaTGGACCCAGAGCAggcccagaagatgaggcagacaggCTTGGAGCTGATCCAGCGGGCCCTGGCTGTGCTGCAGATCTTTGCAGTGAGCCAGTTTGGCTGTGCGGCTGGCCACGTTCCCCAGAGCATGTGGTCGCAGGGGGAAGTGGGCCAGGACTACGGCCCTCTGCTGCAGCGTCTGGAGGGGGCTGTAGACCGGGTTCGAGTGCAGGCCTCGTGCAGACAGCCCTCAGTAGATCACGTGGTCAGCTACAACAGCAGCTTGGCCCTGGGGTCCCGTGATGAGCTCACTGCCTCAGTGAGGAAGGAGCTGGCCATGGCTCTGAGAGACCTGCTAGCCCATGGTCTCTACTCCCCCTCCCAGGGCATGAGCCTGGTGCTGGCCCCCATCTCCTGCCTGCTGCCCTACAGACCTGGCCCATCGACCATCCACCCCTGGGAGCTCTTTGTCAAGTACTACCACTCCAAAAATGGCAAGGCCTTCGTGGAGTCGCCTGCCCGCCAACTCTCGCAGTCCTTCAGCCTACCTGTTGCGGGCAATCCGGTCACTGTCACACCCAAGCAGTCTCTGCTCTGGGCCATTCACTCAGTGTTGCTGGAGCACGATCGCTACAAGCGAGGAGCAGACTCAGAGTTCAAGGCTCTGGTATGCATGGCTCTGAATGAGCAGAGGCTAGTGTCATGGCTTAACCTGCTTTGCAAGTCAGGGGCCTTGGTGCACCCGCACTACCAGCACTGGAGCTACATGGCCCAGACAGGCTTCGAGGGAGCCCTGCGCATCCTGGGACGTATCAGCCACCTCAAGTTTAACCTGCCGGTGGACCTGGCTGTGAGGCAGCTCAAGAACATCAAGGATGCCTTCTGAGAAGGGACTGTCGAGAGTCACCCAAAACCATGCTTTCAGCTCACATGGTTACCAGGCCTGATTTAAgagtaaaaaataatacaatcaACTGGCCTTTGAGGACCGGGAGGCATGGCTTGGGTCTTCCTCAAGTGCTGAAATTATAATTGGCATAAAAGATTTGTGCTAATGTTGCTTTATCCGTTTAACTTTAAATTTATCTTGGGTCATTGGGTCAAAACATTTTTGTTAGCATCCTGTCTAAACATGGCATGAATTCCGTGCGAAGCTGTTCAACAAAAATCAAGTGTGCAATGTTGAGATGCATTATATAGCAAATCTGATTTTTATATGGCAAATCTGTAACTAACATTTAAATtatcaatgccccccccccccataaccacACAAAGGGAGCAGCATATCAAGATCTTAATGACTTGTTACATTGCATTATATGGAGCTTGTTGCCTCCCCTTAGGAAACACTTCCTTTATGTGATGTTGTTTGACTTGTCCCTATGGAGATGAGATACAGTAGCTCAGACCTATGCAGATAATATCATGAGGTTGGCCTTTTACAGTAATTCACTACTGTATAATGATTACCTATAGAATGGGTGATCATCAATGTGACCAAATGTATAGTCATTCCCTCCCCATACTCTGTAGTATGGGCAAAAACAGACCAGTATCCTGCACTGTCACTAAACTGTACAATTTGTGTTCTCTACGGAAGAGAATAATATGGGTTACTACAGTTCACATTCACAGAGCATTGCTCCCTGTCTGTGGTTACTCAAAGCTCCACTGTTGTGTTCACAGAAGACGCACACTATTCAATGCACTCAGGTCAAATGAACGTGGCAACAGTGTATGCTCTCACCAATGAATGTACAAGAGAGGTCAAAATTCTAAAGATGTCACAAGTGTTCTGAAAATCAAAATGATAACTCATGCAGCATGTAGTGTCTCTCCGTTGAGAAATAAGCAGAACCTGCCTAACGTGTCTTAAAGGTGGATAACGTAGAGACCCTGTATTAACTGCTGCTTTACTGGTCCAAATGGAAGTGATTcaaaaaattacaaaaatatatatgattTCACTATTTAGCTTATGTAATTACATATTTAATCATCTAATATTTAAGATGATTGTGGGATGTGATCGTTTTCTCTGTTTCTATTCGTTTTTTGAATGGTGAATGAAAACCACTTGAAGTGAAATCTTCCTATTACATGTGAATCACATGGGGTGTATCCTGAAAAGCTGAATGTACAAACCATAGATACTGTTCATTTCCACATGAGTGAAAACTGTTATCATCCCTGGTATGGTTTTTCCAACCCTCATATTAAGGTGTTACCTACTTTGTTACTGGTTAAGTGCTGCTCCCAGACTTTCTGTTCTATTCTTTTATGGTCTATGGTATTGTATTGAGATCTATTTCTATTTTGTTGTATAGTAAATTGCAAATGCCTCAGCCGGACCACTACCAGACTATGCTTGGATCTGGTCTGTGCTTTACTGGTGTGCATCTCCATGTAGTGAATGGGAGGACAGGTTGTCCTACATCGAAAGGGATACTTTGGTTTGCATACTTCTGATGTGTTAGTGTGAATATCAATACCCCCTTCATTTAGCCTGCATTGTtactttttcttcttttttttgcaCTGTGCTCATGTCAAAACTACTGTTAACGCAAACATAGATGCACACATCACAATACTACTACTAAGCAATGTACATTTCTGTATGAAAAATGAGACTTAGTTACTGTCTCTAATTTGTTTTTGCTTTTCTGTGTATACCTTACTGGTCATATTGagaaaaagttatacagctgtttattgtttttgttcaataACTATGAATGTGAGCAAATAAACTATTTCAAAAACCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1348325 lncRNA upstream 9835 48470203 ~ 48478610 (+) True G1182334
TU1348308 lncRNA upstream 15774 48469378 ~ 48472671 (+) True G1182317
TU1348309 lncRNA upstream 21037 48464880 ~ 48467408 (+) True G1182318
TU1348322 lncRNA upstream 26291 48454291 ~ 48462154 (+) True G1182331
TU1348299 lncRNA upstream 42835 48421330 ~ 48445610 (+) True G1182308
TU1348332 lncRNA downstream 22565 48516084 ~ 48516283 (+) True G1182341
TU1348333 lncRNA downstream 23062 48516581 ~ 48520449 (+) True G1182342
TU1348336 lncRNA downstream 35395 48528914 ~ 48529433 (+) True G1182344
TU1348342 lncRNA downstream 43308 48536827 ~ 48537060 (+) True G1182350
TU1348354 lncRNA downstream 70298 48563817 ~ 48564807 (+) True G1182359
XM_021558378.2 mRNA upstream 2060 48475804 ~ 48486385 (+) False LOC110486632
XM_021558381.2 mRNA upstream 2060 48475804 ~ 48486385 (+) False LOC110486632
XM_021558383.2 mRNA upstream 2060 48475804 ~ 48486385 (+) False LOC110486632
XM_021558379.2 mRNA upstream 2060 48476445 ~ 48486385 (+) True LOC110486632
XM_036941342.1 mRNA upstream 127576 48279842 ~ 48360869 (+) True LOC110485200
XM_021558395.2 mRNA downstream 3094 48496613 ~ 48498675 (+) True LOC110486640
XM_021558400.2 mRNA downstream 6992 48500511 ~ 48506208 (+) False ifi35
XM_021558398.2 mRNA downstream 7006 48500525 ~ 48506208 (+) True ifi35
XM_036941349.1 mRNA downstream 38991 48532510 ~ 48540487 (+) False LOC110486644
XM_021558403.2 mRNA downstream 39019 48532538 ~ 48540487 (+) True LOC110486644
TU1348132 other upstream 365870 48119613 ~ 48122575 (+) True G1182153
TU1347905 other upstream 745381 47742361 ~ 47743064 (+) True G1181955
TU1347506 other upstream 938897 47549279 ~ 47549548 (+) True G1181636
TU1347462 other upstream 1018433 47468116 ~ 47470012 (+) False tmem100a
TU1348348 other downstream 62495 48556014 ~ 48561624 (+) True G1182354
TU1348583 other downstream 453230 48946749 ~ 48947969 (+) True G1182541
TU1348602 other downstream 484481 48978000 ~ 48981403 (+) True G1182555
TU1348645 other downstream 570266 49063785 ~ 49065142 (+) True G1182595
TU1348688 other downstream 621456 49114975 ~ 49118697 (+) True G1182629

Expression Profile