RNA id: XM_036941358.1


Basic Information

Item Value
RNA id XM_036941358.1
length 3909
RNA type mRNA
GC content 0.51
exon number 31
gene id LOC110486653
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 48748015 ~ 48796028 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGTACAAATCATAGCTTTGGATGGCAGATCCATGTGTCCGGCCAGAGTTTGAGACAGAGATCATTACCATTACTGTGTGGTTCAGTTCGTTTTTCAAGGCAGAGCCGGAAGGAATTGCGGCCAAGACAGATAAGGTTGCAGCAGCACCTGCTGATAAGGAATTGCCCGATGATGAGACTGTCCAAGGAGGGCAGTCCGAGCTGACCGGACTATTTGTAGAGAGGCCAGAGAGCACTACAGTAATCAAAGGGAAGAACGTCACCTTTGTGGCTAAAGTGGACTCATCTGACCTGCTGAGGAAGCCCAACATGAAATGGCTGAAAGGGAAGTGGCTGGACCTGGGCAGCAAGGCTGGCAAGCACGTGCAGTTTAAAGAGGCCTATGACAGGAActccaagGtctacacatatgagatgagcatcATCAAAGTAGTGGAAGGAGACGCAGGTGGCTACCGTTGTGAGGTCACCTCCAAAGACAAGTGTGACAGCTGTACATTTGAAGTAACAGTGGAAGCCGTACAAGAGGAGCAGCCCGCCAACATCCTGGATTCCTTCAAGCGATCGGGAGATGCAGGAGAGGATGCAGGTGACCTGGACTTCAGTGCCCTCCTCAAAAAAAGgGAAAAAAAGGCGAGGGACGAGCCCAAAGAGGAAGTGGATGTGTGGGAGATCCTGAAGGATGCTAAGCCATGTGACTATGAGAAGATTGCCTTTGACTACGGCATCACAGACCTCAGGGGCCTGCTCAAGAGACTGAAGAAGATGAAGAAGGTGGAACCCAAGAAGAGTGAcgCCTTCCTGAAGAAGCTAGAGCAATGTTACTCTGTGGACAAGGGCAAGAGGACCCAGATGCATGTTGAGCTCCATGACCCCAACGTTCAGGTCAAATGGCTGAAGAACGGAGTGGAGATCAAACCCTCTGCCAAGTATGTGTTTGAGTGCGTGGGCAACAAACGGACACTCACCATCAACAAGTGCAACCTGTCTGACGATGCAGCCTATGAGTGTGTtgtgggagaggagaagagctTCACTGAAGTCTTTGTCAAAGAGCCCCCGGTCACCATCACCAAGCTGCTGGACGATGTGCATGTAGTGGTGGGAGAGAAGGTGGAGTTTGAGTgtgaggtgtcagaggaaggagcCAACGTCAAATGGATGAAAGATGGCGTTGAGCTGACAAAGGATGGGAAGTACAGGATAAAGAAGGATGGGAAGAAACACACTCTGGTCATCAATGAAGCAACCATAGAGGACATCGGAATGTACTATGTTTACACTAATGGGGGAGAATCTAAAGGAGAACTGGAAGTGGAAGCCAAGGAGCTCGAGGTTCTGCAGAGTATAGCTGACCTGTCGGTGAAGGCGTGTGAACAGGCCATGTTCAAGTGTGAGGTGTCTGATGAGAAGGTGGTGGGCAAGTGGTTCAAGGACGGTGTGGAGGTCAAACCCGGCAACCGCATCAAGATGTCACACATCGGAAGGATCCACAAGCTGACGATTGATGATGTGAAGCCGCAGGACGAAGGAAACTACACCTTTGTCCCTGAAGGATACGCACTCTCCCTCTCCGCTAAACTCAACTTCattgAAATCAAGATCGAATATGTTCCACGCCAAGACCCTCCCAAAATCCACCTGGACACTAGTAGCACGGGCAGCAAGAACACCATTGTTGTGGTGGCTGGCAACAAGCTCCGCCTTGATGTGGAGATCACAGGAGAGCCTGCCCCCACTGTGTGCTGGATGAAAGGAGACACTGTGATATCGGAGGCGGAGGGCAGAGTGAGGGTGGAAACCAGGACCACTCTGAGCAGCTTTGTCATTGAGGGGGCGGAGCGGCCAGACGAAGGCCAGTACTCCATCATAGTGACCAACCCAGCCGGAGAGGACAGGGCTGAGCTCACCGTCAAGATTGTTGATGTGCCTAACCCTCCAGAGAACGTCAGATGTATGGGAGTTGGCGAGGACACAGCCACCATTACATGGGATCCCCCCAAATTTGACGGGGGTGCGCCCATCAAAGGCTACCTGATGGAGAGGAAAAAGCAGGGTTCCTCCAGGTGGACCAAGCTGAACTTTGAGGTGTTTGAGTCAACCACGTACGAGGCTAAGAAGATGATTGAGGGTGTTTTTTATGAGATGAGAGTGTTTGCTGTCAACGGGATCGGGATCTCCCAGCCCAGCGGCAACTCAAAGCCCTTCATGCCCATAGcccctacCAGTGAGCCCACTCGTCTGACGGTGGAGGATGTGACAGACAGTACATGTGCCCTGAAGTGGCGTCCTCCAGAGAGGGTTGGAGCAGGGGGCGTTGACGGGTACATAATCGAGTGGTGCAAAGAAGGAGAGGATAACTGGGTAGGAGCCAATAAGGAGCCAGTGGACAAGAACACGTACCGTGTGAAGGGGCTGCCAACAGGAGAGAAGCTCTTGTTCAGAGTGGTGGCTATGAACATCGCTGGACGCAGCCCCCCCTGCATCATGAAACAGTCTGTCATCATCAGAGAGATCATGGAGTACCCAAAGATCCGCCTGCCTCGCCAGCTAAGAACCAAGTTCATCAGGAAAGTGGGCGAGAAGATCAACCTGGTCATCCCCTTCCAGGGAAAGCCTCGCCCCGTGGTCAACTGGCTGAAAGATGGTGAGCCCCTGGAGAATAAGTCGGTGGGCATCCGCACCAGTGACTTTGACACCATCCTGTTCATCCGCTCGGCAGAAAGGGACCACTCTGGGACGTACACCCTGTCTGTCCAGATAGACAACATGCAGGACAAGGCTGACATTCACATCCAGATCGTAGacaagccaGGTCCTCCTATAAATGTGATGGTAACAGATGTGTGGGGCTTCAATGCTGCTCTGGAGTGGAAGCCCCCCAAAGACACAGGCAACACTGATATCACCGGCTACACCATCCAGAAGGCTGACAAGAAGACCCAGGGTTGGTTCACAGTGTATGAGCACAACCGCCGGCCCAGCTGCACAGCGTCTGACCTGGTCATGGGGAACGAGTACTCCTTCCGTGTGTTCAGTGAGAACATCTGTGGCTTGAGCGATGAGGTGGCCTTCAGCAAGAACACTGCCATCATAGGAAaaacagATCTGGAGTACAACAAACCAGCCTTCAAAGAGAAGGACATGAGCAGCTCCCCCAAGTTTACAGCTCCCCTAGTGGACAGGGTTGTTGTTGCAGGCTACAGTACTGCCATCAGCTGTGCTGTCCGGGCCTACCCTaagGCTAAGATAGTGTGGATGAAAAACAAGATGATCATTGGGGAGGATCCTAAATTCTTGATGCAGAACAACCAGGGGGTGTTGACCCTGAACATCAGGAAGCCTGGACAGTTTGACGGGGGCAAGTACTCCTGTAAGGCCATCAACGACCTGGGGGAGGACGAGGTGGAGTGCAGGCTGGAAGTCCGAGTCTTAAAGGAGAAGaaagaaggagacgaggagaagaAATGAGCGACAGTGACCGATAGAAACACCAGAGGATACAGTTCTGCAGGAATCATAGTGGATTATGTATAACAGGATAGACGTGAATAAATATGATTAGAATAAAAAAAACTGGTGATGTTTTCTAAAtatgctctctctatctccctctttctctctttctccctctctctctctttcttcctctctctatccctctctctctcattcttcctctctctatctctctcgttctcacaTCCTCACCAGTGGCATGTCAAATACCATATCGGTAATAACTGAATGAATTATGATAATAACAGACCACTACATTGAGACAAGCTAATTGAGAGTAGTAATAGAGTACCTTAATAATGGCTGAATATTACAGCTCAGAGATGGATTCTTCTTATCTGTGACATGAACCTGTCAGTGCAACACACATAAAACAGTCATTTACCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1348470 lncRNA upstream 22566 48739828 ~ 48740040 (+) True G1182460
TU1348459 lncRNA upstream 37192 48725171 ~ 48725414 (+) True G1182449
TU1348425 lncRNA upstream 97011 48665217 ~ 48665595 (+) True G1182422
TU1348419 lncRNA upstream 100089 48662125 ~ 48662517 (+) True G1182416
TU1348384 lncRNA upstream 139848 48621867 ~ 48622758 (+) True LOC110486647
TU1348525 lncRNA downstream 14432 48810460 ~ 48865525 (+) True G1182493
TU1348532 lncRNA downstream 21189 48817217 ~ 48820321 (+) True G1182498
TU1348561 lncRNA downstream 79042 48875070 ~ 48875345 (+) True G1182521
TU1348512 lncRNA downstream 79646 48875674 ~ 48879245 (+) False G1182492
TU1348515 lncRNA downstream 79646 48875674 ~ 48879245 (+) False G1182492
XM_036941354.1 mRNA upstream 58227 48698203 ~ 48704379 (+) False LOC110486650
XM_021558410.2 mRNA upstream 58227 48700596 ~ 48704379 (+) False LOC110486650
XM_036941355.1 mRNA upstream 58227 48700954 ~ 48704379 (+) True LOC110486650
XM_036941351.1 mRNA upstream 140416 48598978 ~ 48622190 (+) False LOC110486647
XM_021558403.2 mRNA upstream 222119 48532538 ~ 48540487 (+) True LOC110486644
XR_005035576.1 mRNA downstream 161749 48957777 ~ 48959202 (+) True LOC110486658
XR_005035844.1 mRNA downstream 162161 48958189 ~ 48958276 (+) True LOC118938637
XR_005035843.1 mRNA downstream 162394 48958422 ~ 48958510 (+) True LOC118938636
XR_005035842.1 mRNA downstream 162650 48958678 ~ 48958765 (+) True LOC118938635
XM_021558431.2 mRNA downstream 303979 49100007 ~ 49104036 (+) True LOC110486662
TU1348348 other upstream 200982 48556014 ~ 48561624 (+) True G1182354
TU1348132 other upstream 640031 48119613 ~ 48122575 (+) True G1182153
TU1347905 other upstream 1019542 47742361 ~ 47743064 (+) True G1181955
TU1347506 other upstream 1213058 47549279 ~ 47549548 (+) True G1181636
TU1347459 other upstream 1292594 47468201 ~ 47470012 (+) True tmem100a
TU1348583 other downstream 150721 48946749 ~ 48947969 (+) True G1182541
TU1348602 other downstream 181972 48978000 ~ 48981403 (+) True G1182555
TU1348645 other downstream 267757 49063785 ~ 49065142 (+) True G1182595
TU1348688 other downstream 318947 49114975 ~ 49118697 (+) True G1182629
TU1348657 other downstream 404958 49200986 ~ 49202690 (+) True LOC110486671

Expression Profile