RNA id: XM_021558419.2


Basic Information

Item Value
RNA id XM_021558419.2
length 2877
RNA type mRNA
GC content 0.53
exon number 20
gene id LOC110486655
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 48858248 ~ 48872847 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGTCCATTTTCAAGCCCAACCAGGCCTTAGATGTCGATAACAGAACGTTTGACTAGTGGTTTGTTTTCGGCACGGCCTACTTTGTGTGTCAAAATGACAATGGTTTCGTTTTAACTGTACAATTTAAGTATTTGGCCTCGTCTAAAACACAATTATTTGGCTGACGGCTAAATACCGCCAGATCATGGACCTGCCCATTAAACCTGGCGCCAATCAAGTGGCAGACGTGGTGTTCGTCATCGAAGGAACTGCAAACCTCGGCCCCTATTTTGAATCCCTCAGAAAACATTACATACTACCTGCAATCGAGTACTTCAATGGAGGCCCTCCAGCAGAGACAGACTTTGGAGGAGATTATGGAGGCACACAGTATGGTCTTGTTGTGTTCAACACAGTGGACTGTGCTCCTGAATCCTACGTCCAGTGTCACGCACCAACCAGCTCAGCCTTTGAGTTTGTCTCGTGGATTGACAGCATCCAGTTcatgggaggaggagcagagagctGTAGTCTCATCGCAGAGGGTCTGTCTGTGGCCTTGCAGCTCTTTGATGACTTCAAAAAGATGAGGGAGCAAATAGGTCAGACACACAAAGTCTGTGTGCTGCTGTGTAACTCTCCGCCATACCTGCTCCCTGCCGTGGAGAGTGTCAGCTATACGGGCTGCACTGCAGACAATCTGGTCAAGATCATCAGAGATAGAGGGATTCATTTTTCTGTGGTGTCGCCACGGAAACTGCCAGCGTTACGGGCGCTGTTCGACAGGGCGTCACCAGTCGGGGGACAGGTCGACCCCCACCCAGACTACAGCCAAGACCCCTTCCACATGATCCTGGTTAGGGGTATCTCACTTCCTGTGTCATCAGGGGGAGGATCGGGCCCTCTCAAACCAATTCTACCCCCTCAACCCCTGCCTGTCAGTCAGCCTCCTCTTGGTCCCGCCTCGCAGGCTCCTCCACCAATAAGCACGGCCCATCCATATCAGCCCCCACCTTCCCTTAACGCGGCCCAGGCAGCTGCACAGATGGCTGTAGAGGCAGCTAACAACCAGAAGAGTCGCTTCCCAGGCATGGTCAATCCTGGTCCCCCATTCAGCGGTCAGTCAACTCTCCCATCTGTAGCAGGAGTAAAGTTGGCTTCTTCCAGTCAGCCCAGCCTATCCACAGTCACCATAGTTTCCACACCCATGTTGCCTCAGCAACAAGCCCCTCCCCCGCAGCAGCAACAAGTCCAGCCGCCGGGACAACCACAGCCCAATCAGCAGCAGCCGGTGCCCCCTCAGCAGCAGCCCACAGCCAATCAGCAGACGCCCCCATCCTCACAGCCTGGCATGCCTGGTGTGTCTGCAGCCCAGGCAAATCCGATTGGGGGGCAGCAGCAAGGCGTTGCCAATAAGATTGTAGCATGGAGTGGGGTACTGGAGTGGCAAGAGAAGCCTAAAGCCTCGTCTATGGATTCCAATACCAAACTCACTCGCTCCCTGCCCTGCCAGGTGCAAGTCAACCAAGGAGAGAACCTAAATGCCGACCAGTGGCCACAGAAGCTCATCATGCAATTGATCCCACAACAGCTACTGACAACACTCGGTCCCCTCTTCAGAAACTCTAGAATGGTTCAGTTTCTCTTCACCAACAAAGATGTGGAGTCACTAAAAGGTCTTTATCGTATCATGGCCACTGGATTTGCGGGGTGCGTCCACTTCCCCCACAGCGCCCCCTGTGAGGTGCGGGTGCTCATGCTGCTCTACTCCTCCAAGAAGAGGATTTTCATGGGCCTCATCCCCAACGACCAGAGTGGCTTCGTCAACGGCATCCGACAGGTCATCACCAACCACAAACAGGTCCAGCAGCACCGCTCGATGGGTTCAGGAGGGCCGATGCCAGGGCCACCTGGCCAGGTTCAACCCAATCAGAACTTCCTCAACCGGCCGCAGGGGCCCATCCCTGTCTCCCATGGCAACGTGCAGCAGCAGtCTGTGGTGGTGGGCATGCCCTCTGTTAGTCAGGTCACTCTGATGGAGGAACAGCAGAGACAGGCCAACCTGATGACGATGAGAGCATCCGGCGCACCTAATCAGCAGCCACCCGTCACTGGTGCTCCGCCCAACCAGGTCGCTCAGGGTGGACAGGCCCCGCCCCAGGGTGCCATGCTCCGCCTTCCAAACCCAGGAGCCAATCCACAGCTGCGCAGTCTCCTCCTCAGCCAACAGCAGCCACAGGGTGGTGTTGGTCACATGCAGGGCATGATGCCTCACCAGGGGCTGGGAGGGCAGCTGGTCCACCCTACTCCAGGAGCGGGCCCCCAAATGCAGGCCCAGTGGAGACAGCCCCTGGCAGgtcagaTGATGATGGCTGCTGGTCAGAGGGGCCCTGGAGCCCAGCCCCCCGGGATGCCCCAGGTGTCTTCCGTCATGGAGGATGAGATTCTCATGGACCTTATTTGAGTTTGGACCCACAAAGACTACATCCCCCAGCAACCAGCATTTTCAGTTTCATCATGGGGGCAGACTGGGAGATGTAGTTTTCCTAGTTTCTACTCTggctttttttctttttttttctttttttatatcAAAAGTTTGTACTGTAGAGTTATTGGAGATGATGAGGGGAGGACATGCAAGCACCCACTCTcatgcatatgcacacacacacacaaacacacaccctatcACACACCTAATGAAGCCAACGCAATGGGAGGACAGTGTTCATTACACTGTTGTGTGCTTGTATGGAAACCTGTTTTACATTCATTTAATTGTTtatatgaaatgtattttttattgagGTTTAACTTTTTCTGAAGTTGTGTTTTTGAGCTATATTACATTGTTTTATTGAGATGAAATAGATACATTTTGTCAAGGAGCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1349571 lncRNA downstream 51100 48806938 ~ 48807148 (-) True G1183396
TU1349543 lncRNA downstream 62231 48790151 ~ 48796017 (-) True G1183375
TU1349552 lncRNA downstream 85377 48764009 ~ 48772871 (-) True G1183379
TU1349529 lncRNA downstream 116156 48741813 ~ 48742092 (-) True G1183363
TU1349528 lncRNA downstream 116779 48741238 ~ 48741469 (-) True G1183362
TU1349624 lncRNA upstream 11143 48883989 ~ 48934491 (-) False G1183424
TU1349639 lncRNA upstream 31382 48904228 ~ 48905481 (-) True G1183432
TU1349606 lncRNA upstream 35017 48907863 ~ 48934491 (-) False G1183424
TU1349612 lncRNA upstream 35017 48907863 ~ 48925693 (-) False G1183424
TU1349617 lncRNA upstream 35017 48907863 ~ 48934491 (-) False G1183424
XM_036941375.1 mRNA downstream 26372 48824468 ~ 48831876 (-) True LOC110486654
XM_021558412.2 mRNA downstream 119177 48731139 ~ 48739071 (-) False LOC110486652
XM_021558413.2 mRNA downstream 119177 48731139 ~ 48739071 (-) True LOC110486652
XM_021558411.2 mRNA downstream 133472 48705713 ~ 48724776 (-) True LOC110486651
XM_021558409.2 mRNA downstream 160270 48689028 ~ 48697978 (-) True LOC110486649
XM_036941376.1 mRNA upstream 2825 48875671 ~ 48936482 (-) False LOC110486656
XM_036941377.1 mRNA upstream 2825 48875671 ~ 48936482 (-) False LOC110486656
XM_036941378.1 mRNA upstream 73882 48946728 ~ 48955961 (-) False LOC110486657
XM_036941380.1 mRNA upstream 73882 48946728 ~ 48956570 (-) True LOC110486657
XM_036939760.1 mRNA upstream 88059 48960905 ~ 49053966 (-) False LOC110485205
TU1349502 other downstream 190166 48667788 ~ 48668082 (-) True G1183337
TU1349369 other downstream 387265 48435826 ~ 48470983 (-) True G1183225
TU1349334 other downstream 468530 48379267 ~ 48389718 (-) True G1183196
TU1349326 other downstream 481282 48364056 ~ 48376966 (-) True G1183192
TU1349473 other upstream 24833 48897679 ~ 48936457 (-) True LOC110486656
TU1349479 other upstream 100337 48973183 ~ 48977408 (-) True LOC110485205
TU1349475 other upstream 483532 49356378 ~ 49357214 (-) True setd1a
TU1349433 other upstream 614080 49486926 ~ 49504010 (-) False LOC110486687
TU1349434 other upstream 614080 49486926 ~ 49504010 (-) True LOC110486687

Expression Profile