RNA id: TU1348666


Basic Information

Item Value
RNA id TU1348666
length 1694
RNA type TUCP
GC content 0.39
exon number 3
gene id LOC110486678
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49263529 ~ 49266771 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGTGACCACAACCAAAACTGAGACTGCAAAAGAAAGAAAGATTGCTCAAGAAAATATTATAAACAAGAAATATCTGGATAACATTTGGATATGTTAAATCAAGTCTTCACGAACCTGAAGCCACAACCAACTAGCAGCTGTGATCATTAATTAAATCCAGGAAGGAAAATAAATCAAAGAAAATATCAGCTTTCTTCTTCACAGCTCTGTCAGCCGTCATAAGTGAGGATTTCAGTTTGACTGGAGAGTAGACAGAGGCATACAGAGCTGTACTTTCCCAATCAAGATCAAGCCTGGACTAAAATGTCTTCCCAATCAGCAACAATGGAGGACATTCCACTGACTGCTGTCCCAGGTCCAGGTGAAACGACAGATGCCCAAAATGACACCACCTGCCTTCAAGTGATCACCTGCTGTGGTCGTGACCATACTGTTCCCTCCTGTGCCAAGGACAGGGACTATAGGAGACTGGCCATTAGCAGCATCATCTGTGGACTCTCCTGCATTGGCATTTTAGCTTTGGTCAACTCAGTCAAGGCTCGAGAGGCAAGGAAGACGACTCCAGAGAAGGCTAAACAATACTCCCAACGGGCAAAAACGTTTGGGATCATTTCTATtgtggtgtgggtggtgattCTGGTACTCAGCCCACTACTATTGGGACTGGTGTCATACATACTCACTCTGATAGACTGACCAATTCCCAGGAACCACCAAGGTCGGATGTACTGTACCATAAGGATGGCTACAGGACAACGGTCCAACTTCTTTAGTATTGATCTTGGACTGCTGTGACACTGTGAGGTGGGAACAGATGGAAAAGCACCTCCGGTGACTCGGGGAGAccccactgtatacagcctcccTGAGTATCATTCTGATAAGGCTGTCTTGCTGATAAGGATTTACAAAGGCACCTTTAACTTTATTTTGTGTCACTCTGGAATTTATCGCTGGAAGACTGGTTTATAGTTAACATTCAAGTGATGCCACAGCTATAAATACATTATAAATATTAAGATATTTTGACATTTATCAGTAGCCCAACCAGACTTTTAGCACTTAAGAGTAAGGACTGTAGTCAGACTACCTTCTTCCTGAATAAGAGGTTGGTTCAGAGACGAGAGATGAGCAAGGGGACACAAAATAAGCACTTGTTTTTGAGATAGCATTTAATGGACACGGTTTATTTGCTGACATACATGAGTCCAAGACTGTATGAGTAtaaaacagcagatttttaaaAATCCTGTATAAATTCAAAACAAACTGTGAGCCACTATACAGGGGCCTGACTCCAAAACACTCCCATGTCCACTATCTGTCTCAACCTTGACGTTTCACTTTTACCATTTATGATATGCAACATTAACTTTATTTTTTAACAATGTTATATTTTTTATCAGTGAAATAAATACATGTGTATATGTGAGGAACTAAATCTAAATGTCTAATTATAAAGGACAAATTGTGAACTAGGTATAATTAAATCAGGGCAGTGTTTCTGATTTACAGTAATCGTGAAAACTGCCTTTGGTTTTAAATACCAAAAATGTACATTACTTCATTTTGTTTACATTATCATTTCTACATTTACTGTATTCATGTCATTGCCTTACtttgtattttatatttatacaTAGCATGTTGTAAAGATTTTGTAATTAAATGAAAATACATTTACATCAATTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1348683 lncRNA upstream 113726 49147778 ~ 49149924 (+) True G1182627
TU1348679 lncRNA upstream 115357 49104102 ~ 49148293 (+) False G1182627
TU1348686 lncRNA upstream 115357 49147367 ~ 49148293 (+) False G1182627
TU1348638 lncRNA upstream 209633 49053596 ~ 49054017 (+) True G1182591
TU1348635 lncRNA upstream 216965 49045076 ~ 49046685 (+) True G1182588
TU1348662 lncRNA downstream 33430 49300201 ~ 49303631 (+) True G1182611
TU1348768 lncRNA downstream 43329 49310100 ~ 49311267 (+) True G1182700
TU1348775 lncRNA downstream 53032 49319803 ~ 49320131 (+) True G1182705
TU1348777 lncRNA downstream 57167 49323938 ~ 49324173 (+) True G1182707
TU1348781 lncRNA downstream 83624 49350395 ~ 49352361 (+) True G1182711
XM_021558439.2 mRNA upstream 50231 49210465 ~ 49213419 (+) True LOC110486670
XM_036941385.1 mRNA upstream 60957 49198846 ~ 49202693 (+) False LOC110486671
XM_021558440.2 mRNA upstream 60957 49200943 ~ 49202693 (+) False LOC110486671
XM_036941384.1 mRNA upstream 125399 49134951 ~ 49138251 (+) True LOC118936277
XM_021558431.2 mRNA upstream 159614 49100007 ~ 49104036 (+) True LOC110486662
LOC110486677 mRNA downstream 14335 49281106 ~ 49284116 (+) False LOC110486677
NM_001124679.1 mRNA downstream 28565 49295336 ~ 49299251 (+) True LOC100136718
XM_021558453.2 mRNA downstream 103467 49370238 ~ 49384522 (+) True LOC110486684
XM_021558462.2 mRNA downstream 255759 49522530 ~ 49530730 (+) False LOC110486690
XM_021558463.2 mRNA downstream 255759 49522530 ~ 49530730 (+) False LOC110486690
TU1348657 other upstream 60960 49200986 ~ 49202690 (+) True LOC110486671
TU1348688 other upstream 144953 49114975 ~ 49118697 (+) True G1182629
TU1348645 other upstream 198508 49063785 ~ 49065142 (+) True G1182595
TU1348602 other upstream 282247 48978000 ~ 48981403 (+) True G1182555
TU1348583 other upstream 315681 48946749 ~ 48947969 (+) True G1182541
TU1348751 other downstream 14888 49281659 ~ 49283503 (+) True LOC110486677
TU1348815 other downstream 152799 49419570 ~ 49426223 (+) False G1182742
TU1348816 other downstream 152799 49419570 ~ 49422762 (+) True G1182742
TU1348832 other downstream 313555 49580326 ~ 49584562 (+) True ndua4
TU1350070 other downstream 565450 49832221 ~ 49835014 (+) True G1183819

Expression Profile