RNA id: LOC110486677


Basic Information

Item Value
RNA id LOC110486677
length 1444
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC110486677
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49281106 ~ 49284116 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAAGTTCTCTATAAACAATTCAAAACGTTCAGCACCACAACGGGGTGTATTCAGAGTCTGTTCGTTTCGAAGTGTTTAAATCTTATGTAACGAATCCATGCAAGGCCATTTCATGGGTGTTTGGGGGGTATTTACCCCTAGAGACCAATTTATTGAAGGCTAATGACACTCCTCCTTTTCTTATGAGccttgtgttgttaccatgttcaGGATCCTCTCTTTGTTGGAGAACGTTGTAATGAAGATCCATGAGAAGATTTTAACCCATTACCTATCCTGCACCTCACCGATAGATAAAGAAGGTTACCTCTACAAAAAGAAAGAGAGGACCTCCTCCCACCAGAGGCGCTGGTTTGTCCTGAAAGCCAATCTCCTGTTCTACCAGGAGCGTCCGGCAGATCGACACCTGCTGGGGGTTATTGTCCTAGAGGGCTGTGCTGTCCAGCGCTGTGAGTCTGAGGGAGGACTGTTTGCCTTCTCCATGGTGTTCAGAGGTTCAGGGCTGAAAACCTACGGGCTTGCTGCTGAGGACCAGCTGGGCCAGGAGAGCTGGGTCAAAGCCCTGCTCACAGCCAGCCACTGCTACCTTTCACTGCTGGTCAGAGACCTGGGGAAGCAGTACGAAGaaccagagaggagagaagggggaagccACAGTGCCAGTAATCTATTACAAGCCCCTCCAATCCCCAGCAACGTAATCAATAAGAGGTCCCCTAAGCATTGGCCCAAGAGAAACGCACATGTCACACCGATAAATGGACCAGCACCACCATATGGGGAATGGCCACAAGTGGACTGATCCTCTAGAGGATTTCACCAAGCTACATGATTACTATGGAGAGGAGGTGAAGCAGCTGAGAGCTGATTGGctgaggaggaggcaggaggaagAGGCGCAGCTTGAGGAGGATCTCATTGACCTGAGTGAACACTGACCCACAGAGATCAGACAGTCACCACTCTGGTTATTTTGATGAGGATTTTGGTGTGAATGCCAGTAATCTGAAATAAGAAAGTGCCTTTATAATTTGAGGAACTAGAGCATTAAAGAAGAACTAGTCACCTGTGTATACATCATGATGGGATTATAGTCCTATGAGGTTGATGGTGAGCCTAAAAATGTCTTGTCACAAAGCAGAGACTCATCATCAAACTCATAAGACTATCACCCATAGTGGTGTTGCAACCGGATGCATCCGGTTGTCAGGGATACAGCCCTGATGTGGGAACTCTGCTCGGGTGTTTCTTTTGCACCTGCTACATTAGGTTATAGGACTATAATCAGCTCATGCTGTATACACAGGTGACCTGTTCCTCTTAAACTCTCTAGTTGCTCAAATGATAGTCACTTTCTTATTTCAGAGTACTGGCACACCTACTGGTTTGTCTGTTACTGTTTGTAAATTATCATTAAAATCACTGGTATATTTTCTAGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU1348683 lncRNA upstream 131182 49147778 ~ 49149924 (+) True G1182627
TU1348679 lncRNA upstream 132813 49104102 ~ 49148293 (+) False G1182627
TU1348686 lncRNA upstream 132813 49147367 ~ 49148293 (+) False G1182627
TU1348638 lncRNA upstream 227089 49053596 ~ 49054017 (+) True G1182591
TU1348635 lncRNA upstream 234421 49045076 ~ 49046685 (+) True G1182588
TU1348662 lncRNA downstream 16085 49300201 ~ 49303631 (+) True G1182611
TU1348768 lncRNA downstream 25984 49310100 ~ 49311267 (+) True G1182700
TU1348775 lncRNA downstream 35687 49319803 ~ 49320131 (+) True G1182705
TU1348777 lncRNA downstream 39822 49323938 ~ 49324173 (+) True G1182707
TU1348781 lncRNA downstream 66279 49350395 ~ 49352361 (+) True G1182711
XR_002468097.2 mRNA upstream 14339 49263529 ~ 49266767 (+) False LOC110486678
XM_021558439.2 mRNA upstream 67687 49210465 ~ 49213419 (+) True LOC110486670
XM_036941385.1 mRNA upstream 78413 49198846 ~ 49202693 (+) False LOC110486671
XM_021558440.2 mRNA upstream 78413 49200943 ~ 49202693 (+) False LOC110486671
XM_036941384.1 mRNA upstream 142855 49134951 ~ 49138251 (+) True LOC118936277
NM_001124679.1 mRNA downstream 11220 49295336 ~ 49299251 (+) True LOC100136718
XM_021558453.2 mRNA downstream 86122 49370238 ~ 49384522 (+) True LOC110486684
XM_021558462.2 mRNA downstream 238414 49522530 ~ 49530730 (+) False LOC110486690
XM_021558463.2 mRNA downstream 238414 49522530 ~ 49530730 (+) False LOC110486690
XM_021558466.2 mRNA downstream 238414 49522530 ~ 49530730 (+) False LOC110486690
TU1348666 other upstream 14335 49263650 ~ 49266771 (+) True LOC110486678
TU1348657 other upstream 78416 49200986 ~ 49202690 (+) True LOC110486671
TU1348688 other upstream 162409 49114975 ~ 49118697 (+) True G1182629
TU1348645 other upstream 215964 49063785 ~ 49065142 (+) True G1182595
TU1348602 other upstream 299703 48978000 ~ 48981403 (+) True G1182555
TU1348815 other downstream 135454 49419570 ~ 49426223 (+) False G1182742
TU1348816 other downstream 135454 49419570 ~ 49422762 (+) True G1182742
TU1348832 other downstream 296210 49580326 ~ 49584562 (+) True ndua4
TU1350070 other downstream 548105 49832221 ~ 49835014 (+) True G1183819
TU1350149 other downstream 598705 49882821 ~ 49883435 (+) True G1183875

Expression Profile

LOC110486677 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
End of interactive chart.

LOC110486677 Expression in each Bioproject

Bar chart with 21 bars.
LOC110486677 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000069_04140312_04141990.mRNA True 2401 mRNA 0.41 3 CI01000069 4139614 ~ 4142844 (-)