RNA id: XM_021558449.2


Basic Information

Item Value
RNA id XM_021558449.2
length 6612
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC110486679
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49300153 ~ 49312989 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATTATGCCTATACGTGTGAGTGCCCGATCGCACTAACAGGAGCGCGCACGTGGCTGTCAGCAGAAGGAAATGCAGGCGATTTGTGCTAAATGTCTAACAGCAGCACGACCACACTGATTGTGAAGGACAGTTTGGAAGAAAGGAATACCATTTGGTCGTAAAATGATATACATTTGTAAGATTTAAACTCTCTGCAGTTATGTCAGAGAGTAACCCAAACAGACAGCTAGGTTAACACTCGCCTAACATCATTAGCCAGcaagctaactaactagctagctagctagttttggGGGACATTGCGCCTCCTAACCTGCTCAGCCGTTgtctatttattttccctttgttGCCTGGACAGTCCAGCTTCTCATTGTCGTGCTTTCATTGAACGGAGGAGCTTAGCGGACCGGAGCTGTGGGGGGCCCGCGGACAAACCCCCTGCCCTGGGCGTCCAGGCGGACGGATCACGTAGACACGCGGGCCGTGGGAGAAAATAAGGAGGAGCTATGGCCGAAATCTCCGCCCTAATCCCCTCACCTCCAGCTATAGGTGACACACATGCTGCCCCCTCCTTCCCCATACCCTctactgccccccctcctcccagcAGCACCACCCCAGAGCCCACTAAGGAGAACCCAATCCCCAAGTCCTCTCTGTACGGTGACAAAGCTTCTCTGACATTAACTGTACCAGGAGAGATGCTTCCTTCTCACCCTCCTTCTCCCAAGTCTCccaagagaggggggagaggacctCCACCGAGTCCCCCCAAACGCGTCTCATCAGCGTTAACTCCAGAGACTCCAGTGCCCCCACCTCTAATACCCCCAGAGAGACCTGCCCCCTTACCTGTAATAGCCCTAGATACTCCTGCCATCCTACCTGTAGATGTAGCATTGTGGCTGAGGGAGGGAGTAAAGGAGACATACATGGGGGCAGGGGCCAGCCCAGTGTTGGCTGTAAAGCAGGAAGTGAGTAACCCAGGGGGCAAGCAGCTGTTAAATGCCCCCTCAGAGGGCCCTACACAGGCCCACAGTGAGCAAGAGGTACAGGGGGTAACACAGCAGACTACCAGCCCCTCCTCCTGTCTTAATCTCACCCCTAATCTCTACCCCAGTGTTCATGTCACTGTGAACACTAATCCTGCTACTGATTATGCTCAGCCTCAGTCTATGGTGgaatctctccctcctcctgcccCCACTTACACTCCCCCTCCTCCTGCCCCCACTTACACTCCCCCTCCTCCAGACTCCACCCAAGCAGCTGCAGCCCCTGAAGCACAAAATCGTCTGCCACCAGAAGAAAGCCCAAACCCTCCCAAACTGGACACCCCCAGCCTGTCTCCTATACCTGAGACCTCAAGCCAATCTCCCAGAATGGCAGAGCTACCCAACACCCCCTCCAGAGCAGTGCACCCCAGCCCCCCAGTGATCCAggaacctgtctccctctccctgccctaCCCCAGAGCCCCAGCCCCAGACACCCTCAGCTACTTGGAGTCAGCCAGCATGATGTCAGGGACCCTGGAGTCTCTGTCTGGCCTGGGGGAGGATGGAAGCTCTATCGGGTCAGACTCAGAGATCAACGGCCTGGCTGTTAGACGCACTGACAAATATGGCTTCCTCGGCGGGACCCAGTACAGCGAGGGCAGTGATAAGGACATCAGAGTTGATGTAGCACGGCAGAGAGAGCTGAAATGGCTGGACATGTTCAACAATTGGGACAAATGGGTCTCAAGACGCTTCCAAAAGgtaAAGTTGCGCTGTAGGAAGGGGATCCCCTCTTCTCTCAGGGCTAAAGCCTGGCAGCTGCTCTCCAACAGCAAGGAACTCCTGGACTCCAACCCGGGCAAGTTTGAGGAGTtggagagggagcagggagacCCTAAATGGTTGGACATTATAGAGAAGGACCTGCATAGACAGTTCCCCTTCCATGAGATGTTTGCTGCTCGCGGTGGACACGGGCAGCAGGATCTGTACCGGGTACTGAAAGCCTACACAGTGTACAGACCTGAAGAGGGATACTGCCAGGCCCAGGCCCCGGTGGCTGCTGTCCTGCTCATGCACATGCCTGCGGAGCATGCCTTCTGGTGTCTGGTGCAGATCTGTGAGACGTACCTGCCTGGATATTATAGTGCTGGATTGGAAGCAATCCAGTTGGATGGAGAGATCTTCTTCTCTCTGCTACGTCGTGTCTGTCCCATGGCCTACCGTCACCTGAAGAAGTTTAAGATAGACCCCATTCTCTACATGACCGAGTGGTTCATGTGTGTCTTTTCACGCACCCTGCCGTGGTCCTGTGTGCTACGTGTGTGGGACATGTTCTTCTGTgaggGAGTGAAGATAGTGTTCCGTGTGGGCCTTGTGCTGCTCAAGCAGATGCTTGGCTCGGTGGATAAACTGCGGGAGGTCCAGGGCATGTACGAAACCATGGAGCGCCTCCGGAACATCCCACCTGAGTCTGTCAGAGAGGACCTATTGGTGCAGGAGgtggTGTCCCTAGCGGTGACCGAGGCTCTGATCGAGAGGGAGTGTAGTATTCAGGTAAGGAAGTGGAGGGAGTCCAGGGGCGAACTGACCCACCAGCCTGTCCGAAGGCTCCACGGGACACGGGACATCCACGAGCACAAGCGTCGGGCCTCCGCCATCAGCTCCGGGGGTAGCTTCTCCTTCCTGGGGTCCATCCCCCCTCCAGGGCCCCTCAGGGCCTCCTCCAGCCTGCTCTCCCTCCCCGGCTTCCGCAAGTCCAAAACCCCCTTCCGTTCTCAGAAGATGGGCTCCTTCTCTGGGGCCTCTGGGATGGAGGCCATGCAGCGACAGAACCCCTCAGCGGCAGCTTCAAGCCCACCCAGAGGCCCCGCCCACAAACCACCCATGTCTAGTGGTTCTGTAGCTAGGGCGCCTGCCTCTCAGAGTCCTTTGGTTGGGTCTGGTCCAGGCCCCTCTTCTGGCCCAGCCCAGACCTCAGCACAGAGCCAGCCTGGTGCATCAGCCCCAGTACACCATACACCACCCAACACCCTCTCCCCCAAAGTCACTTCTGAGCAGATCACACCCACCATCCCATCACCCACCGCTAACAACACACCTCTGCCCCCGTTCCCagacggagggagaggtggaggaggaggagcagcagctacaggaggagaggatgacaggaagaagaagaggagcaaggaagacaagaagaaagagaaggaggaggagaagaggaaagaaaaggagaagaagaaggacaaAGCAGACAAGGAGAGccagaagaaggagaaggagcgggcagagaaagagaagaaaaaggagaaaggggggaagaaaaaggacagagggggaggagaggcagaggagaagaATGGAGCCACAGCACCAAGAGATTCAGCCTAGTTTCTCCTGTTATTCCTTCAGAAAGAAAACGGAGAAGGAAAAAAAGAGGACATGGAAACAAAAGACCCCCAGAagtagaacgagagagagaaaaggagaaggcCTCCTGGATAGTGCATCTTGAGGACTACATATAGTCAGGAGACATCTGGATCATGGTTTTATTAGCACCCCAGGGGTCATGCCCCCTCATATAACCCCCTCATGCTTTCTTCATCAATGAGTTTGAATAATTAAGATGGGACACGTTTCCTTTTGCAACTGGAGAATTGTCTGTGTGGTTCACAATGGATCTCCCAACATCACACAACCGTTTTCTCATTtagtttattattttatttagtttTTATCAGACTAAAGCTGGTGGACAGACAAGCCGTTGGACATAGAGTAGGTGGGAGTTATAGAACATCCTAAATCCATGTAGGACCCTTGAGTCGTTCCCCATAATGCCCTGTCATGTCCAGTTTGTGGTCAGATGTCCAACCGGAATGCCTGCAGATAAAAGTAAACAATTGAAAAATATCTCAAACCCAGGCACTGAAGACCGTGATTGCTGGTAGTACTATGGTATTTGGATGTCTGGGAGGACCTATTTATTGTAGTGTTAagtgttgtgtgagtgtgtgccttAGTAGCGTAGTGAGCTGAGTTACCGTTCAATATTGCCACCCAgtttctctgctctttctctcatGTCTTTGTCTTCTTTTTTGAGTTGCTTGttttctcccccctttctctcatcTCTTGATCTCTAGTCCTCTGACCAGTGACTAAAGGTAAATGGAGAGATAACAGGTAAATGGAAAGATGTACACTGCGATAGGGAGGGTTtgtaaggagagggagaaatGAACATGACATTCTGAGCCTTGACAGACAGATATGCATGGATCAGGATGGCACCTCCCTAACAACACAGAGTGATTTAATTTTagaatgtaattttttttttgtcttttcaaGTTTCTCTTGAGTATGTTTATAGTGGGAGATGATAATAGATACTGGTAGTTCAGTGAGGGAGGGTCCTTCTGCATTCAATGACAACTCTGAATCTGCCCGCCAGACCAAATGTCCATCTATTATTTTTCTGCTTGTGATAaattaaataatatatattttatttagccAAATAGTAATAAGGGTGAGGCTTTTATTAAATTAACCCATTGGAATGTGATCTATTTAGAGTGATTTGAGAAACTTAAGTTGGCCACTCCTgtttggtaggtaggtagattgTTGAATCTCATCTGGATAGTTAATacagaatgatagaggcctctagtggccaaaggGCTGTTTTAGCATGAGCAGGGCcatgagggcttccaccatttgaATGTAGTCAACATggtgggacttccaacttcattgaCCGATCCCTActggtgaccctgttggagtTGTGCAACCAGGACAtcgggagggatcagccaatagggaagaagaaaattgactactttgaaatggagattgcctcaatgaagctgtcacagatgctataatggcacagatacaatgATGAGGCCTATTTCCATCTCAATGGGATAGTTTCACCTCTTACACCTGCACCTTTAGGACCCATAGGAAGCCACTTGGTGCTGGGTGGGTCAGGCTTGCCAATGTAGCATTAACCTCTGAACTCTGACCTTCAGGCTATGATGTATTTATGTACAAAGTTGGTTAATTTAATCATATTATATATGTATTCTTTATTTTGGATTTGACTGCTATTTTTCTATGCGAGTAAAGGACACCTGGTTAACTGGAAGGACGGCTGGCGATGTGAAGCCCAGTTTGAGGATAATGTTAAGTATTGGTTTTTTTTAGATACTGGTATGGCTGTTTTGATTTCATTATTGCACACTTGTCCTCATCTTCTAAGATAACAAATCCTGTTTATGTCATTTCAAATTTCAAGTTTACTGTGGTAGCTATGGATAATGTTAGGTCCACAATTCTCCATTTACCTTATTACAGTATTAAACCTGACAGTGATTGAAGAACAGGGGAATGACCATCAACCGATGAACTAAGATTCACATGAGTATTTTAGAtatgacatcatttgagtgagCCGAAGGTCATAAAGTACTGTATGAGATACTGGGAGGCATTTAGTCAACTCTGACAAGGGTTGTAAATTGAAGATCTGAAGTTGTCTGTCTTTGTCACGCCAGTATGTTGTAACCAACCACCATGATGTTTTAATAACTCCCTAACCCACTCACACACAGTGTTATGTAACGtatgtatactgtacattagatggATAGTGTCGGTTAGTTACTGTAACACCATTCCTTGGTGGAAACCGTTGATTCTCTTAACACTCATTCTCTGTACTGTTTTTGTAGGCGAGGAGGGTCTTTAGTGTAATCGTAGCCAAAATGTCCTTTTTGTTCACTATTTGTCTTTTTTCCCCAACTCATGTTATTTTTTAAGCTCATGCTTTTCCCCTTCTTCCCCCACATTTTGCTTTCAGTCTTCTCAGAATCACTTGGATCAGAGTAGAGTCGGCGAAGATGACTTGAACATGTTTATGCAAACCTTACTGTTCACAAAGAATGTTGTCAAACAGCAGCACTGACGGCCAGCAATGCCACTGCTGAGATCAGTAGTTTTCATGGCAATAAATAGAAGTTGGAGAACTCTGAGAATGTTGGAGAACCCTGAGAATGCTAATGCTAACCAATCAGGATAGAGCAATATTTCTCCAAGCAGTCCCTGGCTTCATCCAATTGGGTAGGCTCCTTAAGGTCCTCAATTCTATGTTGAGTCATCAAGAGGTCGTGACAGTCATCCTGTCATTGCTCTCAAACTGATCTTGATCTGGAATCAGTCCTCATGCCTGAAATAGCCAGGATGAGTCAACAGAGACACTTGGGTCCTGAGTGCATTTCTGCATTGGTCCTGAAATCCTTGAGCTTGATTGCTTTTAATCGGGAGCGTCCCactgattagatttttttttaaaggttgttGCTGTTATGTTTTTCTATTTTGTCATGGTTTCTCCCCAACTgtatgtattttgttgttttaagTTTACATGGAACTGTTATTGGTGGGAAATAAAATCCTAgatattgaaatgcattccttaACTGCAGAAAATCTACACATGATGTATTTAATTAATAATGATAATGACAGTTGTGATGAATAATAAACCATAATATATTAAAGATCCTGCTCTGCCTTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1349424 lncRNA downstream 289 49295176 ~ 49299864 (-) False G1183273
TU1349425 lncRNA downstream 289 49295176 ~ 49299864 (-) False G1183273
TU1349428 lncRNA downstream 289 49295176 ~ 49299864 (-) False G1183273
TU1349429 lncRNA downstream 289 49295176 ~ 49299864 (-) False G1183273
TU1349432 lncRNA downstream 289 49296056 ~ 49299864 (-) True G1183273
TU1349803 lncRNA upstream 4295 49317282 ~ 49317483 (-) True G1183567
TU1349461 lncRNA upstream 12040 49325027 ~ 49325527 (-) True G1183297
TU1349825 lncRNA upstream 119950 49432937 ~ 49433171 (-) True G1183588
TU1349827 lncRNA upstream 122781 49435768 ~ 49435981 (-) True G1183590
TU1349829 lncRNA upstream 126164 49439151 ~ 49439353 (-) True G1183592
XM_021558447.2 mRNA downstream 19043 49278149 ~ 49281110 (-) True cd2bp2
XM_021558445.2 mRNA downstream 22354 49267608 ~ 49277799 (-) False prr14
XM_036941388.1 mRNA downstream 22354 49267608 ~ 49277799 (-) True prr14
XM_036941389.1 mRNA downstream 36818 49251627 ~ 49263335 (-) True rusf1
XM_036941390.1 mRNA downstream 37650 49251627 ~ 49262503 (-) False rusf1
XM_021558451.2 mRNA upstream 13735 49326722 ~ 49339857 (-) True hsd3b7
XM_036941391.1 mRNA upstream 33553 49346540 ~ 49360939 (-) False setd1a
XM_036941393.1 mRNA upstream 33553 49346540 ~ 49360941 (-) False setd1a
XM_036941392.1 mRNA upstream 33553 49346540 ~ 49361234 (-) False setd1a
XM_021558452.2 mRNA upstream 52431 49365418 ~ 49369859 (-) True LOC110486683
TU1349479 other downstream 322745 48973183 ~ 48977408 (-) True LOC110485205
TU1349473 other downstream 363696 48897679 ~ 48936457 (-) True LOC110486656
TU1349502 other downstream 632071 48667788 ~ 48668082 (-) True G1183337
TU1349369 other downstream 829170 48435826 ~ 48470983 (-) True G1183225
TU1349334 other downstream 910435 48379267 ~ 48389718 (-) True G1183196
TU1349475 other upstream 43391 49356378 ~ 49357214 (-) True setd1a
TU1349433 other upstream 173939 49486926 ~ 49504010 (-) False LOC110486687
TU1349434 other upstream 173939 49486926 ~ 49504010 (-) True LOC110486687
TU1349444 other upstream 224212 49537199 ~ 49544276 (-) True LOC118938314
TU1349952 other upstream 372351 49685338 ~ 49688456 (-) True G1183706

Expression Profile