RNA id: XM_021558451.2


Basic Information

Item Value
RNA id XM_021558451.2
length 2656
RNA type mRNA
GC content 0.45
exon number 7
gene id hsd3b7
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49326722 ~ 49339857 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTACTaacgcccagagcgcactctggcactacAGGGTGATTTTACAAACACAGAGATAAGATTGTCTTACAATGAAAGTTAAGACACGTTCAGACTAGTTTGAAAATATACTTGTTATGACAACGTAATAATTGCATGCGGCAGCTTTCGAAAATAAACACATGAATTGGACTAGCGCCGTCCCATTGTTGCAAAGAGTTATGGGATATTAGATTTCCGTTTTCTTAGTCATTTGCAATCTAGCTTTCAGGGGGGAAGTTCCAGACCGTAGTAGAATAATATCCATATAGGGTCGTCAAGCGATTTTGTAATACATAGTAGTCTTTTGATATTGTCTTCTCCAACCCTGTGTGGTACTATACTGTATGTCATCAGGGTGAGTGTGCATAGTGGAACGCACACAATGTCGCACAGGAACTTGCAGGCTTGCCGGAAACTGCAATGCCCTCGTGCATAGAGAGGATACAACAGAAGAAGGTTGGATCGCAGAGGGAGTTGTAGAAGATCAACAAGGACGACTCAGTAACTAATCAACCAAACATCAATTGTTGATAGTAGCAACTAGCAAAAGTGAAGAATGTCGACGAAAGAACGGGGCTTGGTTTATCTCGTCACTGGGGGCTGTGGGTTCCTCGGACAACACCTGTTACAGGTCCTTTTGGAGAAAGAGGATGCGGTAACGGAAATTCGACTTTTTGACAAACACATCGACTCAAGTTTAAATGGCCACAGCACagaGCGGGTAAAGGTGGTGGTGACGCAGGGGGACATCACAGATTACTCCAGTGTCCGGGAGGTTTCCAAGGGGGCAGACCTGGTCATCCACACGGCCAGCCTGGTGGATGTCTGGCACAGAGTCCCTGAGACAGTCATCCAGGCTGTGAATGTTCAAGGAACTGTGAATGTGATCAATGCCTGTGTGGAGAATGGTATTCAGTATCTGGTCTACACCAGCAGCATGGAGGTGGTCGGCCCCAATGTGAAAGGAGACCCTTTTATCAGAGGTGATGAAGACACCATCTACAATGTTTATCACGATATGCCCTACCCCAGGAGCAAGGCCAAGGCAGAGAAACTGGTGCTGGAGGCCAACGGCAATAAGGTGAAGGAAGGGGCCTGCTTGTACACATGCTCCCTCCGTCCCACAGGGATCTATGGTGAGCAGCACCAGCTGATGAGGGACTTCTATCAGATGGGTGTGAGGACAGGGGGCTGGATCATTCGAGGCGTCCCAAAGGACACGGAACATGGTCGTGTCTATGCAGGTAACGTGGCTTGGATGCATCTGCTGGCTGCTCGCTCCCTGAGAGAGCACCCCCAAAGGCTTGGAGGGGAAGTTTACTTCTGCTATGACGACTCACCCTACAAGAGTTATGAGGATTTCAACATGCAGTTCCTGTCTGGGTTCAACTTCCGCCAGGTCCATGTGCCGCTATTGGTGCTGTGGTTGGTGGCGTGCCTGAATGACCTGCTCCGCTGGGTGCTGAAGCCTGTGTGCAGCTACACACCATTACTCAACCGCTACACACTCGCTGTGGCCAGCACCTCCTTCACAGTGGGTTCAGACAAGGCCCAGCGCCACTTTCAGTACCGCCCCCTCTATGACTGGGACCAGTGCAAGGCCCGCACACAGAGATGGGTGGACACCTTTCCCTTCGCAGGCCCCAAGGACTCCTGATCTGGGCTGATCTGCTGGTCTGGTGGAACCTTGTCTGGGCTAAACCGATGCACCACACATCATAAcctgggatggatggaggagtgAGAGGACTTTCTCAGATTTATATTCTCACTATGTTTGCTCCATCATAAGCAGTATTATCATTACACATATGCAAACAAACTCTTGACCCCTGAACTCTTAAACCCTGAACTATGACCTCCTGCACGTGTTCTTCAAAAATGGTTATGTCCTCCTACCTGTCATTACTTGTGGCTAGCCTGTAGCTCCTCAGGCAAAATGATGACAAGGCATGTTCCACACTGAAATGGGTCACTTATCCATCCCATGATCTTCTGATTCACATGAGACCCTTCCCAGCCTTAAATAAGAGATAATATATTGGAGATTCAATATAAATGTTTGGGGCTTTATCGGACATTGCAATATTCATCTTCTTACAAAAgcggtagatataatgtgataGTAGTCATAAAAGGGCATAGATATGTGATATAGGAAAGCTGCTCCTGAATTGTTTTGAGTCTATTTCCAACAATACATTGCTATACATATTTTGCAATACATACATGAAAATGCAATACATTTTTCACAAGACATCATCACTACATAGACTTGATCTGTTTTTGTTGAAGAGCACTAGtgcagaaaataagtatttacatCTTCTTTTTACATCTACAACATGCATTAATGCACACAGAATATTCTCTGAATATGTTCTATGTGATTTTAGAGTTTTATGAATCACCTGCTATACATTAAGGTCATTTTATAATCTGAATGCACTGACAATTtaaaaacaataataaaaaaaatctttaaaaatAATATTTGCCAGTGCATTCAGATTTTAAACTTCAGACAGAGAAAAGGTTAATATTATATTTCATGCCTATTGATGAAATTATCATTTTGAGAAGTAGCGTTACTTAAAGAGCAACTGAAGGCAATAaaaaaacatattctattct

Function

GO: NA

KEGG:

id description
K12408 HSD3B7; cholest-5-ene-3beta,7alpha-diol 3beta-dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1349461 lncRNA downstream 1195 49325027 ~ 49325527 (-) True G1183297
TU1349803 lncRNA downstream 9239 49317282 ~ 49317483 (-) True G1183567
TU1349424 lncRNA downstream 26858 49295176 ~ 49299864 (-) False G1183273
TU1349825 lncRNA upstream 93080 49432937 ~ 49433171 (-) True G1183588
TU1349827 lncRNA upstream 95911 49435768 ~ 49435981 (-) True G1183590
TU1349829 lncRNA upstream 99294 49439151 ~ 49439353 (-) True G1183592
TU1349832 lncRNA upstream 104507 49444364 ~ 49444722 (-) True G1183595
TU1349842 lncRNA upstream 121635 49461492 ~ 49461846 (-) True G1183604
XM_021558448.2 mRNA downstream 13733 49300153 ~ 49312989 (-) True LOC110486679
XM_021558449.2 mRNA downstream 13735 49300153 ~ 49312987 (-) False LOC110486679
XM_021558447.2 mRNA downstream 45612 49278149 ~ 49281110 (-) True cd2bp2
XM_021558445.2 mRNA downstream 48923 49267608 ~ 49277799 (-) False prr14
XM_036941388.1 mRNA downstream 48923 49267608 ~ 49277799 (-) True prr14
XM_036941391.1 mRNA upstream 6683 49346540 ~ 49360939 (-) False setd1a
XM_036941393.1 mRNA upstream 6683 49346540 ~ 49360941 (-) False setd1a
XM_036941392.1 mRNA upstream 6683 49346540 ~ 49361234 (-) False setd1a
XM_021558452.2 mRNA upstream 25561 49365418 ~ 49369859 (-) True LOC110486683
NM_001124676.1 mRNA upstream 48301 49388158 ~ 49429351 (-) True kcnh2
TU1349479 other downstream 349314 48973183 ~ 48977408 (-) True LOC110485205
TU1349473 other downstream 390265 48897679 ~ 48936457 (-) True LOC110486656
TU1349502 other downstream 658640 48667788 ~ 48668082 (-) True G1183337
TU1349369 other downstream 855739 48435826 ~ 48470983 (-) True G1183225
TU1349334 other downstream 937004 48379267 ~ 48389718 (-) True G1183196
TU1349475 other upstream 16521 49356378 ~ 49357214 (-) True setd1a
TU1349433 other upstream 147069 49486926 ~ 49504010 (-) False LOC110486687
TU1349434 other upstream 147069 49486926 ~ 49504010 (-) True LOC110486687
TU1349444 other upstream 197342 49537199 ~ 49544276 (-) True LOC118938314
TU1349952 other upstream 345481 49685338 ~ 49688456 (-) True G1183706

Expression Profile