RNA id: XM_021558453.2


Basic Information

Item Value
RNA id XM_021558453.2
length 3106
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC110486684
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49370238 ~ 49384522 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAAAGTCGGAGCgctagaaagatgccagagttccagacttggaattccgagttgcgTGACTGTTCAAAAGTAGTTTCCCAGTTGTATAGAGTTTATCAAATTgacgaatatatatatatttacctcaCCTGCTGAGCAAGTTATCCTAACCTGTTACGAAAAGTTAATTGTGACTTAAACTATATCCCTTCTAGACACAATCCCCAAACATAGTCCACCACCCCTGTTACGCTgttaaaatagtaaaaaaaataacatctTTGCATATTTTCAGAATGGTGTGATTGCTATGATGATTTCCACACTTTAATGGGTTGATTGTAGTCTATGAGCTAGCAAGCGTCACACCGCCGACATTTTCTTCGATGGGAGGAGAGTGATCCCCCATCCCTCTTTGTGGTTACAGCAGCAGTGTTGTTGAAGTCGGAGTCGGGTCAAAGCTAGCAGGGGACTCAATTCGAAAAGCAGGCTCACTTACCCGGATCATCAAAATCGAGCGAATAGCAAATTCAGACTATTGTCCGTAAGCTAATGTGTATCTCGAAGCTTCGTTTAAGCTTTAACGTCGCCTTCGTTGTCCGACAGTGATAGCTATCACGCGGTACAACGcgctactagctagctaatggCGTTAACTGGGCTAGTGTAGTATCCATAACTAACgactgtttgctagctagctgacgttTGGCAGCCTTTGTCATTTGAACTGTTCAAATTTTCAATTCGGAAAGTCTAACAAGCCGTGGGGTATATTTTGTTCCAAGGAAACAGTTGTTTTGCTTTATATAGGCAAGGATTTGCTATAAGAGCTCGTTTATAGAGCTCGTTTATTGAGCTATGTCGCTCCACGGTAAGCGAAAAGAGATCTACAAATACGAAGCGCCATGGACGGTGTATGCAATGAACTGGAGCGTTCGTCCCGACAAACGCTTTCGCCTGGCCCTTGGAAGTTTCGTTGAAGAATATAACAATAAGGTGCAGATTGTGGGTCTGGAGGAGGAGAGTTCAGAGTTCATCTGCAGGAACACCTTTGACCACCCCTACCCCACCACCAAGATCATGTGGATCCCTGACAGCAAGGGTGTTTACCCAGACCTGCTTGCCACTAGCGGGGACTACCTGCGCATCTGGAGGGTCAGTGAAACAGAGACGCGTTTGGAATGCTTACTGAATAACAACAAGAACTCTGACTTCTGTGCCCCACTCACCTCGTTTGACTGGAATGAAGTGGATCCTAATTTACTGGGCACCTCCAGCATTGACACCACCTGTACTATCTGGGGGTTGGAGACTGGCCAAGTGCTGGGCAGAGTCAACCTCGTATCCGGCCACGTCAAGACCCAGCTCATTGCTCATGACAAAGAGGTGTATGACATCGCATTCAGCCGCGCAGGCGGTGGTCGGGACATGTTTGCGTCGGTCGGAGCGGACGGCTCAGTACGCATGTTTGACCTGCGGCACCTAGAACACAGCACCATCATCTATGAAGATCCCCAGCACCACCCCCTACTGCGCCTCTGCTGGAACAAACAGGACCCCAACTACCTGGCCACCATGGCTATGGACGGCATGGAGGTTGTGATTCTGGACGTGCGTGTTCCCTGCACGCCGGTGGCCCGCCTCAACAACCACCGGGCCTGTGTCAACGGCATCGCCTGGGCTCCCCACTCCTCCTGTCACATCTGCACTGCAGCCGACGACCACCAGGCGCTGATATGGGACATCCAGCAGATGCCCAGGGCCATCGAGGACCCTATTCTGGCCTACACAGCCGAGGGGGAGATCAACAATGTCCAGTGGGCCTCCACCCAGCCTGACTGGATCGCCATCGGCTACAACAACTGCCTAGAGATCCTGCGGGTCTAAAGCCAACCTTCACCTCAGGTGTGGATGTGGAGGATGAGGACAATGTGTGGATTCAGAACTTGGACATGTTTTTTTGAGTGGAAGTAAATCTTGCAGGACTGCCTCAAACCACTACTCTGTCCTGGCTGGTTGATGTACGTATGGGAGGCGGTGAGAACTTTGTCCCACTCCACAATGTCCTGGTTTACTCTGTTTTTGATAGAACTAATCCCTGTGTCAAAAGGAGTATGTTGTCGTCtttatttattgttttggtaATCATCAGTGTCTGTACAGCGCCAAAATGCATCAGTGGGTTCAACAATTCTAGATGGTCAATTCATTATGGAGTGAAACAGTGCAGTTCCAACTGTAGACTGCCTCTTGAGTGTGTTtaacctgttgttttagcttgcTATATGACATAACGACATATTTAGGGTCAGGAAACTGGATTTAAAATGACACTCACTGTCAGAAAATGTCATTTAGGATCATCTGGGTGTCTTTCTGAATGGGTTTGAATCCAGTTGTAGACTTCTGAATTTGAAACCATAAGGCTAATTTAAAGGCCTCATAATTatttaaagtgttttttttttatggtttgcTGGTACCAGATCACTTCCATGATTATACTGTGATAATCTGACATATAGTGAAGTGACTGAAGTGTTATGGTTCAATaccacaggaagttggtggtACTTTAGAACAGGCTCGTTCTAACGACTGGAGCGGAaagggtggaatggtatcaaatacatataacacatggtttccaggtgtttgatgccatgccATTTgcttcgttccagccattattgtgagctgtcctcccctcagcagcctcctgtgttcaACACACAGTTGCATGTCTCACAGTTTGGATACTTTGCCATCAGCCCCTTTGGACTAGACCAGAACCTACCAAAAACAAGCTTCATAATGTTTTCTTCATTTTGAGTAGAGTTGCTTGGAACAACTGCAGTTCCTATTCAAGACTGTGTGAAACAAATACGTTTACTTAGCCTAGTACTGAAGGAGAGTGAAACCTTTTTCTCATCTCGCTCTCCCTATCTTTTTATTGTTCTCTGTACTCGAAGGTCAACCCCCTTTTTGCATGTTTGTACAAGGGGAAATGTACATTCTTAAATATATGAACCAAGATATTGATAAGGCAAATCTACATGTAGTAGCTTTTTTCATAAAAGTTTGTATTACCAAATTTGCTCTAATAAATATTCCTTCATGTGT

Function

GO:

id name namespace
GO:0051216 cartilage development biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K11805 DCAF7, HAN11; DDB1- and CUL4-associated factor 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1348796 lncRNA upstream 5036 49364049 ~ 49365202 (+) True G1182724
TU1348781 lncRNA upstream 17877 49350395 ~ 49352361 (+) True G1182711
TU1348777 lncRNA upstream 46065 49323938 ~ 49324173 (+) True G1182707
TU1348775 lncRNA upstream 50107 49319803 ~ 49320131 (+) True G1182705
TU1348768 lncRNA upstream 58971 49310100 ~ 49311267 (+) True G1182700
TU1348797 lncRNA downstream 1700 49386222 ~ 49388178 (+) True G1182725
TU1348824 lncRNA downstream 54456 49438978 ~ 49439207 (+) True G1182750
TU1348827 lncRNA downstream 57203 49441725 ~ 49441944 (+) True G1182753
TU1348831 lncRNA downstream 61933 49446455 ~ 49446770 (+) True G1182757
TU1348835 lncRNA downstream 63726 49448248 ~ 49448677 (+) True G1182761
NM_001124679.1 mRNA upstream 70987 49295336 ~ 49299251 (+) True LOC100136718
LOC110486677 mRNA upstream 86122 49281106 ~ 49284116 (+) False LOC110486677
XR_002468097.2 mRNA upstream 103471 49263529 ~ 49266767 (+) False LOC110486678
XM_021558439.2 mRNA upstream 156819 49210465 ~ 49213419 (+) True LOC110486670
XM_036941385.1 mRNA upstream 167545 49198846 ~ 49202693 (+) False LOC110486671
XM_021558462.2 mRNA downstream 138008 49522530 ~ 49530730 (+) False LOC110486690
XM_021558463.2 mRNA downstream 138008 49522530 ~ 49530730 (+) False LOC110486690
XM_021558466.2 mRNA downstream 138008 49522530 ~ 49530730 (+) False LOC110486690
XM_021558464.2 mRNA downstream 138021 49522543 ~ 49530733 (+) False LOC110486690
XM_021558467.2 mRNA downstream 138024 49522546 ~ 49530733 (+) False LOC110486690
TU1348751 other upstream 86735 49281659 ~ 49283503 (+) True LOC110486677
TU1348666 other upstream 103467 49263650 ~ 49266771 (+) True LOC110486678
TU1348657 other upstream 167548 49200986 ~ 49202690 (+) True LOC110486671
TU1348688 other upstream 251541 49114975 ~ 49118697 (+) True G1182629
TU1348645 other upstream 305096 49063785 ~ 49065142 (+) True G1182595
TU1348815 other downstream 35048 49419570 ~ 49426223 (+) False G1182742
TU1348816 other downstream 35048 49419570 ~ 49422762 (+) True G1182742
TU1348832 other downstream 195804 49580326 ~ 49584562 (+) True ndua4
TU1350070 other downstream 447699 49832221 ~ 49835014 (+) True G1183819
TU1350149 other downstream 498299 49882821 ~ 49883435 (+) True G1183875

Expression Profile