RNA id: XM_021558456.2


Basic Information

Item Value
RNA id XM_021558456.2
length 2970
RNA type mRNA
GC content 0.54
exon number 9
gene id LOC100136168
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49448242 ~ 49456279 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGACAGGGTTTCATTCCAGCCATGGAGAGTCAGAGAGTCCTGTCGTCTTACAGGAAGCGTTTCGGGCCCCAGGGGGCCGGCAGCGTGGGTGGGGGCGTGCGGCTCAGCAGTCTCTCCTCCAGCCGCTTCTCCCTCCATGGGACCCCCCGCCACCTGACCCACTCCAGCACCATTTCCCGTCTCTCCCTGGGGTCGGCTGGAGGGGCCCTGCTCCTGGGGACCCCTGGGAACCGGCTGGACTTCTCGGCTGACTCACTCCTCAAGGCCCAGTACCGGGAGACGCGCACCAACGAGAAGGTGGAGATGATGGGTCTGAACGACCGCTTCGCCAGCTTTATAGAGAAGGTGCGCTTCCTGGAGCAGCAGAACACGGTGCTGGTGACGGAGCTGACCCAACTGAGGGGGAAGGAGCCCAGCCGTCTGGGGGACATCTTCCAGGAGGAGCTGAGGGAGCTGCGCAGGCAGGTGGACGGACTCAGCGCTGGGAAGGCCCggctggagatagagagggacaacATGGCTGCTGACGTGGCCACGCTCAAACAGAGACTGCAAGATGAGATGGTTCTTAGACAGGATGCAGAGAGCAACTTAAACGCCTTTAGACAGGATGTGGATGAGGCGTCTCTGAACCGTGTCCAGTTGGAGAGGAGGATAGACGCGCTGCAGGATGAGATTGCCTTCCTCAAGAAGATCCACGAGGAGGAGCTGCGTGAGCTGCAGGAGCAGCTGATGGCCCAGCAGGTCCATGTGGATGTGGACGTGTCCAAGCCAGACCTGACCGCTGCTCTGAGGGACATCCGGGTCCAGTATGAGTCCGTGGCCTCCTCGAACATTCAGGAGACGGAGGAGTGGTACCGCTCCAAGTTTGTCGACTTGACCGACGCAGCTACTCGGAATGCAGACGCCTTGCGATTGGCCAAACAGGAGGGCAACGAGTACCGCCGGCAACTCCAGGCCATGACCTGTGATGTGGAGGCGCTCCGTGGAACAAACGAGTCTCTGGAGCAGCAGCTGCGTGAGATGGAGGACCGTTTCTCCGTGGAGACGGCTGGTTACCAGGATACGGTGGGTCATCTGGAGGAGGAGATCCAGACTCTGAAGGAGGGGATGGCCAGACACCTGCAGGAGTACCAGGACCTGCTCAACGTCAAACTGGCCCTGGACATAGAGATCGCTACCTACAGGAAGctgctggagggagaggagagcaggaTCACTGTTCCAATGCAGAGCTTCTCCAACCTGCAGTTCAGAGAGACCAGTATGGACACTAAGTTCTCTCCAGAGGCCCATGTCAAGAGGAGCATCATAGTGCGGACTGTGGAGACTAGAGACGGGGAGATCATTAAGGAGTCTACGGCTGAGAGGAAGGAGATTCCTGACAGTCCTTAAAGGACACAAATGGTGCTAGCTATATGTCTGTCACACTGTCCCCACTCCCAAGTAACGCTTAGAGGCCTTGCATGATAATGATACCCTTTCCTGACCAGGCACCTCCCTCTTCTCCAAACCTTAAAGTCCCCCCAGTTGCAACCACCTCACcatccccttcctcccctcttcatCATCACCCCAGACCATGCTACatcattaaatactttttttgcattttgttgaaacaaaaaaaaatccctcATTGCGTCCTTGTTAGCATTTTTGccaaaaaagtattatttttgtATTGCTGTAACTGGAGATAGGCTTTAGTGCTGGGAAGTGTGGCCATGCACCTTAGAAGGAAGGGTCTTGGACTACTACCCTTTGTGATTAACAGACTTAATGCTtggacatttattttttgttcAGCTCATAATAGTGACAGATCAGAGTAGGAAATGTTCTCAATGTGTTTGGATAGTAGCCAGAGAGGAGGCCTTGAAATGTAGTGATTGTTATTCAGCTAGTGGCAGGGGTCGTGCTGAAGTTGTGTGGTTTGAGTGGATGTGAGAAGTCAAGAGGAAAGTACAGTTGCTGGGGTTTGCAGTGGACAGGATGGGTCTCAGACAAGGAAGATGACGTGTGAATGACAGTGCTTTTGGCAGAACTGTTGGTGAAAAGAAAGAAGCTGACATAACTCTCCTCTAGGGCCAAACACCATATCAATTTCATCCCTCCGTCatacactgccccccccccccccccccccccccctctggatGCAGTGTCTCTAGTTCCACTGTACCATTGCAACATCATATTTTAACACTAGAACAGTGCCTGGGCATATCCACTTACGCACCAGGGGTGAGAGGGACAGGATGGAGGTGATACAGGGAGTATTGACGAGACCCTTACCTCTGAAATCCCCTGTTCCTCCCCCAGCCCCATCTCTGGAGTGTCAGTGATTGTAGAGAGACACAAAAGAGGGTGTTGCTGAGATAGCTTGGTGGTGGTGGAGCGGGTGGGGTTATATGGTGTCTCCCTGATGACAGCCCTCTCCAAGAAAccctgggggtgggggggcttggaaggtggaggggggggggggggggggggggggggggttggagggttggaggagaggaggagaggaggagggttgaaggagaggaggagaggacgagggTTGACGGGTGGCTGTCACAACACTAACTGTTAATcccagctctctccctctgcttagCACCCCTGCTGACATAAACAAACTGACACCCCTGTCACCTACCATTCAGTACAGATGGTGACTACAGACTGCTTTTCATTCTTCACTAAAGACAAACCGTAACCGTCTTCTAATGTGCCTGCCTTTCTTTCACATCTCCCTTCCCTCTGCTTTGCCTTCGTGTCTTCACCCGTCAGCTCTAGATACTATTTCTTCTCTTCTTGTCTGCCTCTTACAGTAGCCACAGCTGAACCACACTGCAGTAGGTCTAAGAAAAACCTACAAGATGTGAATATAACCTTAGTTTTGACCAACATTATGACAACCCGCTAACAACAATAAAGCCATTTTGTTTGATTAGTA

Function

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K05640 GFAP; glial fibrillary acidic protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1349832 lncRNA downstream 3520 49444364 ~ 49444722 (-) True G1183595
TU1349829 lncRNA downstream 8889 49439151 ~ 49439353 (-) True G1183592
TU1349827 lncRNA downstream 12261 49435768 ~ 49435981 (-) True G1183590
TU1349825 lncRNA downstream 15071 49432937 ~ 49433171 (-) True G1183588
TU1349461 lncRNA downstream 122715 49325027 ~ 49325527 (-) True G1183297
TU1349842 lncRNA upstream 5213 49461492 ~ 49461846 (-) True G1183604
TU1349843 lncRNA upstream 6220 49462499 ~ 49462737 (-) True G1183605
TU1349455 lncRNA upstream 11490 49467769 ~ 49468817 (-) True LOC110486686
TU1349848 lncRNA upstream 17153 49473432 ~ 49473756 (-) True G1183609
TU1349859 lncRNA upstream 55459 49511738 ~ 49512014 (-) True G1183620
NM_001124676.1 mRNA downstream 18891 49388158 ~ 49429351 (-) True kcnh2
XM_021558452.2 mRNA downstream 78383 49365418 ~ 49369859 (-) True LOC110486683
XM_036941392.1 mRNA downstream 87008 49346540 ~ 49361234 (-) False setd1a
XM_036941393.1 mRNA downstream 87301 49346540 ~ 49360941 (-) False setd1a
XM_036941391.1 mRNA downstream 87303 49346540 ~ 49360939 (-) False setd1a
XM_036941395.1 mRNA upstream 11487 49467766 ~ 49485525 (-) False LOC110486686
XM_021558458.2 mRNA upstream 30538 49486817 ~ 49504039 (-) False LOC110486687
XM_036941396.1 mRNA upstream 30538 49486817 ~ 49504819 (-) False LOC110486687
XM_021558461.2 mRNA upstream 58771 49515050 ~ 49521957 (-) False LOC110486688
XM_021558460.2 mRNA upstream 60033 49516312 ~ 49522522 (-) True LOC110486688
TU1349475 other downstream 91028 49356378 ~ 49357214 (-) True setd1a
TU1349479 other downstream 470834 48973183 ~ 48977408 (-) True LOC110485205
TU1349473 other downstream 511785 48897679 ~ 48936457 (-) True LOC110486656
TU1349502 other downstream 780160 48667788 ~ 48668082 (-) True G1183337
TU1349369 other downstream 977259 48435826 ~ 48470983 (-) True G1183225
TU1349433 other upstream 30647 49486926 ~ 49504010 (-) False LOC110486687
TU1349434 other upstream 30647 49486926 ~ 49504010 (-) True LOC110486687
TU1349444 other upstream 80920 49537199 ~ 49544276 (-) True LOC118938314
TU1349952 other upstream 229059 49685338 ~ 49688456 (-) True G1183706
TU1350091 other upstream 379384 49835663 ~ 49836332 (-) True LOC110486698

Expression Profile