RNA id: XM_036941395.1


Basic Information

Item Value
RNA id XM_036941395.1
length 6145
RNA type mRNA
GC content 0.46
exon number 17
gene id LOC110486686
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49467766 ~ 49485525 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGAGCAAGAAATCGACAGAGGAACAGCGCGCCCCCGAGAAAAGCACGGAGTCGTTTTAGTTACTGTATGCTTTACCCAAATGGAACACAAATCTGAGTTATTATGATGCACCTTTGCCCATGACCAACCACGGCATTCAGAATATTGAATCATAAGCCTACAAAGCATTGGGAATATACACCTTTTTCTCGTTTTGTAAGAAGCGTTCTATAGGGGTTCCGGTGACGGATTGTTTTTTCTGTCAGGAAATTGGCtgcattaaaaatacatttgactttATGTAGGTGAGCATCAGGACCTGAATTTATGGAATATCTTTCGCTTAAGTCTTCTGAACAGTTGGTGCATGTTTATCACTTCTATTCTACAAAGAAAGCACCGTTCTTTCCACTTTTGTTGAGTTCTTCCACTGCATATCGGGCACCGCGGAGATGGTAAAAGTTCAGTTATGCGCACATTATATTTTCTCGATAAAACCATTCGATCATAACTTGTTATCGATGCAAATGTATTAATTGTGTGTGGTCAACTATGTGTTGCGTCTGTCTCCtataattttacataattattccgAAAATAATAGCCTGCTTTCGTAGTTGAATCTTCATCTCCCATTTCCACCATGTTGTGTGTTGAATTACTTTTTTTTACCTGATTTCTTTGTTATAAAAAGTCTGGTGCCTGTTTGCAGTTTATGGATTTATAATAATTATTCTGTACAGAGATGGAACAATACAGTTAGGAGAGAAAAAGGGCATAGAACAAAAAGGAAAAAGCTGCAAATTTAGCAGGAAAAGAGGCCATCAAAATCACGGAAATCGCTTCGTCCTTTTCCTTTGGTGTACTGTTACTGTTGCAAATGGATTTCATAAAGGCAACACGGTTATTGTTACATCTTTTGTGTTAGTTCACCCGTTCCATGCTGACAAAATGTCACTGGGAAATATTGATTATTGAATAGAGAAAATTATGATGGCCTATGTTCGTTTTTTCTATTCTAGTGTGTAAATTGGGCTTCTTGTTCCACAATGAAATGCCATCGGACGTTTTTCTTTTTTGATAACGTTTGGAAATATGGGCAAGTTGTCGAACGTTTTTGTGGTGACGGAAGGTTGACACTTTATTTTTTGGTCACTTTCTGAGCGCAGTCTAATGTAACGGATTTTGGACTATATTTCTGTTAAATTAATTTGGCATTAGAGAAATCCAAATGTATACGCATGTACAGTGACGATCTCGATGTGACGACATTGTGTTTTCTAGGCCTACTGCTCATTAGAATTTATATTTACTGGCTAGTGCGTAATAAACTTTCGTGGACCAGCGCGCGCACTAGTGCCCCCGCACCTGGGGGCAACCCCACCATGGCGCCCTCATCCCTCTGTATCTCGGTGTGGTTGTGTGAGTGAATCAACAACAAAGACTGGGGATCAAAGATGAGGATGATGCTCTGGAGATAACGGTTCAAACTGACGCTGCAGCATCTCTCCTGAGCACCCAGTTAGAAGTTGAACCAGGACCCCCGCTAGAGGGAACGGCTCTCATCTTCCAGACAGAGGTTAATCATCAGGGCAACAACACAGGATGTTGATGGGTGGCACTGCAGAGTGAGGAGTCTGAAGATCTGAAGGTCTCTGAAGGTGGTTGGCTTAgacagtgctcacacacacatcgCCAAAATGAATGAGCGTCAGGCTCTCCACTCCATAATGAAGGACCTAGTGGCCCTCCAGATGACGAGGCGCCAGCCTGGGCCCCCTTATGACACGGGGAAACCCAAGACTCTGCCCAACCCTGCCCCTGTTAAGAGACAGGACGATGTCAGAATAAAGTTTGAGTtcagtggagagaggagGATACTGATGTTTGGGAGGCCTGTGCAGTTTGAAGAAATCCAACAGAAGGTCAAGACTGTCTTTGGCCAACAGCTAGACTTGCACTATATGAACAATGAGCTGTCCATCCCTCTGCGTGGTCAGGATGACCTGGACAAGGCCATTGACCTGCTGGACCGCAGCTCCAAGATTAAGAGCATCAAGATCTTGCTGCTGATGCAGGAGCAGTGCaatGcgtcaccctctccctctccctcttcccaccACACGGTGAGTAAGCAGGTGAGGATCAAAGCCTCCCAGTCCACGGGTGATGTCAGCACGGTGTACCAGCCCTCCGAGCCCAGGGGGCGCCACCTCTCCACCAGCTCTCAGAACACAGGCCGTAGCTCCCCCCCTCCAGGCTATGTCCCTGAGCGGCAGCAGAGGATCGCCCGCCAGGGCTCCTACACCAGCATCAACAGTGAGGGAGAGTTCATCCCAGAGAGCGACCAGTGTGTGCTGGACCCCTGGAGCAGTGCAGAGAACTCTGTCTCAGGAAGCTGCCAGTCGCTGGACAGTAGCTCAGACAGCCCCTCCCTGAGGAAGTCACGCATGCACCGAGCCAAGAGCTACCCTGATAACCGGCAGCAGGAGAACGTCTCTGaCCGGGAGAACCATGTGTATGATAAGGTGGTGGGGAAGGGAGGGACATACCCCCGCAGGTACCATGTCTCCCTGCATCACAAGGACCATAGTGAAGGTCGGAGAACGTTCCCGCGGATCCGTCGCCCCCAGGGTAACCTGTTCACCCTGGTGCCCTCACGGCGCTCCCTCAACGGCAGCGAGGAGAGTCTGGGCAGCTGGCAGCTAGTGGACAAGCAGGGCAGGCTCCGCCCACAGGAGCGCCCTGTCGCCCACAAGTCCCCCAGTGCTCCAATGACGTGGAGGCGGGGCAAGCTGCTGGGCCAGGGGGCGTTTGGGAGGGTTTACCTGTGTTACGATGTGGACACGGGACGGGAGCTGGCCGCCAAGCAGGTGGTGTTTGACCCGGACAGTCCTGACACCAGCAAGgaggTGAGTGCTCTGGAGTGTGAGATCCAGTTGTTAAAGAACCTCCACCACGAACGCATCGTCCAGTACTACGGCTGCCTGAGGGACCACAACGAAAAGACCCTCACCATCTTCATGGAGTACATGCCGGGGGGTTCAGTCAAAGACCAGTTGAAGGCCTACGGGGCGCTGACGGAAAACGTGACGCGGAAGTACACACGGCAGATCCTGGAGGGCATGTCCTATCTGCACAGCAACATGATCGTTCACCGTGACATCAAAGGTGCCAACATCCTGCGGGATTCGGCGGGAAACGTGAAGCTGGGAGATTTTGGCGCCAGCAAGAGGCTGCAGACCATCTGCATGTCTGGCACGGGCATCCGCTCGGTCACTGGCACCCCCTACTGGATGAGCCCCGAGGTGATCAGCGGAGAGGGCTACGGCAGGAAGGCTGACGTCTGGAGCCTGGGCTGCACAGTGGTGGAGATGCTGACAGAGAAGCCTCCCTGGGCCGAATACGAGGCCATGGCAGCCATCTTTAAGATCGCCACCCAGCCCACCAAACCCCTGCTGCCCTCACACACCTCGGACCACACCCGTGACTTCATCCACCGCATCTTTGTGGAGGCCAAGCACCGGCCCAGTGCTGAGGAGCTGCTCAGACACCCCTTCTCCCAGATCCTCTGCTGAGGGGAAGTACTAgtacactctctctgtctcaaccGCTCCTCGGGACTCAAGGCCTACAGCTGACATCTAGACTCTAGACTTGGAATTTGGAACTTGGTCCTTTCCATCCTACAGCTCTCTCCCCAAACCAGACTCACCACCAGTCACACTCATTCCTTAACCCACAAATACACATGATCCATTATGATGGATAATAGCACAGTGCCATTATTCCAAGCTGTTAACGACAATTATCAAATTCACCTCCAACTTCCCCCACTAGGGGGAGCTATATGACTGATCAGTGTTCAGCTGTCTGCTGTGGAGAACTGGACCCACCAACTCCATACGAACTGAATTGTTTCAGCTATCATCTTGGTGGTCTGTGAGAGgattaaacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagacagacactccaaACACATCAAATCTATTATATGTGGCTCAAGATGGGATTTGATCAAGCACCGCCACCGAATGTGCCTTTCAAATATGCCAAAGTGTCCCCTCCTAAGTTTACATTCTCTAGATGGGCTGTTAGATGAGACCCCTGAGGTAATGAACTGTTCATATGGGACTTACAGTAAGCTTGAGCAGAGCAGTGTCTGGTCTACTTAGGCCAAGACAGCAGACCCACAGCCACAGCTCAGTGCTTCAACATGGTAACTGATGAAACCAACAGATGCACCACTCAGTGTTATAGAGACGGGATGGATTTAATTTTTCACTTTCTCCTCTGATCCGTCTCTGATATTCTTTGTGATTTTGAGAAAGTGCCTCTTCATGGTCTTTTGAAGACTCACAGTCCCTGATGGAAGCCCATGCTGATCTGTCCTGTCCTCACCATACAACATGGAACCAGAGCCATCAGTGTTTTTGTGTTGTCATTAGGACCTTCACAGTAGACCATTGTGATGACTGTGCCTTATACTCCAActctccactgcagcccctcaGTATCACAGCCCAGGGTTTTCTGAGTGTACCAAAAATGACCGATTTCATTCATGAAGGGGTTGGTTTCCAGTTTGGTTGGAGGATATGCTAACTACACAATATTACAAATTATATTGTACTTTGTGATTGAAAGAGAGATTTTATTTTAGTCTTAGACAAATACAATCCTAATGCCTTGATTTGAAAGTGAGTTGCCATTAGGTTTACCAGCTTTCTATGCGTTGACAAGTGTATCTAGGAAAATGCTACGCCAAACAGTGGAACTCTGCCATTTAGGATTCATTTGAGTCAGATGCACTTTTATGTCAAATTAATGTTGTTGGTTATTGTTCGCCTTACGAAATTaactttttttaaaaactttaaatattacatttctttcacttttatttaaatcCCTATGTTCATCCATTCCTgaatttttatattcaaatatatatgtataaatatattttttatatattgacTCTAGACAATTTGAAATCTAATGAAGATGCATTTAGACCTATGAGATAAATGTTGCCGTTGGAAATGATAAATTGTTAAAGCAGCTGGTTTTGCAGAAATTACAACATTGGGGTTTATTAGTGAAACACTTTGGGTGGAAAACGACCTCTGGCTATCTTACCTGGTCTCTGCTCCAAAACAAGAAACATATCCACATTCCTAGCTCCAGTATAATATATTATGTCTAATGGTCCATGCTTTATTAAACACTGTTCCATTGGACCCTTCCAGTTGGACTGCCCTGTCAAACCTCTCACAGTTTCACTACTTCACTAACAAGGCCACCGCCTAGGATTTAAAGGCTGCTGAACTTCCTCCATATTTCTCCTTGCTGGCGTGATGTGTGGGAAATAGAGGGGAAGTATGTGAGGTGTAATTTTAAGAGTATGCACTAGAATGCTGTGTCTCACCAGAATAACCTTCTCTTAGTGTCATTCTTGCAGAGCAGAGAGGCTGAATGTGTGCGTTAGTTAGACTGAGCTGAGCAGGAAAGGGATGGAGGAGTTCTGATCAGGTAGATGCCAGAGACCAGGGTTCCACCCAACATGACGACTTTGTTTAGCTCAGGGTTCGAGAGACCGACCGGTGCCCAATGTCTGGGGCCCTCCACACTGAGCAAAGGGCTTTCTACAATTACCTTTTTTCGTTTTATTTTCCATTTATTTCCATTTATTTCAGTGTTACTGGCTCTAAACTACTTTCATAAGTGAATCAAATGGATATCATGTGGCTGCTAGATGTTAAAGAAGGCAGCTAAGAATCAGTTCAGTATTAGAAATGGTCCTGTTATATACAAAGAGCCAAAACAAATGTTTCTGTTAACAGAAGAACCCTGGGGTAAGCAAATGAAACAGGAGTTAAACGTTTAGATATATACATGTATGTAAATGTATAAATGAGTATGTTTAATGACAGGGGACTTGCAGTGCAAAGTCACTCCAgtttatcaaatgtatttacgtAGAAAAAGGAACAGTATGTTAAATGACATTGTTTTTCTATATCTTTGAGTGCCTAATTTCAAAAACAAATAAATGTTCTTTGTCTCTGGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1349843 lncRNA downstream 5029 49462499 ~ 49462737 (-) True G1183605
TU1349842 lncRNA downstream 5920 49461492 ~ 49461846 (-) True G1183604
TU1349832 lncRNA downstream 23044 49444364 ~ 49444722 (-) True G1183595
TU1349829 lncRNA downstream 28413 49439151 ~ 49439353 (-) True G1183592
TU1349827 lncRNA downstream 31785 49435768 ~ 49435981 (-) True G1183590
TU1349859 lncRNA upstream 26213 49511738 ~ 49512014 (-) True G1183620
TU1349863 lncRNA upstream 38059 49523584 ~ 49524166 (-) True G1183624
TU1349883 lncRNA upstream 84449 49569974 ~ 49570178 (-) True G1183641
TU1349871 lncRNA upstream 86193 49571718 ~ 49577233 (-) True G1183630
TU1349869 lncRNA upstream 94769 49580294 ~ 49663941 (-) True G1183629
XM_021558456.2 mRNA downstream 11487 49448242 ~ 49456279 (-) True LOC100136168
NM_001124676.1 mRNA downstream 38415 49388158 ~ 49429351 (-) True kcnh2
XM_021558452.2 mRNA downstream 97907 49365418 ~ 49369859 (-) True LOC110486683
XM_036941392.1 mRNA downstream 106532 49346540 ~ 49361234 (-) False setd1a
XM_036941393.1 mRNA downstream 106825 49346540 ~ 49360941 (-) False setd1a
XM_021558458.2 mRNA upstream 1292 49486817 ~ 49504039 (-) False LOC110486687
XM_036941396.1 mRNA upstream 1292 49486817 ~ 49504819 (-) False LOC110486687
XM_021558461.2 mRNA upstream 29525 49515050 ~ 49521957 (-) False LOC110486688
XM_021558460.2 mRNA upstream 30787 49516312 ~ 49522522 (-) True LOC110486688
XM_021558470.2 mRNA upstream 45246 49530771 ~ 49533590 (-) True LOC110486692
TU1349475 other downstream 110552 49356378 ~ 49357214 (-) True setd1a
TU1349479 other downstream 490358 48973183 ~ 48977408 (-) True LOC110485205
TU1349473 other downstream 531309 48897679 ~ 48936457 (-) True LOC110486656
TU1349502 other downstream 799684 48667788 ~ 48668082 (-) True G1183337
TU1349369 other downstream 996783 48435826 ~ 48470983 (-) True G1183225
TU1349433 other upstream 1401 49486926 ~ 49504010 (-) False LOC110486687
TU1349434 other upstream 1401 49486926 ~ 49504010 (-) True LOC110486687
TU1349444 other upstream 51674 49537199 ~ 49544276 (-) True LOC118938314
TU1349952 other upstream 199813 49685338 ~ 49688456 (-) True G1183706
TU1350091 other upstream 350138 49835663 ~ 49836332 (-) True LOC110486698

Expression Profile