RNA id: TU1349455


Basic Information

Item Value
RNA id TU1349455
length 1049
lncRNA type sense_over
GC content 0.40
exon number 1
gene id LOC110486686
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49467766 ~ 49485525 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAGATAAATGTTGCCGTTGGAAATGATAAATTGTTAAAGCAGCTGGTTTTGCAGAAATTACAACATTGGGGTTTATTAGTGAAACACTTTGGGTGGAAAACGACCTCTGGCTATCTTACCTGGTCTCTGCTCCAAAACAAGAAACATATCCACATTCCTAGCTCCAGTATAATATATTATGTCTAATGGTCCATGCTTTATTAAACACTGTTCCATTGGACCCTTCCAGTTGGACTGCCCTGTCAAACCTCTCACAGTTTCACTACTTCACTAACAAGGCCACCGCCTAGGATTTAAAGGCTGCTGAACTTCCTCCATATTTCTCCTTGCTGGCGTGATGTGTGGGAAATAGAGGGGAAGTATGTGAGGTGTAATTTTAAGAGTATGCACTAGAATGCTGTGTCTCACCAGAATAACCTTCTCTTAGTGTCATTCTTGCAGAGCAGAGAGGCTGAATGTGTGCGTTAGTTAGACTGAGCTGAGCAGGAAAGGGATGGAGGAGTTCTGATCAGGTAGATGCCAGAGACCAGGGTTCCACCCAACATGACGACTTTGTTTAGCTCAGGGTTCGAGAGACCGACCGGTGCCCAATGTCTGGGGCCCTCCACACTGAGCAAAGGGCTTTCTACAATTACCTTTTTTCGTTTTATTTTCCATTTATTTCCATTTATTTCAGTGTTACTGGCTCTAAACTACTTTCATAAGTGAATCAAATGGATATCATGTGGCTGCTAGATGTTAAAGAAGGCAGCTAAGAATCAGTTCAGTATTAGAAATGGTCCTGTTATATACAAAGAGCCAAAACAAATGTTTCTGTTAACAGAAGAACCCTGGGGTAAGCAAATGAAACAGGAGTTAAACGTTTAGATATATACATGTATGTAAATGTATAAATGAGTATGTTTAATGACAGGGGACTTGCAGTGCAAAGTCACTCCAgtttatcaaatgtatttacgtAGAAAAAGGAACAGTATGTTAAATGACATTGTTTTTCTATATCTTTGAGTGCCTAATTTCAAAAACAAATAAATGTTCTTTGTCTCTG

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1349843 lncRNA downstream 5032 49462499 ~ 49462737 (-) True G1183605
TU1349842 lncRNA downstream 5923 49461492 ~ 49461846 (-) True G1183604
TU1349832 lncRNA downstream 23047 49444364 ~ 49444722 (-) True G1183595
TU1349829 lncRNA downstream 28416 49439151 ~ 49439353 (-) True G1183592
TU1349827 lncRNA downstream 31788 49435768 ~ 49435981 (-) True G1183590
TU1349848 lncRNA upstream 4615 49473432 ~ 49473756 (-) True G1183609
TU1349859 lncRNA upstream 42921 49511738 ~ 49512014 (-) True G1183620
TU1349863 lncRNA upstream 54767 49523584 ~ 49524166 (-) True G1183624
TU1349883 lncRNA upstream 101157 49569974 ~ 49570178 (-) True G1183641
TU1349871 lncRNA upstream 102901 49571718 ~ 49577233 (-) True G1183630
XM_021558456.2 mRNA downstream 11490 49448242 ~ 49456279 (-) True LOC100136168
NM_001124676.1 mRNA downstream 38418 49388158 ~ 49429351 (-) True kcnh2
XM_021558452.2 mRNA downstream 97910 49365418 ~ 49369859 (-) True LOC110486683
XM_036941392.1 mRNA downstream 106535 49346540 ~ 49361234 (-) False setd1a
XM_036941393.1 mRNA downstream 106828 49346540 ~ 49360941 (-) False setd1a
XM_021558458.2 mRNA upstream 18000 49486817 ~ 49504039 (-) False LOC110486687
XM_036941396.1 mRNA upstream 18000 49486817 ~ 49504819 (-) False LOC110486687
XM_021558461.2 mRNA upstream 46233 49515050 ~ 49521957 (-) False LOC110486688
XM_021558460.2 mRNA upstream 47495 49516312 ~ 49522522 (-) True LOC110486688
XM_021558470.2 mRNA upstream 61954 49530771 ~ 49533590 (-) True LOC110486692
TU1349475 other downstream 110555 49356378 ~ 49357214 (-) True setd1a
TU1349479 other downstream 490361 48973183 ~ 48977408 (-) True LOC110485205
TU1349473 other downstream 531312 48897679 ~ 48936457 (-) True LOC110486656
TU1349502 other downstream 799687 48667788 ~ 48668082 (-) True G1183337
TU1349369 other downstream 996786 48435826 ~ 48470983 (-) True G1183225
TU1349433 other upstream 18109 49486926 ~ 49504010 (-) False LOC110486687
TU1349434 other upstream 18109 49486926 ~ 49504010 (-) True LOC110486687
TU1349444 other upstream 68382 49537199 ~ 49544276 (-) True LOC118938314
TU1349952 other upstream 216521 49685338 ~ 49688456 (-) True G1183706
TU1350091 other upstream 366846 49835663 ~ 49836332 (-) True LOC110486698

Expression Profile