RNA id: XM_021558467.2


Basic Information

Item Value
RNA id XM_021558467.2
length 2130
RNA type mRNA
GC content 0.51
exon number 11
gene id LOC110486690
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49522530 ~ 49530733 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATTAGTTTCCGCCCCTTTTCGATAATAGTTGTTTGTTGAAAATTTGAGCTAACAAACTCACTTCACCAaatactagctagctatttctTCAAGTTAACATCCAGCGGTTCTAGCTGCCACAATCGACAGATCCATGTCTTTTCTGGCCCATGAAGACAGCCACGAGAGCCTGACCTCAGTCCCACGGCGGGGCACCATGGGAAGCTTCCTCCCCGACAGCAGCGCCTATGAGCTCCTGACCATCATAGGTCGAGGCCTGGAGGACTTGATGACCGTTAACCTTGCCAGATACAGACCCACAGGGGAACACGTAGCAATCCGTCGGATTGACTTGGAGTCCTGCACCAATGAAATGGTCAACCACCTGCAGgctGAGCTCCATGTATCTAAGCTGTTCCACCACTCCAGCATCCTGCCCTACAGGAGCATCTTCATAGCAGAGAACGAGCTGTGGGTCATCTCTCCCTTCATGGCCTATGGGTCGGCCAGAGACCTGATCAGCAGCCACTTCACTGATGGGATGAATGAGCTGGCCATCGCCTACATCCTACTGGGCATGCTCAAAGCCCTGGACTACATCCACCACATGGGCTATGTACACCGGAGCGTGAAGGCCAGCCATGTGTTGATCTCGGTAGACGGTCAGGTGTGTATGTCTGGTCTGAGGAGCATCATCAGTCTGATCAGTCACGGCCAGCGGGCCAGAGTGGTCCATGACTTCCCCCAGTACAGCATCAAGGTGCTTCCCTGGCTCAGCCCAGAGGTGTTGCAGCAGAATCTGCAGGGATACGACTTCCGGTCAGACATCTACAGTCTTGGCATCACAGCCTGTGAGCTAGCCAATGGACATGTGCCCTTCAAAGACATGCCAGCCACACAGATGTTGCTGGAGAAGCTGAACGGGACAGTCCCCTGTCTGTTGGACACCACCACCATCCCCCCAGAGGAGCTGTCCATGAAGCCCTCCCGCTCTGGGGCTGACTCTGGGATCTGTGAAGGCCCCAGCACCGGAGGGGCCCACCACTCTAATGGAGAGCCCTCCTCCTCGGGGAGCCACCCCTACAGTCGTACCTTTTCTCCCCACTTCCATGCCTTTGTGGAGCTGTGTCTCCAGAGGGACCCAGAGAAGAGACCCTCAGCCAGTGCTCTCATTGGTCATTCCTTCTTCAAACAGATCAAGCGTCGGCCATCGGAGGCTCTGCCTGAGCTGTTCCGGCCCATAACGCCCATCACGGGCTTTGAGAGTACCCAGCCTCAGGACATTGCCTCTGTACTGGCCAGCCTGGAGTCTGGCCTGAGCCACATGGATGTGGATGACTGGGACTTCTGACCACAGAGGAACaggaaagaggtgtgtgtgtgtagtaaccaAGAGATGCTCTGAGAAGACTTCGGACTGGATTTACGCTTTGTTCTTATTAAATGGCCCATGTAAATAATTCAAAGCAGTTTCTCCTCCCTTTGACTGGGTTTAAAAGCTAGCTGCCATCTCTCTAGTCTAAAAGATGCATGAGCAGACAGACCCTTTCACTGACTGACACCCAATTCCTCTCATGCACACATCTCTCCAGATTCTACTACAGCTCTGGACCCGTCGAAGAACCGTATGGGCGAGTATGTCCAGTCAGCTTTCACTTGCCAATGGAGATGTTTCATTAAAGGTATAGCAGAGACTACCTATTTGTATCTGAGCTGTACTTGACCCATCTGTTGACATTAAAAACCTGGAACTGACCGCATTACCAAGGGTTGATCCAATCAGCCATCTAGCCAGCACAACAGATGGAAGATTCCAGAAGTTTGTCCAAGGCAAACACTGTCTGGTTCGTGATAGCATTTCCTCACAGCTGAGAAGAGGCTCTCATACTGAACCGTCAGTTTTacagagagggaaaaaaaatctgtttctAACTGAaaccctcaactgaagctagcaaAGCAAGTTAACACTAGACTGTGCCAACTGAGGTCCATGTATTTGATTAACCTTCCTGTTGACCATTTATGTCCTGCAAAAAAGTGAATGTTACAATGGTGCTTGTTTCAGATAGTTTGTCTGGGTTTCATGAAGGGAAAGTGTTGGGAGTGTCAACTATTTTACTTGATAATAAATACCTTTCACCTCCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1348872 lncRNA upstream 13636 49508693 ~ 49508910 (+) True G1182795
TU1348861 lncRNA upstream 53737 49467765 ~ 49468809 (+) True G1182784
TU1348847 lncRNA upstream 55465 49466691 ~ 49467081 (+) True G1182773
TU1348846 lncRNA upstream 56337 49465715 ~ 49466209 (+) True G1182772
TU1348845 lncRNA upstream 56890 49464439 ~ 49465656 (+) True G1182771
TU1348886 lncRNA downstream 37630 49568363 ~ 49568629 (+) True G1182809
TU1349973 lncRNA downstream 184393 49715126 ~ 49715459 (+) True G1183727
TU1349975 lncRNA downstream 201613 49732346 ~ 49732859 (+) True G1183729
TU1349976 lncRNA downstream 202646 49733379 ~ 49733590 (+) True G1183730
TU1349983 lncRNA downstream 205531 49736264 ~ 49736493 (+) True G1183737
XM_021558453.2 mRNA upstream 138024 49370238 ~ 49384522 (+) True LOC110486684
NM_001124679.1 mRNA upstream 223295 49295336 ~ 49299251 (+) True LOC100136718
LOC110486677 mRNA upstream 238430 49281106 ~ 49284116 (+) False LOC110486677
XR_002468097.2 mRNA upstream 255779 49263529 ~ 49266767 (+) False LOC110486678
XM_021558439.2 mRNA upstream 309127 49210465 ~ 49213419 (+) True LOC110486670
XM_036941399.1 mRNA downstream 2287 49533020 ~ 49551503 (+) False LOC110486693
XM_036941400.1 mRNA downstream 2290 49533023 ~ 49551503 (+) False LOC110486693
XM_036941397.1 mRNA downstream 3204 49533937 ~ 49551503 (+) False LOC110486693
XM_036941398.1 mRNA downstream 3208 49533941 ~ 49551503 (+) True LOC110486693
XM_021558469.2 mRNA downstream 20989 49551722 ~ 49557177 (+) True LOC110486691
TU1348815 other upstream 96323 49419570 ~ 49426223 (+) False G1182742
TU1348816 other upstream 99784 49419570 ~ 49422762 (+) True G1182742
TU1348751 other upstream 239043 49281659 ~ 49283503 (+) True LOC110486677
TU1348666 other upstream 255775 49263650 ~ 49266771 (+) True LOC110486678
TU1348657 other upstream 319856 49200986 ~ 49202690 (+) True LOC110486671
TU1348832 other downstream 49593 49580326 ~ 49584562 (+) True ndua4
TU1350070 other downstream 301488 49832221 ~ 49835014 (+) True G1183819
TU1350149 other downstream 352088 49882821 ~ 49883435 (+) True G1183875
TU1350772 other downstream 1455080 50985813 ~ 50986566 (+) True G1184435
TU1351847 other downstream 1853439 51384172 ~ 51392082 (+) True LOC110487554

Expression Profile