RNA id: XM_036941399.1


Basic Information

Item Value
RNA id XM_036941399.1
length 2415
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC110486693
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49533020 ~ 49551503 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAAAGACTGATTCGTTTGTAGTCAGCCATGCGACGTTACCCTTTGAATCATAGGGTTTGCTGAACCCGTCTTTTTTTCTTTTCTGACAACGGCATTCTTGTCTTCGTCACTGTTGCCATCTGACAATGGAGGAAAGCATCAGCATATTCTCGGTGAAGACACTCCTGGAAAAGTACACAGCCGAGCCCATCGATGACTCATCCGAGGAGTTTGTTAACTTCGCTGCAATCTTGGAACACATCCTCAGCCACCGCTTCAAAGGTAACATGGCAGGTCCAGGAAGCTGGTTCATCTCAGATGGCCAGCGAAGTTTCTGGGACTACATCCGGCTGGCATGCAGCAAGGTGCAGAACAACTGCATCGCCAGCATCGAAAACATTGAGAACATCAGCACCTCACGAGCCAAGGGTCGGGCATGGATCCGTGTGGCGCTGATGGAGAAGCGTCTGTCTGAGTATGTGGCCACAGCCCTGAGGGACACACGGACAACCAGGAGGTTCTATGATGATGGAGCCATTATACTGAGAGAGGAGGCCACTGTTCTGACAGGCATGCTCATTGGCCTCAGTGCCATAGACTTCAGTTTTTGCTTGAAGGGGGAGGCGCTGGATGGTAAGTCCCCTGCTGTGATTGACTTCACACCTTACCTGAAGTTCACTCagagCTATGACTACCTGAGTGATGAGGATGACCGGTGCAGTGTGGACAGCAGTGCCAGTGACGAAAGTGTCCCAGAACACCCATACATCCCCCTGGTCACTGACGAGGAGAGCTGGAGGAACAAGTGTCGCAAGATGGAGCAGAGGTTTAAGATTGTGTATGCACAGAAGGGCTACCTGGAGGAGCTGGTGCGTCTGCGGGAGTCCCAGCTGAAGAACGTGGAGACGGAGAACAAGAAGCTGAGTGCCAGGCTGGACGAGCTCAGAGTCCAGAGCCTGCAGGAGAAGAAGGAGCTGGAGTCCATCGTACTGGAGCTGCAGGCACAGCTCACTGCCCTCATCCCCTGTGATTCCTCCCACTTGACTAAGGATCTGTCCATCCCTCTGGTCAACCAGTGGCCCTCCATACGAGGCTACAACAACCAGGGGGACGTCAAGCTCTTCCGCAGGAGAAGCTTCCACAGTTTGGAGCAGCTCTCAGCTGACGTCAGTCTGAACTCTGATTCCCAGAAGACCGATGGGCAACAGAACGGAGATACAGGAAAAGACTACACCCCTTCTATGCGGGGTCTCTGTGGCTCTCTGGCCTCTCTCCCCAGCTGCAAGTCCATGTCCAGCCTCAAGTCCAGTGAGTGTCTGGTCAACATCAGCATGGAACCCAGCCCTGCACTCTCCCCCAGCTAGGGGGCGCCATGCCAACAGAGCTCTGTCTGCAAAGCGCAAAGCCAACAACCAACCAACCCCAACCGCCTGCCTCAACCTGGAGACACTCAATAGATCATGAAcatctacctacctactgtcactATTAACAGTTACCAACAAAACCCTTTTTCAACCAAACCCTTCTCCAACCAACTCCACTCAACCCACTGCTTCATGTCTGCAAAGATTAGAGGGGGAAAAGCTCTTCAATATTTCTGGATTTTTGTGTGGATTAAATTAAAGTTATAATGAAACTAAAAGGATCCTAGTTCGTCTGTGCCCCTCCTCACCCACACCCTCTCTCATATCCTCACACTGTCCATCCTGTTCTTTcactgttgtgtgtgtgaatTCCTATGTCAAAATGTTGGCCTGTATTTAATGCCTTTTGGACACATCTAACTAGCGTGATTCAAAGCTACAAAACTATCCAAAAGcatatttatttatctatttaaattctcctctcctctagatcTCCTTATCCAACTCTTTCTCTGCACCTGACACATCTGGTCATtgtactgtctgtgtgtcagtctgtcccAGCCCTGCCTCAGCCTATACTATCCTCTTTCCTGCCTGTCAAAATGACAGACAAACTGGAATGACGCACTTGCGATTAAGTCAGAACACTTGGAGGAGAAGGCTGAACTGAATTCTAACAAAAACATCAGCTATTCTTAGGTGTTTGAGTGGCTGCAGGTTGAGTGTCGCTAACATAATGGCTAGATGTGTATTTGATGCATGTGGCTGAATGATATTGGCATTGTTCCTCCATTGTACTGGGTTTTGGATGGCCTGAATCTCCAAATCATTGACCTGCTTGAGTAATCAGACATTACTGTTTAAGTATGTGTTCATGTGTGCAGCAATTGGTTACGTCTGTCTATCAACAGTTTTGTTGTCACGTTGCTTTTTATATTTTGTTGATGAATCTGATTTTATAAATCAAGTGTGCTGTTATTTTTACACATGCATATTTGGTTATTTTTGTTCAATGACCTATGCTATTAGTTGCAATAAACTGCCTTATTTTTGTTATGTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1348872 lncRNA upstream 24110 49508693 ~ 49508910 (+) True G1182795
TU1348861 lncRNA upstream 64211 49467765 ~ 49468809 (+) True G1182784
TU1348847 lncRNA upstream 65939 49466691 ~ 49467081 (+) True G1182773
TU1348846 lncRNA upstream 66811 49465715 ~ 49466209 (+) True G1182772
TU1348845 lncRNA upstream 67364 49464439 ~ 49465656 (+) True G1182771
TU1348886 lncRNA downstream 16860 49568363 ~ 49568629 (+) True G1182809
TU1349973 lncRNA downstream 163623 49715126 ~ 49715459 (+) True G1183727
TU1349975 lncRNA downstream 180843 49732346 ~ 49732859 (+) True G1183729
TU1349976 lncRNA downstream 181876 49733379 ~ 49733590 (+) True G1183730
TU1349983 lncRNA downstream 184761 49736264 ~ 49736493 (+) True G1183737
XM_021558464.2 mRNA upstream 2287 49522543 ~ 49530733 (+) False LOC110486690
XM_021558467.2 mRNA upstream 2287 49522546 ~ 49530733 (+) False LOC110486690
XM_036941401.1 mRNA upstream 2287 49522611 ~ 49530733 (+) False LOC110486690
XM_036941402.1 mRNA upstream 2287 49522627 ~ 49530733 (+) True LOC110486690
XM_021558462.2 mRNA upstream 2290 49522530 ~ 49530730 (+) False LOC110486690
XM_021558469.2 mRNA downstream 219 49551722 ~ 49557177 (+) True LOC110486691
XM_036941403.1 mRNA downstream 7285 49558788 ~ 49567825 (+) False LOC110486695
XM_021558473.2 mRNA downstream 7286 49558789 ~ 49567825 (+) False LOC110486695
XM_021558474.2 mRNA downstream 12690 49564193 ~ 49567825 (+) True LOC110486695
XM_021558475.2 mRNA downstream 20005 49571508 ~ 49577269 (+) True LOC110486696
TU1348815 other upstream 106797 49419570 ~ 49426223 (+) False G1182742
TU1348816 other upstream 110258 49419570 ~ 49422762 (+) True G1182742
TU1348751 other upstream 249517 49281659 ~ 49283503 (+) True LOC110486677
TU1348666 other upstream 266249 49263650 ~ 49266771 (+) True LOC110486678
TU1348657 other upstream 330330 49200986 ~ 49202690 (+) True LOC110486671
TU1348832 other downstream 28823 49580326 ~ 49584562 (+) True ndua4
TU1350070 other downstream 280718 49832221 ~ 49835014 (+) True G1183819
TU1350149 other downstream 331318 49882821 ~ 49883435 (+) True G1183875
TU1350772 other downstream 1434310 50985813 ~ 50986566 (+) True G1184435
TU1351847 other downstream 1832669 51384172 ~ 51392082 (+) True LOC110487554

Expression Profile