RNA id: NM_001246328.1



Basic Information


Item Value
RNA id NM_001246328.1
length 547
RNA type mRNA
GC content 0.46
exon number 4
gene id ndua4
representative False

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49580324 ~ 49584562 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GATGTCTCTGAAACGCATCTGAAAATACGCTCAGCTACTTCCTGGCAAGGCCTACATTAATCCGGTTATTTCTGTACAAATTGGGAGAAGTAAACCCTCACAATGCTGAGCACAGTTAGCCGGCAACTTAAAAGCCACCCAGCACTGGTCCCCCTTTTCATCTTCATCGGTGGTGGGACGGTTATGTCTGGAGCGTATCTCTTGCGCCTGGCAATGGGACCCCATGTCAGTTGGAATCGCAATGGCAACCCCGAGCCATGGAACAAGACGGAACCCACACAGCAGCACAAGTTTTATTCAGTGAACATGGACTACAGCAAGCTGAAGAAAGAGGGTCCTGACTTCTAAAGTCTTCTGCTGGACCAAAGACTTGAGGAAAAAAATGACTTCCCTTACACCTCTAACTTGAAACCAGTGGATGCAAAGAGGATAAACTGCACAAGTTCTGTCCCCTTTGACCTTTTAACcatctttaaaaaatgaaaaattccCTCATACCTCATGGTTGTGCAGCAATAAAGTGAAGGAGTCTTTTTCTCCTGTGTAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1348886 lncRNA upstream 11695 49568363 ~ 49568629 (+) True G1182809
TU1348872 lncRNA upstream 71414 49508693 ~ 49508910 (+) True G1182795
TU1348861 lncRNA upstream 111515 49467765 ~ 49468809 (+) True G1182784
TU1348847 lncRNA upstream 113243 49466691 ~ 49467081 (+) True G1182773
TU1348846 lncRNA upstream 114115 49465715 ~ 49466209 (+) True G1182772
TU1349973 lncRNA downstream 130573 49715126 ~ 49715459 (+) True G1183727
TU1349975 lncRNA downstream 147793 49732346 ~ 49732859 (+) True G1183729
TU1349976 lncRNA downstream 148826 49733379 ~ 49733590 (+) True G1183730
TU1349983 lncRNA downstream 151711 49736264 ~ 49736493 (+) True G1183737
TU1349986 lncRNA downstream 152834 49737387 ~ 49737651 (+) True G1183740
XM_021558475.2 mRNA upstream 3055 49571508 ~ 49577269 (+) True LOC110486696
XM_036941403.1 mRNA upstream 12499 49558788 ~ 49567825 (+) False LOC110486695
XM_021558473.2 mRNA upstream 12499 49558789 ~ 49567825 (+) False LOC110486695
XM_021558474.2 mRNA upstream 12499 49564193 ~ 49567825 (+) True LOC110486695
XM_021558469.2 mRNA upstream 23147 49551722 ~ 49557177 (+) True LOC110486691
XM_021558476.2 mRNA downstream 22926 49607479 ~ 49713614 (+) True LOC110486697
XM_036939763.1 mRNA downstream 214834 49799387 ~ 49799839 (+) True LOC118938084
XR_005035581.1 mRNA downstream 484339 50068892 ~ 50072063 (+) False LOC110486702
LOC110486703 mRNA downstream 489052 50073605 ~ 50076256 (+) False LOC110486703
NM_001124717.2 mRNA downstream 494728 50079281 ~ 50090656 (+) False LOC100136769
TU1348815 other upstream 154101 49419570 ~ 49426223 (+) False G1182742
TU1348816 other upstream 157562 49419570 ~ 49422762 (+) True G1182742
TU1348751 other upstream 296821 49281659 ~ 49283503 (+) True LOC110486677
TU1348666 other upstream 313553 49263650 ~ 49266771 (+) True LOC110486678
TU1348657 other upstream 377634 49200986 ~ 49202690 (+) True LOC110486671
TU1350070 other downstream 247668 49832221 ~ 49835014 (+) True G1183819
TU1350149 other downstream 298268 49882821 ~ 49883435 (+) True G1183875
TU1350772 other downstream 1401260 50985813 ~ 50986566 (+) True G1184435
TU1351847 other downstream 1799619 51384172 ~ 51392082 (+) True LOC110487554
TU1351876 other downstream 1861354 51445907 ~ 51446557 (+) True G1185436

Expression Profile