RNA id: XM_021558476.2


Basic Information

Item Value
RNA id XM_021558476.2
length 2396
RNA type mRNA
GC content 0.51
exon number 11
gene id LOC110486697
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49607479 ~ 49713614 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAATAACAAAGCATGGCAATGTTTTGGTATGGGCGTGCATACTTTCGTCACAGGCATAACCCGGATGTAGAGTGCCAgtgctgacaacaaaaaaatcctaTCCTGTCGTGGAACAGACTGAAAAAAGCCGGACAGGAGGCCCAGGCAAACAGAGGGACACAGCCagagacgcagacagacagacttacagATAGAGGACTGCtcccagactgacagacagagggcCCAGCTGGCCCAGCCATGGCATCAGCCAGGAGCACAGATGTTTGAGGGACTTTGATCTGGGGTGTTGCTGTGGATTACCTGGACGTTCCCCAGACGTTATCCTTGGCTGGACCTTGGTGCTGTGTGTGGTGGTCTGGTGGAATACTTAGCCCATTCAGTGGTGTTGTTGGGCTCAGCCACCCCTCCActctgccttcctcctggctggTGCTCAGGCTCCACTCAGGCCCCCCCTGTCTCAACGCTGGCGATGTCAAGAGTCCCGAGTCCCCCTCCCCCCGCGGACATGTCCAGCGGCCCTGTGGCTGAGAGCTGGTGTTACACTCAGATCAAAGTGGTGAAGTTCTCTTACATGTGGACCATCAACAACTTCAGCTTCTGTCGTGAGGAGATGGGCGAGGTCATcaagagctccaccttctcttcGGGAGCCAATGACAAGCTTAAATGGTGTTTGCGTGTAAACCCTAAAGGCCTGGACGAGGAGAGTAAAGACTACCTGTCCCTCTACCTGCTCCTGGTCAGCTGTCCCAAGAGCGAGGTGCGTGCCAAGTTCAAGTTCTCCATCCTCAATGCCAAGGGAGAGGAGACGAAGGCTATGGAGAGCCAGAGGGCATACCGGTTTGTCCAGGGGAAGGACTGGGGCTTTAAGAAGTTCATCAGGAGAGACTTCCTGCTGGACGAGGCCAATGGGCTGCTGCCTGACGACAAGCTCACTCTCTTCTGTGAGGTGAGTGTGGTGCAGGACTCTGTGAACATCTCAGGTCAGAACACTATGAACATGGTGAAGGTGCCAGACTGCAGGCTGGCCGATGAGCTGGGAGGGCTTTGGGAACACTCCCGCTTCACTGACTGCTCCCTGTGTGTGGCGGGACAGGAGTTCCAGGCACACAAAGCCATCCTGGCAGcCCGATCGCCAGTGTTCAGTGCCATGTTTGAGcatgagatggaggagagtaAAAAGaaCCGTGTGGAGATTAACGATGTGGAGCCCGAGGTGTTCAAGGAGATGATGTGCTTCATCTACACGGGCAAAGCCCCCAACCTGGACAAGATGGCTGACGACCTGCTGGCTGCGGCTGACAAGTATGCTCTGGAGAGGCTGAAGGTGATGTGTGAGGATGCTCTGTGCACCAGTCTGTCTGTGGAGAACACTGCAGAGATCCTCATCCTGGCAGACCTGCACAGTGCAGACCAACTCAAAACACAGGCTGTGGACTTCATCAACTACCATGCTGCTGAGGTGATGGAGACGTCTGGCTGGAAGTCCATGGTGGCATCCCACCCCCACCTGGTGGCTGAGGCCTATCGCTCCCTGGCCTCGGCCCAGTGCCCCTTCCTGGGACCCCCACGCAAACGCCTCAAACAGTCCTAGTGTCCCTGGATCCCTTGCCCAGCTCTGCTCTACCCTGGGACCACAGAGGggtctgctctcctcctcctccaggcccCCTCCAGAACCTAGAGATGCCCAGATTGATACCAgagctcctccctccctcctccctcagctGAAAATACAGGGGGGATGATGTGGATTTGGTACAAAGACGATGAAAAAAAGGGATGATCCACCCTGATAACTGAATATAGACAGTGACTACCTTGTCTTACCCTGTACACCTGTAGAGAACAGAGTGTTTGGGTATAGGAGGGAGGTAGAAGTtgtaaatgcattttttttttactttacttttttttaaagtcctCCTTGTAGCATTGTGTAAAAGCCCAAGCTTTATGTATGAAatcagaaaaacaaacaaaaaagacaATAACCAAAAATGGACAAAGAGAAAGTTTTGGGTGATGAAGTGCCACCATGTCCCAGTCATCTTCCCTGAGCAGAGAAAAACCCTGTAGTTCATGTTTGACATCCATCTTgtacaaaataacattttaagcATTTTTCTCACCGAAGGGCAAAAAGAAAGGTGATTTTTTTGCAAGAAACAAGATGGAGATGAACACGTTTTAATGTTCAACATGTCCAACCTTTTTCTCTTAGAAAAACGACATACAAAAACATATTATATCAACTGTTTTTACTCTGACCCTTTTCAGGACTACTTTCCTCATTGGTGGAATTAGAAGGCACTCCTGCGTCACTGTCAAAACGCTAACAAATGTTTAGTCTCAACACAAAATACAGCTATTTTGGATTGTAAAA

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0016607 nuclear speck cellular_component
GO:0031463 Cul3-RING ubiquitin ligase complex cellular_component

KEGG:

id description
K10523 SPOP; speckle-type POZ protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1348886 lncRNA upstream 38850 49568363 ~ 49568629 (+) True G1182809
TU1348872 lncRNA upstream 98569 49508693 ~ 49508910 (+) True G1182795
TU1348861 lncRNA upstream 138670 49467765 ~ 49468809 (+) True G1182784
TU1348847 lncRNA upstream 140398 49466691 ~ 49467081 (+) True G1182773
TU1348846 lncRNA upstream 141270 49465715 ~ 49466209 (+) True G1182772
TU1349973 lncRNA downstream 1512 49715126 ~ 49715459 (+) True G1183727
TU1349975 lncRNA downstream 18732 49732346 ~ 49732859 (+) True G1183729
TU1349976 lncRNA downstream 19765 49733379 ~ 49733590 (+) True G1183730
TU1349983 lncRNA downstream 22650 49736264 ~ 49736493 (+) True G1183737
TU1349986 lncRNA downstream 23773 49737387 ~ 49737651 (+) True G1183740
NM_001246328.1 mRNA upstream 22926 49580324 ~ 49584553 (+) False ndua4
XM_021558475.2 mRNA upstream 30210 49571508 ~ 49577269 (+) True LOC110486696
XM_036941403.1 mRNA upstream 39654 49558788 ~ 49567825 (+) False LOC110486695
XM_021558473.2 mRNA upstream 39654 49558789 ~ 49567825 (+) False LOC110486695
XM_021558474.2 mRNA upstream 39654 49564193 ~ 49567825 (+) True LOC110486695
XM_036939763.1 mRNA downstream 85773 49799387 ~ 49799839 (+) True LOC118938084
XR_005035581.1 mRNA downstream 355278 50068892 ~ 50072063 (+) False LOC110486702
LOC110486703 mRNA downstream 359991 50073605 ~ 50076256 (+) False LOC110486703
NM_001124717.2 mRNA downstream 365667 50079281 ~ 50090656 (+) False LOC100136769
XM_021558485.2 mRNA downstream 377723 50091337 ~ 50113963 (+) False LOC110486704
TU1348832 other upstream 22917 49580326 ~ 49584562 (+) True ndua4
TU1348815 other upstream 181256 49419570 ~ 49426223 (+) False G1182742
TU1348816 other upstream 184717 49419570 ~ 49422762 (+) True G1182742
TU1348751 other upstream 323976 49281659 ~ 49283503 (+) True LOC110486677
TU1348666 other upstream 340708 49263650 ~ 49266771 (+) True LOC110486678
TU1350070 other downstream 118607 49832221 ~ 49835014 (+) True G1183819
TU1350149 other downstream 169207 49882821 ~ 49883435 (+) True G1183875
TU1350772 other downstream 1272199 50985813 ~ 50986566 (+) True G1184435
TU1351847 other downstream 1670558 51384172 ~ 51392082 (+) True LOC110487554
TU1351876 other downstream 1732293 51445907 ~ 51446557 (+) True G1185436

Expression Profile