RNA id: XR_005035580.1


Basic Information

Item Value
RNA id XR_005035580.1
length 5393
RNA type mRNA
GC content 0.48
exon number 6
gene id si:ch211-214j24.15
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 50059034 ~ 50067398 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGTTATAAACACAACATTATTACTGCCTATTACTGCCCACCTTCAGactcataaagacatcacaagTCATCAAGGCAAGTGTCCACTCCCTTCAGAGTAAAAGCTACACCCCAGTCTTTCAGGAACTTGTTGTAAGCCAGAAGTAAAAGGACTGTTATTGGGGATGATGACTAAAATTAGTTGGATTGGAACAATTTTGGGGAGAAACTAAGCACAGATAAAGGTTAAGATCAAGAGAAATGGCAACCAGAGATTCATCAACATGTGACCTGAAAGTTATCCTTCTTGGCGGCAGAAACTCTGGGAAGAGCGAAGTGGGAAATGTGCTGCTGGACAGGGAGGAGTTTGTCATCAAGGAGCGGACTACGTGCTCTAGGAGGGTGGGAGAGGTGGCAGGTGGGTGGGTTACTGTGGTGGACACACCTGGCTGGTGGTGTGACTTCAAGGTGCAGGACACGCCTCAGCTGGTGAAAAGGGAGATAGTGCGCAGTGTCTCTCTGTGCACCCCAGGACCCCATATTTTCCTTATCGTCATTAAGACACACTCAGTGTTCTGTGAGAAGCGTCGCAGGGCTGTAGAGGAGCACCTGGCCCTCCTCAGTGAGAGAGTATGGAGTCACTGTATGGTCGTCTTCACCTGCAGGGACTGGCCTGGACACATGCACATGGAGCAGCAAGTCAAAAGAGGAGGCACGGCCCCACTGTGGCTGGTGGAGAAATGTAGTCATAGGTATCACTGCCTCAACTTGAAGAGTGGACCAGGTGGAAATCAGGTCACAGAGCTGTTCAGGAAGATGCAGAGACTGGTGACAGAAAATAGTGACAGCTATTTTAAAATGGAGGGACTGCTTTTACAAGAGGTGGAGGAAAAGAAGAGGATAGTGGAGCAAAAGGCTCAGCAGAGATTGATGAAGATGCAGAAACAGAGATCTCTGCTCAATGGGGAGTCATGTCATGTCTCCGATATCAGAGTCGTGCTGCTTGGAGCTCGGGGCTCAGGGAAGAGTTCAGCAGGAAACACCATCCTGGGTCAAGGAGGAAGCTTTCAGGTCAGAAGGAGAACAGCGCAATGCATGGTGGGAGCAGGGGATGTTGCCGGGAGACAAGTCACTGTGGTGGACACTCCAGGCTGGTGGATGAATTACTTCTCTCAGGATAGTCCTGTTTTTGACAGACAGgagatagtgtgtagtgtatctcTTTGCTCCCCTGGTCCACATGCCCTCCTGCTGATGGTACGTGTGGACCGGTCCTTCACAGAGACCTACAGGAGAGCTGTGCAGGAGCACCTAGAGCTCATCACAGACACAGTCTGGGCTCACATCATCGTCCTGTTCAACTTTGGGGACTGGCTGGGAGACACAACCATCGAGCAGCACATTGAGAGTGAGGGGGAGGCCCTCCAGTGGCTTGTGGAGAAGTGTGGCAACAGGTATCATGTCCTCAACAATAGAAGCAACTCAGGATTTCAGGTTACGGAACTGATGAGAAAGATTGAGGAACTGATGTCATGCAACCGCAGTTGTTACTGTAAGATTGAGGGTGGGATTCTGCAGGagttggaggagaagaggagggaagaacaGAAAAGAGCAGGGGAGAGACTGACGAGGAGGCAGAAACAAAGAGAGACTGCCAGATCTCTATTAGGGGAGCTCTACTGTCCCTCAGAGCTGAGAATAATGCTGCTGAGTGGCCGCAACACAGGCAGGAGCTCTGCTGGAAACACCATCTTGGGCAGAGAGCACTTTAAAGTAGGGTGCCATGCTACTGACTGTGTGGAAGGACAAGGAAAGGTCAGGGGAAAGACTGTGACAGTTTTGGACCCACCAGGCTGGCTGTCAGTGGGTCCTGGCTCCCTGATGTCTCCCTCAGCCTCTGGGGTAACTGTGGTCCTGGTGGTTGTGAATGTGAGCTCCTCCTTCAGCCACACTGTCTGGAGAACAGCAGAAAAACACCTGGAGGCGCTCGGAGAGAAAGTATGGAATAGAACCATGGTCCTATTCACCTTTGGGGACTGGCTGGGGGACACAACCATCGAGCAGCGCATTGAGAGTGAGGGAGAGCCCCTCCAGAGGCTTGTCGAGAAGTGTGGCAACAGATACCACGTGTTGGACAGTAAGAACCAGGGGACTGGTGCACAGGTCACTGACCTGCTACAGAAGATAGAGGAGatgctggtggaggagaggttggaggTTATACGGAGAAGAGAACAGGTTGGGAAGAGTCTCACAGTGATGCAGGAGCCAGAGATGGATGGAGTgatgggagagggcagagaggtcCTTGTAGCAAACCACACAGATGCTCCCATTCATGATGagctctcttGTGTTGCAGCGTGTGAGGTGGCTAGTTCAGAGGACCTTCTAACCCCAGATGACTCAGGAGCCCCAGACTTTGGTGGACAGGAGTTGGCACTACCAGAGGCCAGCGGAGGATTGTGGACTGAAGCAAATCACTCCATCCTTGATGTGGAGGGGTTTCTGTCCAGCATGGCCAGTGTGCTTCAGGGGAATCAGGAGGGGCTGATGTGGAACATGGGGGGCAGACAGACGCTATTGGTGACCCTCCCAGACTGTCTCCACACTGGATCTACTCAGAGCCATCATCTGAGATGGAATGGACAGAATGGTAGAAAACCAGTCACCCTGTTCTCTCCAGGACACCAAGCTCTCCTCCTGGTCCAGCAACCCAAAGAACCAGAAAGAATGCTGGTGAAGAACCAGGAAGACATAGTGGATATACAGTCCCTTGGACACCCCAGGCTGAGGGACAGGACCCTCAAGGAGATTGCCAGAACAGGAGGCCTGCAGGCCTTGATTGACCAATGGGGGAACAGTAATTTGGAGGAGCTTGAATCCTTCATTGACTCCTATTTTGAAATGGTGTGGAAGAAAACCATGGGGTCTTtcatagtagaggaggaggactgTCTCACCAGCAACAGCCCACAGCTGAATGATGTTGGGAAGGATCTTGTAAATAATGGTGACCAGGAGGTGCTGTCATCCATTGACAAGAAGCTGTCTAAGCTGGACATCCTGGAAGGCATGCAGAGAGACTTGCTAGACCTCAGACAGAGTCTGGATCGCACCTGTGACATCATACAGGAACTCAGTGACAAAAGTGAAGCAACACAGAAGCCTGCTGTTCCCTCTGATGCAGGGGAGGCAGCAGTGGAGGAAAGTTGCTAGAGAAGAGATGTTCAACAATAACATAAATTATATAAATGAAGTTAtagattgtttaaaaaaaaatctaaatatgccCTAACATCATTGTTCAGGTAACAACTAATTAACAGTATTGATTTATTGATGGAGTTAATGCTAATGGCGAGGCAGTATATTAACTTCATGATGTCATGTGTTTCCACAAGGGGGAGCCCTCTGATAAGCAATTGTGGGGGGTTGGTCTCCTGCATAGGTTACTGTATCTATTCACTACATGAAATATTTCACTCCATTATTATGCAAGATTACCAGTCATTTTAAATCAGTCATTGTTGATCATTTCCTAGATGATTATTTTATTTATCTTATGAGGCTTGTATAAAGACATATCAGGGTCCAGATGACAGCACGTGTCATGCCATAAAAGTAACATATTATATATCATGAAACATATCATAGGGGCAAGTCTTTTTTTGTGTTTGCTCATGAGACTTGTTTGAGTCAATGTAAAAAGAATTGACAGCAACAAAGACTGAGAGCCGTGACCCTCTTAGGTGGTGGGTAAGCTGAGGATGAAAAACTGTCTGACTGTGCTGTGGTGACTGTCTGCAGGTGCtgcagccccagcctcagcccactGGCTGATGACTCATCTCTCTACAGCAGAAGCAGAACATGTACAGTAGAACTGGGCTGATTCACAACTGGAAGGGAAATACTGTAGGTCTTCACATTGGGTAGTTACTGTTCATAAATAAGGGCATGGAGTTTTTCCTCTTCAGGTCACATGGTTAGAAAACACTTCAGGTGCTATTCATAATTGCTCTCCATCTTGCAACATGCTgaggtgtgtgagagggagagagaaagagagtgagagagaaagggggaggaatagggagagagagagagagagagagagagagatgcagaaacaGAGCATGTCCTAAATTGCCTTCAATCTCCAGTTAATGAAAAACAGGAAGTTGGTTCAGGCAGACCAGACATTGTGTTAGCTGAGAATACCATAAAGCTGGAAGGCTACATTTCTAAACCCTTTCAGAATTTGCCCAAGAGCCAGTGAGATgagtcacacagacacatacagcgGCTAATAGATTTCTGGCTGGGTAAGTAAACACTTTGCAAAGCCTAGTGCAGTCAAGGTCAATCTCTATCTACTTTTAAAGCCAACATGTAAGAACCTCAAAGTAAAGTGTTTTTATAGGGCAATTTTTATTGAAATCCGGAAATGGGAAGATGTTTTTGCCGAGCTATTATTTTTTTGACCCTCTATTTTTTGTTGACCCTCTGAACGAGGTTACAATGTTGACAGATTGATGAAAAAAtagatgttttattgtcacatacaccagataggcaGTACTGTAAAACATATTGATACTCAGACATTGTAGAATTGCTGAAACTTAGGCCAAAAACCAGCCAGACAATTGTACTTTCCTCTTAATAGTGTTTTTTGTCAACCTCTAGTTTAACTCTCTACATCCAATATTCACCTTTGTTAATAGCAACACTGGGCTATTATAGAGTAAAGAAATCCCACAGCCACAAAGTGAGGCTCTTGGGGCATAAATGCACTTGTTTTATTTTTGACACATAGCCTCGTCATCCAGTCTCTTCCCTGGTCTGGTGTGTTTTTCCCTACTCAGACTAGAAGTTCCATTCTGGGAGCATGCATTATGCAGAGATCCCCAGAGTGcttggagagagtgaggagggtcCCACCTGGTGTGTTCAGAGTGCATCTCCCCACCGCCCACCTTACTGGCCAATGGGAGAGAGGGTTGTGACTGCCATCCCAGCATAGCCTGGACTGGAGAGAAAGGAGACCTCCAACAGCCTAACGCAGCAGGCATAGAAAGACGTCTGAGCGAAGTTCCCACTTCCGATGTTCAGGGGAAACTGAAGTTAGGTTGAAAATACTCCATCCCTGTAAAGCAGATGTTAGTGTGTTCTGGTGACGCAGCATAGGATAGTCCTACAGTCACTagtcttcttctctctatcccccccccccccaatcttaCAGCTCCAGTTGTGAGTCTCAACCCTCCCCACTCATTAAAAAAGATTTGCAGCTTGGACGGAAGCTGGAGAGAAATGGATCTCTCAGCGTGATGGTGGTGCAGTGGCCGTTTGGCCCAGGAGACAGTCCTGAGCCCACATTCATCTCCATTAGTAGGACAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1351051 lncRNA downstream 2799 50053593 ~ 50056236 (-) True G1184673
TU1351032 lncRNA downstream 15917 50042788 ~ 50043118 (-) True G1184656
TU1351016 lncRNA downstream 44352 50014251 ~ 50014683 (-) True G1184640
TU1351015 lncRNA downstream 46904 50010702 ~ 50012131 (-) True G1184639
TU1350973 lncRNA downstream 132591 49926199 ~ 49926444 (-) True G1184598
TU1351045 lncRNA upstream 11745 50079143 ~ 50084716 (-) True G1184668
TU1351047 lncRNA upstream 20683 50088081 ~ 50153315 (-) True G1184670
TU1351041 lncRNA upstream 23053 50090451 ~ 50138282 (-) True G1184665
TU1351048 lncRNA upstream 24818 50092216 ~ 50095111 (-) True G1184671
TU1351046 lncRNA upstream 25162 50092560 ~ 50093070 (-) True G1184669
XM_021558479.2 mRNA downstream 18702 49970722 ~ 50040333 (-) True LOC110486699
XR_005035579.1 mRNA downstream 205364 49831067 ~ 49853671 (-) False LOC110486698
XM_036941404.1 mRNA downstream 205364 49835078 ~ 49853671 (-) False LOC110486698
XR_005035578.1 mRNA downstream 517286 49537569 ~ 49541749 (-) False LOC118938314
XM_021558470.2 mRNA downstream 525445 49530771 ~ 49533590 (-) True LOC110486692
XM_021558499.2 mRNA upstream 55792 50123190 ~ 50127201 (-) True LOC110486710
XM_021558491.2 mRNA upstream 60157 50127555 ~ 50130302 (-) True LOC110486707
XM_021558504.2 mRNA upstream 563607 50631005 ~ 50633690 (-) True LOC110486713
XM_021558507.2 mRNA upstream 580036 50647434 ~ 50653284 (-) False LOC110486716
XM_021558508.2 mRNA upstream 580036 50647434 ~ 50653284 (-) True LOC110486716
TU1350091 other downstream 222703 49835663 ~ 49836332 (-) True LOC110486698
TU1349952 other downstream 370579 49685338 ~ 49688456 (-) True G1183706
TU1349444 other downstream 514759 49537199 ~ 49544276 (-) True LOC118938314
TU1349433 other downstream 555025 49486926 ~ 49504010 (-) False LOC110486687
TU1351387 other upstream 559249 50626647 ~ 50628539 (-) True G1184986
TU1351422 other upstream 689240 50756638 ~ 50758044 (-) False LOC110485208
TU1351447 other upstream 712867 50780265 ~ 50781858 (-) True G1185046
TU1352616 other upstream 1254402 51321800 ~ 51323931 (-) True G1186080
TU1352611 other upstream 1284911 51352309 ~ 51373954 (-) True G1186075

Expression Profile