RNA id: XR_005035581.1


Basic Information

Item Value
RNA id XR_005035581.1
length 1687
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC110486702
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 50068892 ~ 50125626 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTGCTCAAACGCTTCAGCAAGCTAGTTAGCCTTTTTAGCATCTGTGTTACACAATCGTGTCTTTAGGTCAAACCTGAATCAGCTTATCGAGAAGAAGGAACGAGCAAGCTAGGTAGTTTCTTCAACAGCCATGGGTGTGCAAGTCAAAGTCGAATACTGCGGTGGATGAGGGTACGAGCCCCGCTATCAGGAGCTCGCGCGGGTTGTCACTGCGGAATTCACTGAAGCGGAAGTGTCGGGCTTCGTAGGAAGGCAAGGCAGTTTTGAGATTGAGATCAATGGGCAAGTAGTTTTCTCCAAGCTCGAAACAAGCGGCTTCCCATATGAAGACGACATCATGGACGCTATACAGAAAGCCCATGATGGCAAGCCAGTGGAGAAGATCACCAAGAGCCGCCCGCCTTGTGTCATCCTGTagatctcctctccctctattctccaaCCCTGCCATCTCCTGACAGCAGCATGCTGAAGACAGGACAGTGTGCATCCATCACTGCCACTGTCATTACTCACTCAGCCTTTGCACTAACCGGGCATGAGGGTGACACGCAACTCTCTGTTGAAACTACACTAGCAGAGTTGGACTAAGACCACTGTCTTTGATTTAGAGTACAACCTGTCGtaaggttttgttgtgccttctctctcccctctctctctgctcccattGAGGTGTTCCAGGACTTATATGATTACTGTAGCCCAAAGCTGAAAGTTTATAGTATGATGACCCCAGTCCTGGCAGCTCCTATGTTATGGGATCAGAGAAATGGAGGAGACTGTAAGATCGAGGGGCAGACGGGTTGGGGGGAGCACCCTATTTTATTCCGAAAGCCTCATTGCCTGGCAGACAGTTACTGCCTGATTGTTCTAATTCCTCTCAAATAATACAGCACCATCATTGGCCAGACATAAACAAAGTTTTGATGAACGTAAAAGATAAATGTTATTGAGTACCAAAAGCAAGAAGGGAAGGAGCTCAATTATTTTCAGCCCTCAGTCATCTAGCTCTAAGCATCATAAGCCCTGTTTCACAACTTGTATCCTGTACCCTACTATGATGATGAACGTGCTGCTTGAACCTGTCAATGCAATGTTTGTCAATGTATTTAATAAGATGTGTTCTAAAGTGGAGACACTTTAATCAAGGTTGAAGCTTAGACttttaatgtttttgttttgttcagtTCTGTCACTACAACTTTTATGTATCTTTAAAACTAGTGTATCAATGTCGGAATTTGGATGTAATCAGGGTTTTTTTCTTCAGTTATGTCCATCTATAGCTAGTCTTTAACAGTGAACTATATCTCTGTTTTGAACTGTTCTCTTTAGCCGAAACATGAGAAACACCGTAGTAGCCAAACCTCTTGTGAATTTGCAATTGTATACTGCCACTGAATCATAGATAATGCATTTTCATTGACTCAGTGGCTTTTATATATGATCAGCTGAACTGTTAGTAGAGCTGACCTTGCAGGTAGATAAATCCTAAGTTGTTTTGAAAGCCATCTCTCACTGGTCTGTCTATCACTAACGACACCTTATCAGCCCCTGTTTATGCGCAGTTTATTGAATATCATCtctgaataaaaaaaaattatgttgCCCAGGGATGTCAAGTATGATACTCATTAGGAGAACTTCTATCACAAAATAAAGTTATGGATTATTTAACTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1350275 lncRNA upstream 4533 50063540 ~ 50064359 (+) True G1183980
TU1350268 lncRNA upstream 25545 50043138 ~ 50043347 (+) True G1183973
TU1350267 lncRNA upstream 25890 50042720 ~ 50043002 (+) True G1183972
TU1350165 lncRNA upstream 94358 49970762 ~ 49974534 (+) False G1183890
TU1350166 lncRNA upstream 94358 49970762 ~ 49974534 (+) True G1183890
TU1350259 lncRNA downstream 1850 50073913 ~ 50075930 (+) True LOC110486703
TU1350253 lncRNA downstream 17115 50089178 ~ 50090662 (+) True LOC100136769
TU1350344 lncRNA downstream 146989 50219052 ~ 50219903 (+) False G1184046
TU1350343 lncRNA downstream 147624 50219687 ~ 50220138 (+) True G1184046
TU1350380 lncRNA downstream 194960 50267023 ~ 50267498 (+) True G1184078
XM_036939763.1 mRNA upstream 269053 49799387 ~ 49799839 (+) True LOC118938084
XM_021558476.2 mRNA upstream 355278 49607479 ~ 49713614 (+) True LOC110486697
NM_001246328.1 mRNA upstream 484339 49580324 ~ 49584553 (+) False ndua4
XM_021558475.2 mRNA upstream 491623 49571508 ~ 49577269 (+) True LOC110486696
XM_021558473.2 mRNA upstream 501067 49558789 ~ 49567825 (+) False LOC110486695
LOC110486703 mRNA downstream 1542 50073605 ~ 50076256 (+) False LOC110486703
NM_001124717.2 mRNA downstream 7218 50079281 ~ 50090656 (+) False LOC100136769
XM_021558485.2 mRNA downstream 19274 50091337 ~ 50113963 (+) False LOC110486704
XM_021558486.2 mRNA downstream 19274 50091337 ~ 50113963 (+) False LOC110486704
XM_021558484.2 mRNA downstream 19539 50091602 ~ 50113963 (+) False LOC110486704
TU1350149 other upstream 185457 49882821 ~ 49883435 (+) True G1183875
TU1350070 other upstream 233878 49832221 ~ 49835014 (+) True G1183819
TU1348832 other upstream 484330 49580326 ~ 49584562 (+) True ndua4
TU1348815 other upstream 642669 49419570 ~ 49426223 (+) False G1182742
TU1348816 other upstream 646130 49419570 ~ 49422762 (+) True G1182742
TU1350772 other downstream 913750 50985813 ~ 50986566 (+) True G1184435
TU1351847 other downstream 1312109 51384172 ~ 51392082 (+) True LOC110487554
TU1351876 other downstream 1373844 51445907 ~ 51446557 (+) True G1185436
TU1351980 other downstream 1555619 51627682 ~ 51628676 (+) True G1185521
TU1351986 other downstream 1579550 51651613 ~ 51653770 (+) True G1185527

Expression Profile