RNA id: NM_001124717.2


Basic Information

Item Value
RNA id NM_001124717.2
length 3825
RNA type mRNA
GC content 0.50
exon number 20
gene id LOC100136769
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 50079281 ~ 50090662 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTCTATCATTGGGTACGTTTACGTTAGCATCGTGGCGATCAACCTATTTCTACTGCCACAGACTAGGCTGGATCACCTTGGTGCAGGGTATGCACAAACGTTGCTGAAAGTTTAAGGACAGACGAAGCAAGCACTGACACACTCCAATGGAGAACGACCTGTCTTTTGGAGAGGATGTCATGTCCTATGAGGAGGAGAGTGACTCTGCTTTCCCATCTCCGATCAGACCgacCCCACCGGGCCACAGTGGCAACTATGACCTGGAGCAGAGCAGGCAGGAAGAGGACAGCAACCAGGCCATCCAGAGCATCGTCGTTCACACCGACCCAGAGGCCTATCTGAACCTGAACACCAACGCCAACACCAGAGGGGATGCTCAGgccTATGTAGAGCTGAATGAGCTCATGGGCAACAGCTGGCAGGAGACTGGCCGCTGGGTGGGCTATGAGGAGAATTTTAACCCAGCAACGGGCAAGTGGGGCCCCTCCCACGTCTCCTACCTCACCTTCAAGAGTCTGATCCAGCTTCGCAAGATCATGAGCACAGgTGCGATCATTCTGGACCTGCAAGCCAGCAGTCTGTCTGCTGTGGCTGAGAAGGTGGTGGATGAATTGCGGAGCAAGGGTGAGATCCGTGCCGCTGATAGAGATGGCCTGCTGAGGGCTCTACTGCAGAGACGCAGTCAGTCTGAGGGAGCTGTAGCTCAACCCCTGGGAGGAGACATCGAGATGCAGACCTTCTCTGTCACCAAGCAGAGAGATACAACTGATAGTGTGGAAGCCTCCATTGTCCTCTCAGgGGTGATGGACTCCCTGGAGAAGCCTGCCGTGGCCTTCGTCAGGCTGGGGGACTCTGTGGTGATAGAGGGGGCCCTGGAGGCCCCTGTGCCGGTGCGCTTCGTCTTTGTGCTGGTGGGCCCCAGCCAGGGAGGAGTGGATTACCATGAGAGTGGCCGTGCCATGGCTGCCCTTATGGCTGATTGGGTCTTTAGTCTGGAGGCTTACCTAGCCCCGACTAACAAGGAATTGACCAATGCCATCGCTGATTTTATGGACTGCAGCATCGTCATCCCGCCCACTGAGATCCAGGACGAGGGCATGCTCCAGCCAATCATTGACTTCCAGAAGAAAATGCTGAAGGACAGACTCCGCCCCTCTGACACCCGAATCATATTTGGTGGCGGGGCCAAAGCTGATGAGGCCGATGAGGAGCCAAGAGAAGACCCGCTGGCCCGGACAGGCATTCCCTTCGGCGGGATGATAAAGGACATGAAGCGGCGGTACCGCCATTACATCAGTGACTTCACAGACGCCCTCGACCCCCAGGTCCTGGCTGCTGTCATCTTCATCTACTTCGCTGCCCTGTCCCCTGCCATCACCTTCGGAGGCCTGCTGGCCGATAAGACGGAGCACATGATGGGCGTGTCTGAGCTGATGATCTCCACCTGCATCCAGGGCATCATCTTCGCCTTCATCGCAGCCCAGCCTACACTGGTCATTGGCTTCTCTGGGCCACTGCTGGTGTTTGAGGAGGCCTTCTTTGCGTTCTGCAAGTCCCAGGAGATTGAGTACATTGTGGGCCGTATCTGGGTAGGCCTGTGGCTGGTGATCATCGTGGTGGTTATCGTGGCTGTGGAGGGCAGCTTCCTGGTCAAATTCATCTCCCGCTTCACGCAGGAGATCTTCTCCATCCTCATCTCCCTCATCTTCATCTACGAGACCTTCAGCAAGCTCGGCAAGATCTTCAAAGCTCACCCTCTGGTTCTGAATTATGAGCACTTGAACGACAGCCTGGACAACCCTTTCCACCCGGTGGTCAAGGAGCACATAGAGTATCATGAGGATGGCAACAAGACAGTGCACGAGGTCATACATGAGAGGGCCTACCCCAACACCGCCCTGCTTTCCATGTGTCTTATGTTCGGGTGTTTCTTCATCGCATACTTCCTCCGTCAGTTCAAAAATGGCCACTTCCTCCCTGGACCGATTCGTCGGATGATTGGAGATTTTGGTGTTCCCATTGCCATTTTCTTCATGATCGCTGTGGATATCACCATTGAGGATGCCTACACTCAGAAACTTGTGGTGCCCAAGGGTCTTATGGTGTCCAACCCCAATGCCAGAGGCTGGTTCATCAACCCCCTGGGAGAGAAGAAGCCTTTCCCTGCCTGGATGATGGGGGCGTGTTGCGTGCCAGCCCTGCTGGTCTTCATCCTCATCTTCCTCGAGTCCCAGATCACTACGCTGATTGTGAGCAAACCAGAGAGGAAGATGGTGAAGGGCTCTGGTTTCCATCTGGACCTGCTCATCCTGGTCACCATGGGTGGCATCGCCTCCCTGTTTGGGGTGCCCTGGCTGAGTGCCGCCACCGTGCGTTCTGTCACCCATGCCAACGCCCTCACTGTCATGAGCAAGGGACCCAAGCCTGAGATCGAGAAGGTGCTGGAGCAAAGGATCAGCGGCATGCTTGTGGCCGCCATGGTCGGTGTGTCTATTCTCTTGGAGCCTATCCTGAAGATGATTCCCATGACGGCTCTGTTTGGAATCTTCCTCTACATGGGTATAACCTCACTCAGTGGGATCCAGATGTGGGACCGAATGCTTCTGCTTATTGTACCCAGGAAATACTATCCTGCTGACGCCTACGCACAAAGGGTAACTACTATGAAGATGCACTTGTTCACCCTGATCCAGATGGTGTGTTTAGGAGCTCTCTGGATGGTGAAGATGAGTGCCTTCTCCCTGGCTCTGCCCTTTGTCCTCATCCTCACCATCCCCCTGCGCATGGCCATCACTGGAACACTCTTCACTGACAAGGAAATGAAATGTCTGGATGCCTCTGACGGCAAGGTGAAGTTCGAAGAGGAGCCAGGAGAGGATATGTACGAGTCCCCGTTGCCATGAACACCTGGACACGACCTTTCACTTCTCAACTCGCTGCGAGGATCCAGTGAACTCAAACAATGCTTTAATAGAGTCTAACACATTTATTAGTATGTGCCATCAGAAATATTCTTTAGGAAAATGTATTTTTAGCCAACTGTCCTTAAACATCATTGCAATTGGGTATGTTTGTGTGCCAAGATAAAATGAAGGTCTCGGGTAAGCATTCAAACCTTTTTAATGACAGGTTGCCTAATATTCTACACTATTAATATGACAATTAACATTTGTCTCTCAAATACCCAAATAATGCCAAAAATATAATCCCGTCCGTATTAGGCAGATAGATAAATGCAATATtataaatcacacaaaaatgcTTTTCTATGGGACTGTTATTTTAGCCTTGGTTCTGTAGCCTATTTTATACCCTAGTTACATTACTCTCCTTTGTTACAGTTTGGTTTTATGCTTCATTGTGAGCTTATTGAATGAAAGTCTTATGTAGATCACTTTTTGTTCTTGCTGTTTTGTTTAGTTGCAAGCTAACGTGTGAGTATGGAGTTCAGATCATCTTAGTTCTATTTTGGGGTGTCCAGTGGTGTCACTCATTCAGTTCTTATACCTAAATACATATTTACTTCAGGATGTAATGCTTTCGGTATTGCAAAGGTGAGAGGGATACATATAGGAAAATGTATTAATCACTGAATGAATTGTAACAATATAATGATGATGTGGGAGAGAAATGTGTAAATATGACAAATGAATCACAGCAATAAGATTGACTATAGTAGGCCTATTGCACCATTTTTTCATTGATCGGGGACAGGTGTAAAAGGACAGCTGTATATTTGGTTTATTGTATGTTGATGTGTGTTTGAATCACTGTACAACTGCTGTTTTGATTGTCACCCAACCAATTAAAGACATTTTAAACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1350259 lncRNA upstream 3351 50073913 ~ 50075930 (+) True LOC110486703
TU1350249 lncRNA upstream 7218 50068908 ~ 50072063 (+) False LOC110486702
TU1350275 lncRNA upstream 14922 50063540 ~ 50064359 (+) True G1183980
TU1350268 lncRNA upstream 35934 50043138 ~ 50043347 (+) True G1183973
TU1350267 lncRNA upstream 36279 50042720 ~ 50043002 (+) True G1183972
TU1350344 lncRNA downstream 128396 50219052 ~ 50219903 (+) False G1184046
TU1350343 lncRNA downstream 129031 50219687 ~ 50220138 (+) True G1184046
TU1350380 lncRNA downstream 176367 50267023 ~ 50267498 (+) True G1184078
TU1350483 lncRNA downstream 327040 50417696 ~ 50418945 (+) True G1184178
TU1350606 lncRNA downstream 510293 50600949 ~ 50601164 (+) True G1184296
LOC110486703 mRNA upstream 3025 50073605 ~ 50076256 (+) False LOC110486703
XR_005035581.1 mRNA upstream 7218 50068892 ~ 50072063 (+) False LOC110486702
XM_036939763.1 mRNA upstream 279442 49799387 ~ 49799839 (+) True LOC118938084
XM_021558476.2 mRNA upstream 365667 49607479 ~ 49713614 (+) True LOC110486697
NM_001246328.1 mRNA upstream 494728 49580324 ~ 49584553 (+) False ndua4
XM_021558485.2 mRNA downstream 681 50091337 ~ 50113963 (+) False LOC110486704
XM_021558486.2 mRNA downstream 681 50091337 ~ 50113963 (+) False LOC110486704
XM_021558484.2 mRNA downstream 946 50091602 ~ 50113963 (+) False LOC110486704
XM_021558482.2 mRNA downstream 1214 50091870 ~ 50113963 (+) False LOC110486704
XM_021558483.2 mRNA downstream 1215 50091871 ~ 50113963 (+) True LOC110486704
TU1350149 other upstream 195846 49882821 ~ 49883435 (+) True G1183875
TU1350070 other upstream 244267 49832221 ~ 49835014 (+) True G1183819
TU1348832 other upstream 494719 49580326 ~ 49584562 (+) True ndua4
TU1348815 other upstream 653058 49419570 ~ 49426223 (+) False G1182742
TU1350772 other downstream 895157 50985813 ~ 50986566 (+) True G1184435
TU1351847 other downstream 1293516 51384172 ~ 51392082 (+) True LOC110487554
TU1351876 other downstream 1355251 51445907 ~ 51446557 (+) True G1185436
TU1351980 other downstream 1537026 51627682 ~ 51628676 (+) True G1185521
TU1351986 other downstream 1560957 51651613 ~ 51653770 (+) True G1185527

Expression Profile