RNA id: XM_021558483.2


Basic Information

Item Value
RNA id XM_021558483.2
length 4829
RNA type mRNA
GC content 0.46
exon number 22
gene id LOC110486704
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 50091337 ~ 50113963 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACAGAACCAGCCGCCTCTCTGGTTAGCCATCATGGATCTCAGTTTAATATCTCACCGTGTGGGCTCGCCCTCTATCTCGCTTGACAACCATCATTGCCAACCTGCGAAAACCAGTCTTTGGTACTGTTATAGTTGCCTATGATCCTGGTGCGGGGCAGTCTTCAAGACTCATCCTCGCCACACGGCTACAAAACCTGCTTTACCCCGTGTTCAACAACAGCTGAAAGAAAAGTCGGGGGGGATAGAACCGTTTCACGGTTAAAGAAAGTACAGATGAATGGAGAAATGGACGCGTCCACTAAAGACCAAGTGTGGACGCAGGACGACCTTCTGAATCTGCTAGAGGCCATGAAAGTCAATCTTCCCCAGAAGGACCTGGCCAAGTACAAGACGTCGGAGTCCCATCTGGACTGGGAGAAGGTGGCCTTCAACTCATTCACAGGAGAGATGTGCAAACAGAAGTGGAACGAGGTCTCCAAAGTGATCCGCAAATTTCGCACATTAACAGAGCTGATTTTTGATGCCCAAGACTTCATCAAGAACCCTTATAAGGGCAAGAAGCTGAAGAAGCATCCAGACTTCCCTAAAAAGCCCCTGACGCCATATTTCCGCTTCTTCATTGAGAAGAGGGCCAAGTATGCCAAGCTGCACCCTGAGATGAGCAACCTAGACCTCACCAAGATCCTCTCCATGAAGTACAGAGGGCTGCCTGACAAAAAGAAGAAAAAATATCTAGAAGACTTCCAGAAAGACAAAGAAACGTTTGGGCACAGCATGTCAAAGTTCAGGGAGGACCATCCCGACCTGGTGGAGAGCATGGCAAAGAAAGGTTCTAATGTGCCAGAGAAACCCAGGACGCCTCAGCAGCTATGGTACAGTCACGAGAAGAAGGCCTTCCTCAAAACACACGCAGACGCGACCACCAAAGACATTAAAGACAGTCTTGGGAAGCAGTGGACACAGCTGTCAGACAAAAAGAGACTCAAGTGGATTGCCAAGTCCCTGGAGATGCACAAAGCATATGAGGAGGTGATGAAGGGCTTCATTGAGACTCACCCAGAGCTCAACATGAGCAACGAGGACATCGTCAAGTCCACCCTTACCAAGGCTGAGAGACATCTGAAGGACAAATCTGATGGCAGGCCAGACAAACCACCCCCgaaTGGTTACTCCATGTTCTGTGCTGAGTTGATGTCTAGTATGAAGGACGTACCCAGTACAGAGCGCATGGTCATGTGCAGCCAGCAGTGGAAGCTGCTAAAACAGAACGAGAAGGACGGCTACCAGAAACGCTGCGAGCAGagaaagaaagaatacGAAGTCGAGATGAACCGGTTTCTTTGTAGTATAtcagaggaggagcagcagcgtgTGCTGGGGGAGCAGAAGATGATTGGCTTTAAGAAGGGTAGCGGGGGCAGCAAAAAGAAGAGCAGAGCAAAGCCTAGCCCAGAGAAGCCCAAAAGGCCCATCTCGGCCATGTTCATCTTCTCTGAAGAGAAACGACCCAagctgcagcaagagcgaccagACCTGTCTGACAGTGAGCTCACCAGGCTGCTGGCACGCATGTGGAACGAGCTCTCAGATAAGAAGAAGGAGAAGTACAAGCGCCTTGAGACGGTCCTGAAGGCAGAGTCTGTGAAGAAAGGACAAGAGGAGCGCAGCCAGCTGCCAGACACACCCAAGACTGCACAGGACATCTGGCAGCAGAGCGTCATAGGAGACTACCTGGCCAGGTTCAAGAACGACCGGCCAAAAGCCCAGAAAGCCATGGAAGCCACTTGGAACACCATGGAGAAGAAGGAGAAAATCATGTGGATCAAGAAGGCAGCTGAGGACCAGAAACGATACGAGAGGGAGCTGAGTGAGATGCGCTCTCCTGCAACCATCATTGCCTCAGGGAAGAAGATGAAGTTTGACGGTGAACCCAAGAAACCCCCATCGAATGGCTACCAGAAGTTCTCTCAGGAGATGCTGTCTAACGGAGAGCTGAACCACCTCCCTATGAAGGAGCGCATGGGGGAGATCGGGGGCCGCTGGCAGAGGCAGCCCCAGAAGGAGAAGGACCGCTACAAAAAGATCGCTGAGGAGAAACAGAAGCTGTACAAAGTAGAGCTGGAGCGGTGGCTGGCGAGCTTGTCCTCACAAGAAAGAAATGTGTACAAGGAGTACAACTCACAAAAAAGAAAAACCCCAGTGAAACCAGGAGGCACTGCAGCCAAAGTTAAGGCCAAGGTAATCAAGAAGTCGGACACAGAGGACGAGGATGAAGATGACGAGGAGTTAGAGAAGgaggctgcctcatcagataacGATTCGTCCAGTGCCGAGGACAGTGAGGAGgaagatgatgatgacgatAATGAGGAagacgacgatgatgatgatgaggaggcgGATGATAAAGAGAACAAGTCGGAGGGGAGTAGCAGCAGTGACTCGAGCTCAGTGGAGACATCGGACTCTGATTCAGACTGAAACTGGTCTATGGTGACCCAAGAGAGACTGAGCAGCGCTGAGCCAAGAGTTCAGGGAGCGCTGCTACTGTGCTGGCCCTGCTCTCCTCACAACCCACCACCAGAGGGAGCCATTTCCATTTCTCACTCGCTTTCTCTCTTCTGTGTTTCTTCATTGTTGTTCTGTACAAGGAGGGTGAAGACCCTAACACCACCACATCATGTCCTTCATCTGTAATTCCTCCAACCCTGCCTTGACCTGCTCCCCTGCCCAGCCCACACAGCGCTGGGTTCAGGTGGGGACATTTGGCTTCCTTTCTATATTCTGTGACTAATAGGTTTCTATTAGCTTTTTTGGGGGTGACTGTTGATTTTGGCCCCATCCTGTTTTGTCAGTGTCTGTCAGATGCTAGAGGCCACGGTTGTGAAGGGGGGAGCGGGGAGTTGTGAACAGGCCTCCGAGAGCCAAAGAACCTATTTGTCTGTGGGATTATTTTGGGGTGGGGGGTGCAGGGGACCAAATAATTGCACTCTTGAGAATGTTTCCTTTAGTCTTTTGTTCTTCAGCGCCTCTCAACTTTCTTCCTGCTCTCAATGTGTATGTTTTAATTATTAGGTTCTTAACGAGGTGGTATCTTCAGGAAAAATTAAGCCATTATGAATGTCTCTTGTTGTTGCTGGAAATTTAGAGGAGATGTATTCATCCACAGTTTTAGTTAGATTTGGATGCATTTAGAAAAATGGCTTTTACCTGTCTTTGACAGGTGTTCAAGTTCAAAGGTGACTGACAGTCTATTTATTTATGCTACATAGAAATGCGTCCAAGCTTTTTTGGGGGACAATTTCAAGGGTCTTTGTGGAACAAGTCCAAGACAATTCTGTTTGACTCATGTTGGTTCTCATGTTGATTTTTCAGTTTAGATTTGTTCATCCACTGGCCTGTTGAACAGAATAAATAATGAATGTTTCTTAGTGGTATCAAAGGAATATATCGTTTATCGATTAAGAGTTTTTGCTTGCCACTCTTACAGAGTAGTTATTTTTGCCCGGACTGCAGATATGAGATTTAATTCCAAACAGACTATGTTGTACAATTTAATATTGGTTTTGATTTCTTCCTTGAACCACTGTTTTACACTTCTATTTGATCTAAAGCTGATTTAATGAATTTGTTTTAATAATGTCGAGGGCTGTGGTCAGTTCCATTTGAAATCAGGGATAGATTGAAATGGATCCATTTAGttcttttaaataaaataaaattgaccccaaccccgaTATTCTTTTAGTCGAAGTATCCCAAAAAAGCTTTGCACTTAATGTAAGCCTGTCCCATGCTTACTGTGGTCAACAGTCAACTGTTCAGCCCCTTCATGTGTTTGTGAGAGCGACTGCATTGGTGTGTGCTGTCTGCATCCTGTGTTTGACTGTGGCTTCGATTATCTACTCTTCTCCGTGTGTGTACTTCTCCACTGCCCAAGGATTAAAAAACATTTGCTTGGTGAGAGAATGGGCTAGACTGTGTTCCTAAAATTTTTTCTTACACCAGTCGCATGCTTTTAAATCCTTGAGGGGCAGTGAACGAGTTTGCACTTAGGGGAGAAGGGTACAGAACCCGACTGCAATCTGTGAAGGATGTATGTGCCTGTGTGGTGTAGGAGGCACTTCTCATCCCATTACAACACAAACACCTTGATGTAGATTTTTTAAATGCCCTTTTCTCAAAATGATTGAAGCCGAGTCATGTGTGGTCCTGTTGGTTACCAGCACAAGGACAGATACGTTAGACGGCCCACTGGACTGGTTATGTCATAAGTTTAGCTTGTTTCCAGGGCAGTACAATGGGTTAACAATGGCCCCAATTTTAAATGGGACTGAGTTAGTCCATTTCTAAATCTCATAATTGTTGACTGAATAACACCAGCATGGTGGGCTATATATGATTTGGTGAAGGGAATGTGGGAAATGTTATGGAGGGTGGGATACTGGATATGGGAAAGGGATTTGGGGAAAGGTGTTGCCAATGGGGATACaacatacatgttgtatggtATTTGTAAATATTGCTTTTTTTGTATTGTGTGGAATTACTTTGATTTGTAGTTTGATTTATTTGGCCAAGTCTTGTCAGTGGCTCCGTCGGAGGTGGGAGTCCATTGCTTGCAGGGGAAACGTTTTTGATTGTGTTTGTCCGTTTTAGTTATTATCTCTCCCCATGTTGGTTTCTTTGTATAAATGACTAAATGAGAACGGCTTTACAGATTTGTACTGCTGATCATTTGACACATTTTTGATGTTTTCTATAGCGGAGGGTGTGATGTCCCTGCTATTTAAGCATTTGGCAAATAAACTTGGTCTTTAATAAAGTA

Function

GO: NA

KEGG:

id description
K09273 UBTF; upstream-binding transcription factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1350253 lncRNA upstream 1209 50089178 ~ 50090662 (+) True LOC100136769
TU1350259 lncRNA upstream 15941 50073913 ~ 50075930 (+) True LOC110486703
TU1350249 lncRNA upstream 19808 50068908 ~ 50072063 (+) False LOC110486702
TU1350275 lncRNA upstream 27512 50063540 ~ 50064359 (+) True G1183980
TU1350268 lncRNA upstream 48524 50043138 ~ 50043347 (+) True G1183973
TU1350344 lncRNA downstream 105089 50219052 ~ 50219903 (+) False G1184046
TU1350343 lncRNA downstream 105724 50219687 ~ 50220138 (+) True G1184046
TU1350380 lncRNA downstream 153060 50267023 ~ 50267498 (+) True G1184078
TU1350483 lncRNA downstream 303733 50417696 ~ 50418945 (+) True G1184178
TU1350606 lncRNA downstream 486986 50600949 ~ 50601164 (+) True G1184296
NM_001124717.2 mRNA upstream 1215 50079281 ~ 50090656 (+) False LOC100136769
LOC110486703 mRNA upstream 15615 50073605 ~ 50076256 (+) False LOC110486703
XR_005035581.1 mRNA upstream 19808 50068892 ~ 50072063 (+) False LOC110486702
XM_036939763.1 mRNA upstream 292032 49799387 ~ 49799839 (+) True LOC118938084
XM_021558476.2 mRNA upstream 378257 49607479 ~ 49713614 (+) True LOC110486697
XM_021558492.2 mRNA downstream 405 50114368 ~ 50123426 (+) False LOC110486708
XM_021558495.2 mRNA downstream 405 50114368 ~ 50123426 (+) False LOC110486708
XM_036941408.1 mRNA downstream 405 50114368 ~ 50123426 (+) False LOC110486708
XR_005035582.1 mRNA downstream 405 50114368 ~ 50123426 (+) False LOC110486708
XM_021558494.2 mRNA downstream 409 50114372 ~ 50123426 (+) False LOC110486708
TU1350149 other upstream 208436 49882821 ~ 49883435 (+) True G1183875
TU1350070 other upstream 256857 49832221 ~ 49835014 (+) True G1183819
TU1348832 other upstream 507309 49580326 ~ 49584562 (+) True ndua4
TU1348815 other upstream 665648 49419570 ~ 49426223 (+) False G1182742
TU1350772 other downstream 871850 50985813 ~ 50986566 (+) True G1184435
TU1351847 other downstream 1270209 51384172 ~ 51392082 (+) True LOC110487554
TU1351876 other downstream 1331944 51445907 ~ 51446557 (+) True G1185436
TU1351980 other downstream 1513719 51627682 ~ 51628676 (+) True G1185521
TU1351986 other downstream 1537650 51651613 ~ 51653770 (+) True G1185527

Expression Profile