RNA id: XM_021558494.2


Basic Information

Item Value
RNA id XM_021558494.2
length 3317
RNA type mRNA
GC content 0.43
exon number 14
gene id LOC110486708
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 50114368 ~ 50123426 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCCTTTCTCTGCCATTTCCCCCTACTTTAGGCCAAGTAAAACGGCACGGAGAACCTCGGTGATCGTTTAGTGAGGTCTGTTAGGAAGGAAAATGGCAGCCTCTTTTTACATTTTCGTATTTCCCTTTGACTGCTCTGTGGGATCACATTTAAATCACTAGCTAATAGCTACAACATGTATCATCCTAGCTAGATACAATGTAGCAAAATAATCTATTGTCAATGTCCAGCTAACGGTTTACGGTTCACGGTTCAATCATAGATTGGTCGTTGATGCTAACCAAAACAATATCAGGCAGTCACCTCTGCCAACTATTAGCGAAGAAGAGGTCTCAACTGAGTATCGGTGCTCCTTTCTATGTTGTCCCCCATAGCTGTGCCATGTAGAAGGCAGTGATTCGCCCTTAAACTTTTGCAAATGAAAATGGAGGATATGTCTCTGTCGGGCCTGGACAACACCAAGCTAGAGGCCTTGGCTCAGGACATCTACTCGGACCTGGTGGAGGACGCCTGTTTGGGCCTGTGTTTCGAGGTGCATCGTGCTGTcaaacagggctacttcttcctGGATGACACGGACCAAGAAAGCATGAAGGACTTCGAAATCGTTGACCAACCAGGAGTGGACATTTTCGGGCAAGTGTACAATCAGTGGAAAAacaaggagtgtgtgtgtcccaACTGCAACCGGAGCATTGCTGCGTCCCGCTTTGCCCCTCATCTGGAGAAATGCTTGGGCATGGGGCGCAACAGCAGCCGCATCGCCAACCGCAGAATAGCAAGCAGTAACAACATGAACAACAAATCAGAGAGTGATCAGGAAGACAATGATGACGTCAATGACAATGACTGGTCGTATGGCTCAGAAAAAAAAGCTAAGAAGAGAAAGTCAGATAAGAATCCAAATTCACCCAGAAGATCAAAATCTGTAAAGCATAAAAATGGGGAGCTTAGTAATAGTGTCAATGCAGATCCATACAAGTACAACTATAACACTGGCATCAATTACGAAACTTTAGGCCCTGACGAACTGAGGTCTCTGTTGACAACACAATGTGGAGTGATCTCAGAGCACACCAAGAAGATGTGCACCAGGTCCCAGCGGTGCCCCCAGCACACGGACGAACAGAGGAGGGCCGTCAGGGTGTTCCTCCTGGGGCCGTCCGCGTCGTCTCTGCCCGATGCAGACACGATGGTGGAGAGTGACTGCTACGACGCCTCAGACGGACAGGTTCTCATGAGTCGCCTACAGTGGGACGGATCCTCAGACATCTCCCCCTCCGATTCAGCCTCCTCCAAAGCTAGCACCAACAACTCCGATTCTAAGAagcccaagaagaagaagaagatgtctCTTGGCCTAAACAGcacaggaggagggggaggcagtGGGAGTGGAGGGGGCAGTAGCTCCCAGACTAGTCTAGTAGGCCTATCCAACAGAAAGAAGAAGCCCAAGCTTCCTGTTCCCCCTGCACCCAGTATCTATGACAACCTAAACTAGGGTAGTCCCAGTCTGCCCCCACCCCCAGGAAGGTGACTGGAGGGTGACATGGAATTCTGAACCAGGCTTCATCCACTCATCCAGCTCCCCAGCCTGTCAAGTCATGGTCTCATACCTAACAGAGGTACAGATACCTGTGTCCTCTCAGAGGCAAAGATGATAACCCATTAAATCACATCCACTCACTCACTTTAATATCAGCTCTGATTAGCCCAGGGGTTGTAACTTCTCTTTTTTCATAACTGGACACAGCACCCCTTCATTTGAACGCCATTCTTATTTGTTTGTTGTTGAATACAATATTTAGCAATTCCAGTTATAAAGAAACATGGATTGTTCACTttaattatgtttttgttaatcaGTGATTTAGGCTTCAGACATGGACCAATCACACTCCGCTTTTTTGCACTCTGATCTGTTTTCTCCTGAAAACAAAACATTGCTTTATTTTtgactctgtctctgtttagGAGGGGACTTGTGGACTAATTGCATCACCTTACGACTACAGCGTTGTTATTGTGGTGGAGGATGTCAGTGCCATCTTGTTGTTTCACCAGTATTGGGGTACTTGATGGTGGCTTTATCCGTACTAGCATTGTATTGCACAGTGGTGTATGTGTGGTTGCATGTGTGTATGAATGTTTGTTGTGTGAAGTTGACTGTTTTCCGTGTTGTGTGTGATTTAAGTTGTTTTCAGATTACTATGCATCTCTGAATGTGCCATTGTGGTTGAGTCAGTATATGTGTTGTTTTGTATATTTAACTTTTTTGGTTTACATTGACTGTGTCAAGTGAGAATGTGTATTTAATGTCTGCACTCAGTAAATTGTAAATGCAGATGTTGACATGTATCATGGAGTGAGCCAGTGTGTTTTTGTATACCGATACATGTGGTATGATGACCTATGTAAAATAATCATGATTTAATTGGATACTGTTTACATACACGGTAACCTCTCTACCATACACAGCTTCATGCTAAACAGTGCTTCTTCCCTGTCTATCTTTACTGTTTCATACTCAGTCTGAAGTTGCTCTAATCTGCTTCAGCTGCAAATCACAATATCACTCTATACAAGTTGTAGATCTCGCATTGCTTCCTGTTGAATAATGCTAAAGTATAGTGGAGTCATCCTGCTTTTTTCCCCAATAATACTCTAGGTCAATCTGCATCACTTGACTTGATTTAAAAGTCTGTCTCTGCTTGTGTGCAGTGTCTATGCGCTTGAAGGAATTCAAATCCGCTGCCACTTGCAACAGAAGTGCCATGGCTGTTGCATGGGATATTTCAGACTGTTATTCTTGCCATTTTCAGTTTTACTCTAGCTAACGAGTTAAGTTTGATATATGTTATTCATTCCTGTTTGAGAGGCCCATCAGACTATACTCGCTGAGAATCTTATATACCCTGAGCTTTCATTTAGAACATTCAGCCAGTGATTAAGTATGACATCACTTTAATGTGCACTAAAAGAATCAACCTTCAAGTGAAAAAACACCTATTTTGGGTATGGATCATTTAATTTGTTCCTCTTTACTGACAGGGTAAAGAATGTCCTGTATTACTAATGCTGCGTAACTGTTTATTTGTGTGTATCGGTGTGTCTGAACAATATGAGTGTGGACAAATGACGCAATAGAAAGTGTcttcacaaaacaaaaacaacttttttcatgcacgtgtgtgtgcatgtgcaaatATGTCAATTGTATATTAATGTGACGCACAGCTAGATTTTCTTTATATCTCAGTTTCCCAAGTGTACAGAGGTTTCTTTGTCTGAGTAAAATTAAGTGTCATTCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1350253 lncRNA upstream 23710 50089178 ~ 50090662 (+) True LOC100136769
TU1350259 lncRNA upstream 38442 50073913 ~ 50075930 (+) True LOC110486703
TU1350249 lncRNA upstream 42309 50068908 ~ 50072063 (+) False LOC110486702
TU1350275 lncRNA upstream 50013 50063540 ~ 50064359 (+) True G1183980
TU1350268 lncRNA upstream 71025 50043138 ~ 50043347 (+) True G1183973
TU1350344 lncRNA downstream 95626 50219052 ~ 50219903 (+) False G1184046
TU1350343 lncRNA downstream 96261 50219687 ~ 50220138 (+) True G1184046
TU1350380 lncRNA downstream 143597 50267023 ~ 50267498 (+) True G1184078
TU1350483 lncRNA downstream 294270 50417696 ~ 50418945 (+) True G1184178
TU1350606 lncRNA downstream 477523 50600949 ~ 50601164 (+) True G1184296
XM_021558485.2 mRNA upstream 409 50091337 ~ 50113963 (+) False LOC110486704
XM_021558490.2 mRNA downstream 7018 50130444 ~ 50135991 (+) False LOC110486706
XM_021558488.2 mRNA downstream 7018 50130444 ~ 50135992 (+) False LOC110486706
XM_036941411.1 mRNA downstream 7018 50130444 ~ 50135992 (+) True LOC110486706
XM_021558500.2 mRNA downstream 28954 50152380 ~ 50600432 (+) False LOC110486711
XM_036941412.1 mRNA downstream 281411 50404837 ~ 50600432 (+) True LOC110486711
TU1350149 other upstream 230937 49882821 ~ 49883435 (+) True G1183875
TU1350070 other upstream 279358 49832221 ~ 49835014 (+) True G1183819
TU1348832 other upstream 529810 49580326 ~ 49584562 (+) True ndua4
TU1348815 other upstream 688149 49419570 ~ 49426223 (+) False G1182742
TU1350772 other downstream 862387 50985813 ~ 50986566 (+) True G1184435
TU1351847 other downstream 1260746 51384172 ~ 51392082 (+) True LOC110487554
TU1351876 other downstream 1322481 51445907 ~ 51446557 (+) True G1185436
TU1351980 other downstream 1504256 51627682 ~ 51628676 (+) True G1185521
TU1351986 other downstream 1528187 51651613 ~ 51653770 (+) True G1185527

Expression Profile