RNA id: XM_021558491.2


Basic Information

Item Value
RNA id XM_021558491.2
length 1632
RNA type mRNA
GC content 0.55
exon number 7
gene id LOC110486707
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 50127555 ~ 50130302 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGGGCAACAATATCTTGTGAAAGGACATTTGGACGTGTCTGTAAAACACGTCATGAAGTAGTCGTATGCAAATTACATTATCCACAACAGCAAATGTGCTATATTTTGTATAGTAACTTACTTGAGTTCACATGAAAAAAATCTGAATTCACAGTGGTGACAAGTTCAAGACCTCAGTGGGTTGCTTGAGATTCTGCTCCAGCTTTGGGTGTCATGTCCAGGGACACATTTGCCTTCAGCTCAGCCGCCTTGCATTCTCTGAAAGTGGATCAGGAGCTCCAGGAGTGGAAGGATAAGCGGCAGGCATTGGCCCACAGGAGGGCCATGAGCCGGCCACCTGTGTCCCGGGCCTCCAGACCCCCTCCCAGACAGCAGCAGGGCCTCCAGGAGATCTGGGTCTATGAGGCCCGATGCAGAGACACCACAATCCACAACACATTAATGTGTGGGGACATGAAGGGAGTGCACACTGTGTTAAAGGACCCCTGCATGGTCAACGCACTGATGGAAACAGTACATGAGGAGATGGTGTGGGCTGCAGAGCTGGGGATGTGGACCATGAGCTCCAAGATCAAGCAGACATCTGCATTGCGTCTGGCAGCCAGCAAGGGACACTCAGGCTGTGTGGAGGAGCTGCTGTTTCGAGGGGCGGAGGTGGATGCTGACCCTGGTGGCAGCACAGCCCTGCATGATGCCTGTATAGGTGGCCATGACAGCTGTGTCCAGCTGCTGCTAGCCCACAGAGCAGACCCTGACCTGCTGGCAGAAGACGGCAGTGCACCCCTTCACCTCTGCAGCACAGCCCAGACATTTCAGTGTGCTGAGCTGCTGGTGACGGGTGGGGCAGAGGCCAATGTGTTGACCAGTGAAACAAAGATAACGCCCCTCCATGTGGTGGCTCGTCGGGGTATGGAGGAGCATGTGAAGCTCTTTCTGTCCCATGGAGCTGACGTGTCAGCCAGGAACCGTGAGGGGGAGACCCCCCTGAATGCAGCCTGTGGTGGGGCTGAGAGGCCTGCCGAGGCTGGGCGGTACCTCCGCATGGTCCAGATGCTGCTGGGAGCTGGGGCTGACCCCTGCACTGCAGGCAGGAAACACCACACACCTCTACACAACGCCTGTAGTAACTGCAGCCCACGCATTGCAGAAATGTTACTACAACACGGAGCCAAAGCAGACGTGCAGAACTGTGCAGGATACACACCCATGGACTGTCTGTTACAGGTGGTGGAAGACTTTCCAGACCAGCATCCGGAGGCTGTAGCACGCTCCCTCCTAAACCACGGGGCCAAGGCCGGTAAAAGCTTGATGCTGaagctctgcctcctctcccctgccACTCTGGAGGTAATGCTGAACTGCTATGCTGTTGTCCCTTCCTGTGAGGAATGGATGCAGTCTATCCCTCCTGAGATACATGAGACGCACCAGGGTTTCTTTGACTCTGTGAGGCAGATGACGAGCCAGCCCCGCTCCCTGCAGCACCTGTGCCGCTGTGCTCTGCGCCGCCACTTAGGAAAAGGTATCGACGCAGCTATCAGTAGATTGGACATCCCCAGCTCTCTGATGGAGTATCTACTACTTCGGAATGACGGGGAGATTCGGTGAATAAAGTGAAACACATGGGACA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K10338 ASB16; ankyrin repeat and SOCS box protein 16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1351049 lncRNA downstream 22489 50103579 ~ 50105066 (-) True G1184672
TU1351048 lncRNA downstream 32444 50092216 ~ 50095111 (-) True G1184671
TU1351046 lncRNA downstream 34485 50092560 ~ 50093070 (-) True G1184669
TU1351045 lncRNA downstream 42839 50079143 ~ 50084716 (-) True G1184668
TU1351037 lncRNA downstream 62367 50048786 ~ 50065188 (-) True G1184661
TU1351170 lncRNA upstream 174535 50304837 ~ 50305278 (-) True G1184782
TU1351288 lncRNA upstream 364672 50494974 ~ 50495465 (-) True G1184896
TU1351358 lncRNA upstream 472542 50602844 ~ 50603081 (-) True G1184958
TU1351363 lncRNA upstream 477318 50607620 ~ 50607896 (-) True G1184963
TU1351364 lncRNA upstream 477667 50607969 ~ 50608323 (-) True G1184964
XM_021558499.2 mRNA downstream 354 50123190 ~ 50127201 (-) True LOC110486710
XM_036941405.1 mRNA downstream 60157 50059034 ~ 50067398 (-) False si:ch211-214j24.15
XR_005035580.1 mRNA downstream 60157 50059035 ~ 50067398 (-) True si:ch211-214j24.15
XM_021558480.2 mRNA downstream 60160 50059035 ~ 50067395 (-) False si:ch211-214j24.15
XM_021558479.2 mRNA downstream 87222 49970722 ~ 50040333 (-) True LOC110486699
XM_021558504.2 mRNA upstream 500703 50631005 ~ 50633690 (-) True LOC110486713
XM_021558507.2 mRNA upstream 517132 50647434 ~ 50653284 (-) False LOC110486716
XM_021558508.2 mRNA upstream 517132 50647434 ~ 50653284 (-) True LOC110486716
XM_021558516.2 mRNA upstream 559880 50690182 ~ 50697090 (-) True LOC110486719
LOC118938085 mRNA upstream 589510 50719812 ~ 50730095 (-) True LOC118938085
TU1350091 other downstream 291223 49835663 ~ 49836332 (-) True LOC110486698
TU1349952 other downstream 439099 49685338 ~ 49688456 (-) True G1183706
TU1349444 other downstream 583279 49537199 ~ 49544276 (-) True LOC118938314
TU1349433 other downstream 623545 49486926 ~ 49504010 (-) False LOC110486687
TU1351387 other upstream 496345 50626647 ~ 50628539 (-) True G1184986
TU1351422 other upstream 626336 50756638 ~ 50758044 (-) False LOC110485208
TU1351447 other upstream 649963 50780265 ~ 50781858 (-) True G1185046
TU1352616 other upstream 1191498 51321800 ~ 51323931 (-) True G1186080
TU1352611 other upstream 1222007 51352309 ~ 51373954 (-) True G1186075

Expression Profile