RNA id: XM_021558507.2


Basic Information

Item Value
RNA id XM_021558507.2
length 2791
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC110486716
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 50647434 ~ 50653284 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAGGGTATCTGTCTCCTGTGCCACAGGTTGACACTGGGCTCAGGTACTGTAACACGAGACTGAAGTGAACCATGTGACCATAGGGGCGACGTGAAGAGGGAATTTAAAAAACGGTTTTACATAGTTAAATCTATACAGGTAGTCTACGGTGATATATATCAAAATAAACCCATTCAGCCAGTAGAACGGCTTTGCGATCGGATTTAGTTTACAGATTATTTTTTCAGACGTTGTTGGGAAAGGTTTAATCATAAACACGTCCTGACATATGATCCAGTTTCGGTTCACCAACTCACTCGTTTAGGTGAGGCGGCGGAAGCGAGACGTTGTTTTTTTTCCCGCAAGGAGTTGGATTGATCCCCGTTGCCTAAAACAGATATCAACTTTATTCGGTGAAACGAGCGGCCCTGGAGACTGACACCGGTGTGCTTGTCTGCTGAGCACTACTCCTGATGATATGGCCCCGACCTGATGTCCAGGCGTCCCCTTGCTGATGGTCTACCCTCTTTAGAACCCATTGGTTTGAATGGAGATGGCACTGCTCCCAGACATCGCGGCCTGGCCTGGTCTCCTGGCTGGGAGTGTCCTACTCCTGGTTTTGGGGAGTAATCCTTCCTGGGTTGTGGGGGACAACACAACTAATAGTCTACCCTCTAACACAACTGCCCCAGAACCCAACATTGCAGCTATTGTGGCCCCGACTGTTATACTGGGGCTGCTGGCCATAGCAGCTGCTGTGCTAGTGTGGCTTTTCTGCGTGGTGAGGAAGAAGAGGCAGACGGAGGGGACGTACCGGCCCAGTGCTGAGGAGCAGACGGGGGCCAGCAGTGTTGAGACACCAGACGCACTCAAACTGCCCAAGGAGGAAAGACTCATCTGAGCCTAGTCTCTCAGAAGTCTCTCAACACCTGTCCTGTACATCCAAGCAACAGCTAAATCCTGATGACTGTAGAAGCTCCACCTAAAGAGCTGATGATTACCTAGATATTAGAGGGTCATGACACAATGTTGACAGATACAGGATGGGACAAGAGGTACACAGCACCTAGCCCTGGAAGAGGAGGGCCCAGGCACTGTGTACTGTACGTACTGCAAGCACATGGACTAGTGCTAGTACAGGACCTGGACACAGACGTTGGGATAGCTACAGCAAATACCACAGCCTGTAACTAGAACAACTAGAACTAAGGTTCATGGGGCTCTGACTGCTTTCTCTATGGTGTGTTATTTAATAGCACTGGAATATTTGAATGGGATAGACATGTACACAATCATTCAAATGGTCATACTGGAAGAGGAAACAAACCTTCACCTGCACTAGATGGAAGAGGACCAGTATTCAGTCCCTGCTCATACTCGTCTTTGGTAAATACATTTCAGTCTGAGTATTTCAGTTATCTGTCTAGGCAATTTGTCTCTCTCAACAGCTACAAAAAGGCTGGATACAGTCTTAACTGCTATAATCGTAAGCAGACTGCTGTTACCTGTGCTACCTTGATACATGTAAAAAATTATATTGGAATGTAATGTATATGTTCGTATAAATGCCTTATAGATTACTTAAATTTATAGCGTGCAATAATGTTTGTTTAACCACTATTGATTGTCAGAAAAGCATTTCATTGTCTAGATTTTTCACTGATTACTTACCTCAATTACATGTCtcactactgaatcagtcctgtATCAGTCCTGTATACAGCTTTACAGATAATGACACGGTAAGCTAATATTATCTGGAAAACATTTCTCCCAGTGGGATATTCTGTTTGCGGATACTGTGTGCAGAACAAATAATTATGTCATTATTAATAATATTTAAGCACAAAATTAATGATTGTTTACATTTGAATAATTGTATTGAAGTATTTCAGAATTGTTACATTAATTTAACATTGGCTGAAATGTGATACTACATTAGATCATATCTTCTATGTGTGTTCTTACCAGTACGCTGTTTGTATTTTGAAAAGCCTATGATGGGGTTCAATTCTCATCATGTAGAGTTGTTATACAATGTCGTGACATATTTATCTTTTGCAGCCTACATTTTAAATAAATACCAATAGTTATTTTTAGAATTGGCCACCTCAGTAGATTTTATTTGCATAATCAGTGCTGGACTTTGATCAGATGATGTCAAgacttgcttctctctctctctcttgtgaaAACACAACCAGACTTCTATGAGGAATTAACGAGAGGGCAAAAGTTTAAGACAGAGCATCGTATAAGCTGACATCATGTATCAGACATCCCTAAAATGGTGAGTGTGAAGTGTATGAGAAATAACGCACTTGCTCAGCATGCAGACCTTACTAGTCAGCTTTCGGTGAAGCTGTGATTGACAAAATAGCTTCAGTCAGAATTATTAGCCAGTGGCAACTGACTGCAGGAGCTGGGAAGTGATGACTGCTGAAAACAATGAATCCAAGTCTTTAACGGTCACTATACGTCAGTCTCATTTCTCCTGTTGTTACGTTCTAGGAATGCATTCCAATGCAGTTTATTGCTACTAACTCATTGGCATGAACCCATAGTGGGCAGTGCAGTTTGTCTTCAGCCTATAGTTAATGCTCCCTCACAAACCCAGTTTCCAACTGTGGTTGGCCTTTTCTGGTTTGTAAATCTGCTTTTACCTTTGACATTTTGGGCTCATAGCTTCAAAATCATATAATTTACAGTATGTGAACATACTGTAATTGTACATGCTAACTTTAACCTAGTGTGTCATTTCAATTTCATGTTGTACAGTAATCAAGTCTATATAAGACCATATTAATTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1351365 lncRNA downstream 38630 50608605 ~ 50608804 (-) True G1184965
TU1351364 lncRNA downstream 39111 50607969 ~ 50608323 (-) True G1184964
TU1351363 lncRNA downstream 39538 50607620 ~ 50607896 (-) True G1184963
TU1351358 lncRNA downstream 44353 50602844 ~ 50603081 (-) True G1184958
TU1351288 lncRNA downstream 151969 50494974 ~ 50495465 (-) True G1184896
TU1351396 lncRNA upstream 25255 50678539 ~ 50681764 (-) True G1184995
TU1351411 lncRNA upstream 40538 50693822 ~ 50694029 (-) True G1185010
TU1351380 lncRNA upstream 50195 50703479 ~ 50703982 (-) True G1184979
TU1351379 lncRNA upstream 54583 50707867 ~ 50708718 (-) True G1184978
TU1351413 lncRNA upstream 55608 50708892 ~ 50709127 (-) True G1185012
XM_021558504.2 mRNA downstream 13744 50631005 ~ 50633690 (-) True LOC110486713
XM_021558491.2 mRNA downstream 517132 50127555 ~ 50130302 (-) True LOC110486707
XM_021558499.2 mRNA downstream 520233 50123190 ~ 50127201 (-) True LOC110486710
XM_036941405.1 mRNA downstream 580036 50059034 ~ 50067398 (-) False si:ch211-214j24.15
XM_021558516.2 mRNA upstream 36898 50690182 ~ 50697090 (-) True LOC110486719
LOC118938085 mRNA upstream 66528 50719812 ~ 50730095 (-) True LOC118938085
XM_036941419.1 mRNA upstream 78813 50732097 ~ 50824433 (-) False LOC110485208
XM_036941420.1 mRNA upstream 78813 50732097 ~ 50824433 (-) False LOC110485208
XM_021558541.2 mRNA upstream 174111 50827395 ~ 50832708 (-) True LOC110486728
TU1351387 other downstream 18895 50626647 ~ 50628539 (-) True G1184986
TU1350091 other downstream 811102 49835663 ~ 49836332 (-) True LOC110486698
TU1349952 other downstream 958978 49685338 ~ 49688456 (-) True G1183706
TU1349444 other downstream 1103158 49537199 ~ 49544276 (-) True LOC118938314
TU1349434 other downstream 1143424 49486926 ~ 49504010 (-) True LOC110486687
TU1351422 other upstream 103354 50756638 ~ 50758044 (-) False LOC110485208
TU1351447 other upstream 126981 50780265 ~ 50781858 (-) True G1185046
TU1352616 other upstream 668516 51321800 ~ 51323931 (-) True G1186080
TU1352611 other upstream 699025 51352309 ~ 51373954 (-) True G1186075
TU1352690 other upstream 836493 51489777 ~ 51490241 (-) True G1186154

Expression Profile