RNA id: XM_036941415.1


Basic Information

Item Value
RNA id XM_036941415.1
length 5100
RNA type mRNA
GC content 0.43
exon number 10
gene id LOC110486718
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 50659213 ~ 50681790 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATGCACGAATAAGACGAACTTTTGGAAGCGGTGAATCACACCTGAATTTCTCGACCATTGAGTTAAACCAAAATCAGCAAGGAAAAACCAACCATTTGGCAAACAAGAAGAAaataatagatgacgttattagcTGGTCTGAGAAGGCGGGCTAAAAAGACAATTTGACAGATACCAATAGACAAATCACAACATCACAACGATTGGATTTACTGATGCATATCCAATCAACAGTTGTCTCGTACTGTCTGTCACATAAGTATTGACCAATGAGGTATATTCAGGGGGTGGATCTCTGAAGCAAGAGTTCGTCTCTCTGTAGTCTGAGGATTAATGGAGGGCTGTTGATTTTGGCAAGTAAACCACAGCTGATCGGATCTGAAACCTGAGAAATCATCGGACCTGAGCTCCAGGAAAGGGAGGGGCTGCTATCGATTTGCAATAATAATTACTTGGAAAAGTGGATATATAAGGTTTTTGTGTCGGAATACATTGGAAAGTAAAGGGCCTTTAGTGGGGTCTgtaagtgactgactgactgatagatAGTTAGCTAGGAAGGCGACgatagctagcgagccagccaggcGCGCCGAACCGGTTCGACGTTCTTGATTGTACCAGGTAGAGAGAGCTAAGCAACATTCGCAACAGAATTAGAGGGAAAAccggctagctagctaggttgttGGCTAGCCATTGGCTGGCCAGCTAGCTAGCCtgtgcagctagctagtttacccCCCCCAACCGCGGATAAAGGAAAAGTAGTAGCGGAGTACAATTGACTGTTGGCTAGTTAGCCATGATAACAGCCAGCTAGTAGCCAGCTTCCTTAAATACAGAACTCAAAAGGCTCCTGAAAACTCAAAAGTAACCCAGATCCAAGGGATCCCTATCGGCCTGCAATCATGGGCAACGCGCCCACCGCCAAGAAGGGCAACGAGATGGAAAGTGTGAAGGAGTTTCTTGCCAAAGCCAAAGAGGATTTCCTCAAGAAATGGGAGAATCCAGCACAGAACACCGCAGCCTTGGATGGCTTTGACCGTCTGAAGACCCTGGGCACGGGCTCGTTTGGTCGAGTCATGCTGGTCAAGCACAAAGAGTCGGGCCAGCATTTTGCCATGAAGATACTTGACAAACAGAAGGTGGTGAAGCTGAAGCAGATAGAACACACGCTGAATGAGAAACGCATCCTGCAGGCCGTCAGCTTCCCCTTCCTGGTGCGTTTGGAGCACTCTTTCAAGGACAACACTAACCTGTATATGGTGATGGAGTATGTCCCTGGTGGTGAGATGTTCTCACATTTAAGGAGAATTGGCAGGTTCAGTGAGCCCCACGCCCGCTTCTACGCCGCCCAAATTGTTCTGACCTTTGAATACCTTCACTCACTGGACCTCATCTACCGAGATCTGAAACCAGAGAACCTGCTCATTGATAACCAGGGATACATacagGTAACAGATTTTGGTTTTGCAAAGCGAGTGAAGGGCCGGACCTGGACGCTGTGTGGCACTCCGGAGTACCTGGCCCCTGAAATCATCCTTAGCAAAggTTATAATAAGGCGGTGGACTGGTGGGCTCTGGGCGTGCTGATTTATGAGATGGCTGCTGGCTATCCTCCCTTCTTTGCTGACCAGCCCATTCAGATCTATGAGAAGATTGTATCAGGGAAGGTGCGCTTTCCCTCCCACTTCAGCTCGGACCTGAAGGACCTGCTGAGGAACCTGCTCCAGGTGGACCTGACCAAGCGCTTTGGCAACCTGCGCAACGGAGTCAACGACATCAAGGGACACAAGTGGTTCGCCACCACTGACTGGATTGCCATTTACCAGAGGAAGGTGGAGGCACCGTTTATTCCCAAGTGCAAAGGCCCCGGTGACACCAGCAACTTTGACGACTATGAGGAAGAGGAAATCCGAGTCTCCTTCACAGAGAAATGTGGCAAGGAGTTTGCCGAGTTCTAGGCCCAACCAGGAGTAGCGGAAAGAGCCAGGGATGTAGAGAGAAAAGGCGGGAACAGAAGGAAATGGGAGGAGAGGTGATAAGCTGGACTGCTAACTTGCATTTTGTAATTACGACATCAACAATGTAACAACCCCACCCCCCAAATGAAGAGCGAGTGGAAAAAGAACGAGAGAAAAGACCTGAAAGAGCCAGCAGTGTTGCCTTTTCTGATTGTTTCTCACCTTGTTACTTATCCATGTTCTGTTTTCCCTCTTGTGTTTGTGGCGAGGGTAGAAGGGGTAGGGGCTAACCACCTCTCTCTTCAGTTGGTTTGTATCTTGGCAGAGGTGTAGCGACACATTTTGAGTCATTGCAGGCAGGTTGAGGCATTGATGTTCTGGTACTGAATCTAGGCTCCTCCTGAGTGGGTCCTCTACAAGCTTCTCAATGAATGAGGGCACCTCATTCTTGTTTTGTAATTGTCCACCCACTCCTATCTTGTTaccccaatccccccccccccccccccccccccacatctgtctctccatcctgaATCTGTCCAAGCAATACCAAGTCCAACAGACGTGCCTATCATAATGCCAACTGGTTGCAAAACCGTGTCGAAAGCATTGGTGCAGAGCTTTGGCTATTGGTGGCATCAGCCCTTGTGCCCTTTCTAGTTGAAAGCTTGACACTCTCTGCACACGCCTTCTGTCCGCTCGTTGTGGCATGATTATTGGTTTCAGGATTCTCTCATCGCTTGCAGTTCAAGCAGTGCTGACCACTTTTTGATCAGAGAAACAAtgatttctctcttttcatttagGTCTCACTACCTTTTTTTCGGGACCTGTGAAATTGTGTACATGAGCATTTCTAATGTTAATTAAGTCTGTCTTTTCCTCTTCAACTGAATTTATTAGAGCATTTTAAAACCCTTTGAGGGTCATTGTGTCCTCAAGTCAATCTGTGCTTGTGTGTTAGTGTTGAAGGGTGGGTTAAAAAGCAGTGACTAACATAATGATCACACACTCTTCTCTGACTAGTGTTTATTTAATTCATAGCACATTTATACATGTTGATATATTATAGAAAAACGTAAATATCCATCTTTTTTTTCCAAAGTTGTCTCTTAGCTGTGAAACCGAAATGAAGATTTCAGAAATAAACAAACAAGTATGAATTCTGCCAAATTCGCAAAGGTAAGGACATTGCTTACGCAGACATGTTTGTCAGTTAACTATAAAGGTGGTGGATTTTAATGCGCAGGAAAAAGTAgcaaaatgttatttttgtacaATATCACTTTTAAAAGAAAAGATGTGAAAGGAGTAAAGCTCTGGTCGTGGTGAGGTATCTGAAATGTTCAAACTGACTCTCACCTGCCCCTTTTGTATGATGGATCGAGGCCCGCTTTTTATCTGGCAGAAATCATGTCATttcattcagtgttcagttagaTGTGAACGGTTAATGCTGATTTAATCATGTTAATTCACCAGCTCTGTTCAACCTGCTGCTGGCCTGTTTACTCCTACATCCCCTGAATTCATCATCTTCAAATGGACCCTTTCACAATGTATGACTGTTGGAAGTCAGGATGTAAATGTCAAATTATTTTCCTTTTCCTCATGAGATAAAATGTATAACAATCTGATTTATGGATTTTGAAAAGCTATCCTGTGATTATTTTATTTGCAATGTCATATTTTTGGATGCAAGACAATCGCAGCCCAAATCTCACCAATGGCTGGTTTGTAGACAGAGGTGTGATGACGCAACACATTGACATGGTTTAGTTGATTGTCAACAAGACTTTGTTTTCCCACAAGCTTTTATTTTGGGGTAATAAGGTTATATTCATTTCTTATGTAGACACTAAATGTTGAGTGATTTGGACCCCCACCAGCCTTCATTAGGCACCACACCGTGTGCACCTCTCAAATGCATTTCGTGTGtttaataatatacagtatttatCCTTCAATCAGTTTTGTCATTAAGTCTATTGTAGTATGGCTTATTTCTACTGAATGTTCACATTCAAATTTTTGAAAATGATTCTTTGGCAGTCCTAGAGGTTGCATCTGAATGTCTGGAGCGGTGTGGTAAGAAGGCTACTTTACAGAAGAAAATGAACGTATCGAGTGGAGATACAGACTTCCAAACGTATGCTCTTTGAAGAAGAAATGTTACGTATGTATTATAAAAATCACGGTTCTTGCATGTGACGAAAAACAACCAATGCAAGATGTCCAGGACCTATGACATGTTTTAATGACTATTTCAGATTTGCAACCATTCATATACCACAACCAACTGATATTTTGCTTGTTTCATTGTTTTGCATCCCTCTGGTCTTTCTAAGCATCGTTAGTAGTAAGGGAGGGTCAGTACCAGCTACAGGTATCCAGTCACCTCCACTGCCTTGCTAGGACCCTTTGAAGCACACCTCACTTCTCCAATCATGTctttatttaaaatgtttttttttttaaagaaatgtgaTCATGTAAGCCTAAGTTGTGACTAGAAAGTTGGTCAATTGGTGTTCAGAAAACAATTTTTACCATTTGGTCCTGCAAACATTTACAGTTGTGCTGGAAAAGTCACTCAGTGATTAGAGGCGGGATAAGCTCCATGAACCACTGATGTGACagcttttaaaaatgtaattaggCTTTCCTAACCCATGACCTCATGTCTATGAAATGTTTGTTCCTGTTTCTACTGACCGCCTCCCACTCCCATCATTATAACCCTATCATCAGCTTTTCTGTGTTCATCTTTTCACTCTGTTTGATTGCCTTTGTTAGCGTTCTAGTTTTACATATTCTTCACATTGAActtctactttttttttttttttacatcatggAGAAAACTTTGCTTTAATTTTCATATTTTCTAAGTGTATTTTCAACAAACATTTGAATCCTTTTCCTTCCCAATTTGGGTACGGTGATGGTGTAGTCTATTGTACCCCCCCGGAAACAATACTGTATATCTGCCTTTGACAGTCTTAATTATCTTACCTTCAGGAGAACTTGACGGATACCCTTAGGACACAACAagtatgttttaaaaaaataaagtcaTATTTTGCAACATGTATCATTCCAATAAAGTTTTACTTGTTAAAATTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1350618 lncRNA upstream 45108 50613560 ~ 50614105 (+) True G1184308
TU1350612 lncRNA upstream 50696 50608091 ~ 50608517 (+) True G1184302
TU1350608 lncRNA upstream 55860 50602780 ~ 50603353 (+) True G1184298
TU1350606 lncRNA upstream 58049 50600949 ~ 50601164 (+) True G1184296
TU1350483 lncRNA upstream 240268 50417696 ~ 50418945 (+) True G1184178
TU1350639 lncRNA downstream 5933 50687723 ~ 50687995 (+) True G1184328
TU1350640 lncRNA downstream 11364 50693154 ~ 50693400 (+) True G1184329
TU1350643 lncRNA downstream 13785 50695575 ~ 50696906 (+) False G1184330
TU1350642 lncRNA downstream 14599 50696389 ~ 50696906 (+) True G1184330
TU1350636 lncRNA downstream 26083 50707873 ~ 50708719 (+) False G1184326
XM_021558517.2 mRNA upstream 317 50655021 ~ 50658896 (+) True LOC110486720
XM_021558506.2 mRNA upstream 11810 50644660 ~ 50647403 (+) True LOC110486715
XM_021558505.2 mRNA upstream 17760 50638521 ~ 50641453 (+) True LOC110486714
XM_021558503.2 mRNA upstream 28213 50625720 ~ 50631000 (+) True LOC110486712
XM_021558500.2 mRNA upstream 58781 50152380 ~ 50600432 (+) False LOC110486711
XM_021558511.2 mRNA downstream 607 50682397 ~ 50690002 (+) False LOC110486717
XM_021558510.2 mRNA downstream 608 50682398 ~ 50690002 (+) False LOC110486717
XR_005035583.1 mRNA downstream 608 50682398 ~ 50690002 (+) True LOC110486717
XM_021558518.2 mRNA downstream 17273 50699063 ~ 50704298 (+) False LOC110486721
XM_036941417.1 mRNA downstream 18122 50699912 ~ 50703928 (+) True LOC110486721
TU1350149 other upstream 775778 49882821 ~ 49883435 (+) True G1183875
TU1350070 other upstream 824199 49832221 ~ 49835014 (+) True G1183819
TU1348832 other upstream 1074651 49580326 ~ 49584562 (+) True ndua4
TU1348815 other upstream 1232990 49419570 ~ 49426223 (+) False G1182742
TU1350772 other downstream 304023 50985813 ~ 50986566 (+) True G1184435
TU1351847 other downstream 702382 51384172 ~ 51392082 (+) True LOC110487554
TU1351876 other downstream 764117 51445907 ~ 51446557 (+) True G1185436
TU1351980 other downstream 945892 51627682 ~ 51628676 (+) True G1185521
TU1351986 other downstream 969823 51651613 ~ 51653770 (+) True G1185527

Expression Profile