RNA id: XM_021558511.2


Basic Information

Item Value
RNA id XM_021558511.2
length 3032
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC110486717
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 50682397 ~ 50690002 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTTGATTCTATCTCCAGTGGGTCACCTTAAAAGCGCACAACAACGCAAGCGTACAGCGAGGTTTCAATTTTTTTCTCTAAAGCCGGACTCGGGCCGCGGATCGCAACAAGGTTGACGCACTGAGGCAAAAACGAACGAACGACCCCAACCAGGAGAATGTCTGAACCCATGTACCGCGATTGGATTTTGGACACTATTGACTCACTGCGGTCGCGAAAAGCCAGACCAGACCTTGAAAGAATTTGTCGAATGGTCCGGAGACGACATGGATCAGCGCCAGAACAAACCAGCGAGGAACTCGAGAAACTGATCCAAGAGCAAACAGTCTTGAAAGTTAACTATAAGGGCTCGATTTCCTATCGAAATGCTGCCAAAGTAGTCAGAAGAAGCAGGAAAAAGGATGATCACACGACCAAAAGAACTGCCGTGGAAGAAGCTAACCACTCTGATTTGAGCAACGGAGACAGCGCGCTCGGTCCCCTTGACCAGGATGAGACCGAGCATTTGGAGAATGAGCTGCCAGTGTCAATGGAGACAGACAGCACcatggaagaggaggaagaacagGAGGGGGCTGATGAAGATGGCCATGAgggctcctctccctctcctggggGTGAGGATGCTGTGCAGGGGAGGTCTGGTGCTGCCCCCCCCTACTCTGCCCCCTGCTCCCCCAGCGGCTCTCGCCCTGGCCACAGCCCTGTGTCTGACCGCCCCTCTACCTGCAAGACCAGTAAGAGGTCCAGCCCTCTGTCACCCTCTAGTCCCCTGGCCCTCAGGCagaatgactgtgtgtgtgactctgccTTCTGCCCTGCTGACCATGGACCCCCAGGGATGCAGAGAAACACAGGAACTGaggatggggtgagGATGGAGGAGAGTGGCCTCACTTCTGACCAACTGGTTCCTGACTGTGTGGATGAGACCATGAAGGGTTCTGACAGACAGCCTAAGACGTTGTCTTTTCCCTCTGACGACTGTGCTAAATACAAGAAGGGGATGGACGTGGCCTCTTACGTGATGTCTCAAGACGATGTCAAGAACGATGTGAAAAACAGAGAAATCTCTGTGAAGAAGGAGACGCAGAGGCAGAACCTATTGCTGTGGAGCGTGGCGGACGTGGCCACCTACATCTCTGCTGCAGGCTTTCCAGAGCAGGCTGTAGCTTTCAGAACACAGGAAATTGATGGAAAGTCCTTGCTCCTGATGCAGCGCAGTGACGTGTTAACTGGCCTTTCCATCAGACTTGGGCCCGCCCTAAAGATCTACGAGCGCCACGTGAAGATGCTGCAGAGGACCCACTTCCTGGATGAGGAGGATGATCTCTGACCATGGTTGGGGGGAACAGAACAACACACTCCTCTGAGGAGCAGATGtattcatacagtatacacacatacTGTGTTCACTGGATCTCTAGAACCTTCTGTAACCATTCAAGGAGGTGTGGGGAAAAGGACACCGTGGTCATGACTTGGGCCTTGACAGTGATTATCAACATGTGTACGTGGGCTTCCATTCCACCTCTCTGTGGTACTGCTGTCACCTGACCCATTCTGGTGGTATTGCTTTTATAGGACCCCTCTCTAAACTCATATAGGAATGTTAGGATCCTGCCTAATGACGCTATAGAAGTCAAGTGGAGGTCTGCCTATTCTGTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTGTAAGGGGTGGGTCAGTGAGTGCAGCCAGTGAGAGACTTTCTCTGGATTCCTCAGACTCTACACTTGGCTACCACTGGAGCCTCCTTTAAAAGACTGGTTTCTGTGCTCCCTGAGTCAGTTCCACAAGAAAATAATAACATGTATACTTGGAATATCTGTTCCAGCAAATATGGTTCTAGCATTTCTTCAATGTTTACTCAGACAGTATTTTTTTAAAGACATGTCATATGGTACCCTCCATTTATCTAGAAACTTAACGTTGTTTTTCTTTTATGATGACAATGTGAACTGATTTAATTTGAGAATGTACAGTATGAATTTGTTGATTCATCAAAGGTCAGTGATGTTGTCAATCTCTCATTATACCAGGAAATGGAGCTTAGTCTCCAGATGTTCTCATGGCTGCACCAGTACTGACCTAGGTTTTATTATTGTTATCTGTTTCACTAACATTTAGAAATAGCAATATGTCGTACCTGCTAAACTAAGGCAACATAATAGGTTCTTTGTATGGTTGCCTTCTGCATTCCTCTTCCCTTAATTTATGTTCACGTAATTTCTAAACATTTTAGATTAATCTAATTTCATCTACTGTGGATGAAGCTAGATTTCATCTACAAAATTAAAACAGTTTGAAGCAGAATTCTAGTTGAAATGGGCTGGCAGACCAGAACCAACGTAGCTCAAGGCCCCAATGTTTCTTCCTGCTTCAGTTTGAGGGGAGAGAAACAACTGAATTATGGTCTTTTTTTAAGGGAAAATTATCCAACCAAAAAATTAACTTCATAACTTTAGGAAGTGTCATTGTAGCACTAATATGTTTTCTTTGTTTACAACCTCAACACAGCAACACAATTCCCCACGACATGGTAGACATCTTGATCAAATTCAACATTGTTGTTATCTGAGAGGATTACAATGAGGTCTCTTAATTTTGCCTTGTGGCTTCTGCTTTTGAAACAACGTCACATTCCATATTTCCATCTGTTACGTGTTTGATGTCACACTGTTAATTGCAATGTTGGCCCTGTTTCCAGGGGGGGAAATGAAGTTATTGTCTTTTCCACTCTTGTAGTGTGATATGTATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1350618 lncRNA upstream 68292 50613560 ~ 50614105 (+) True G1184308
TU1350612 lncRNA upstream 73880 50608091 ~ 50608517 (+) True G1184302
TU1350608 lncRNA upstream 79044 50602780 ~ 50603353 (+) True G1184298
TU1350606 lncRNA upstream 81233 50600949 ~ 50601164 (+) True G1184296
TU1350483 lncRNA upstream 263452 50417696 ~ 50418945 (+) True G1184178
TU1350640 lncRNA downstream 3152 50693154 ~ 50693400 (+) True G1184329
TU1350643 lncRNA downstream 5573 50695575 ~ 50696906 (+) False G1184330
TU1350642 lncRNA downstream 6387 50696389 ~ 50696906 (+) True G1184330
TU1350636 lncRNA downstream 17871 50707873 ~ 50708719 (+) False G1184326
TU1350637 lncRNA downstream 17871 50707873 ~ 50708719 (+) True G1184326
XM_036941415.1 mRNA upstream 607 50659213 ~ 50681790 (+) False LOC110486718
XM_036941414.1 mRNA upstream 607 50666904 ~ 50681790 (+) False LOC110486718
XM_036941416.1 mRNA upstream 607 50667287 ~ 50681790 (+) True LOC110486718
XM_021558517.2 mRNA upstream 23501 50655021 ~ 50658896 (+) True LOC110486720
XM_021558506.2 mRNA upstream 34994 50644660 ~ 50647403 (+) True LOC110486715
XM_021558518.2 mRNA downstream 9061 50699063 ~ 50704298 (+) False LOC110486721
XM_036941417.1 mRNA downstream 9910 50699912 ~ 50703928 (+) True LOC110486721
XM_021558521.2 mRNA downstream 19610 50709612 ~ 50714443 (+) True LOC110486722
XM_021558522.2 mRNA downstream 25375 50715377 ~ 50719819 (+) True LOC110486723
XM_036941422.1 mRNA downstream 142802 50832804 ~ 50874844 (+) False dnm2a
TU1350149 other upstream 798962 49882821 ~ 49883435 (+) True G1183875
TU1350070 other upstream 847383 49832221 ~ 49835014 (+) True G1183819
TU1348832 other upstream 1097835 49580326 ~ 49584562 (+) True ndua4
TU1348815 other upstream 1256174 49419570 ~ 49426223 (+) False G1182742
TU1350772 other downstream 295811 50985813 ~ 50986566 (+) True G1184435
TU1351847 other downstream 694170 51384172 ~ 51392082 (+) True LOC110487554
TU1351876 other downstream 755905 51445907 ~ 51446557 (+) True G1185436
TU1351980 other downstream 937680 51627682 ~ 51628676 (+) True G1185521
TU1351986 other downstream 961611 51651613 ~ 51653770 (+) True G1185527

Expression Profile