RNA id: XM_021558516.2


Basic Information

Item Value
RNA id XM_021558516.2
length 1851
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC110486719
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 50690182 ~ 50697090 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGGGTTGTGTGTGGCTGACCAAGGTTACTGAGCTactgcagaacagagcagagcaaaTCGGTCTTCTTATATTTAGCCTTGCGACGTGCGCGCTACGGATTATGTCTTGGGCGTCTCGGGTTTCGCCTTCAGTACGTTTGTGGGTGTGGACGGGGTCCGGTAACTAGTGGGAGGCCTCTCTTCAGGTGAGGAGGTGGTAGGTTACTGACGTTTAACCCCCTCTCATTCTATGAACATCTCACaggcaacctctctctctctctttctcactttctctcccaccctcttgcTTTCTTTACCTCTTTCTCACACCCTCACACAGGAAAAGGCTGTTTATGGTGACATAGTCGTTTCCCATTCTGGAAGGCTATTTGGAGGGTACAGATAGTAAGAAAAACAGTCACAGAGGACATAGCAGTGTTAGACTACAGCTTCTAATCTGATACAAGTAGAGAACACTAACTAGGTTTTTGCAAAACATTGGAGGGACCTCATTTTAGTGCGGAGGCACATTGAGGTCGTAGTTCAAAAGGGGTCATGGATACACTGGCTTTAGAGGCGAAGGCAACTGGACAAGAAAAGAAAAGTTCAGCCCCAAGACCAAGACCTAAACCACCCAAAAAGGCCAAAAGGATTGTTTACTTTGAGGTAGAAATCGTGGATGCAAAGACAAAGGAGAAGCTACTACTCTTGGacaaaGTTGAGCCAACTTCTACTATTTTGGATATTAAGGCTTTGTTCCACAAATCAAATCCCCAGTGGTACCCAGCCAGACAGTCCTTACGCCTGGATCCTAAGGGTAAGGGTCTGAAGGATGAGGATGTCTTGCAGACACTTCCTGTTGGAACCACAGCCAGCTTCTACTTCTTTGACCTGGGGGCCCAGATCGCCTGGGGCACTGTCTTCCTATCAGAGTGTTACGGACCACTGCTCATCTACTTGATGTTCTACTTCCGCCTGCCTTTCATCTATGCCCCAAAGTATGACTTTAGCAGCAGCAAGCACTGGGTTGTACATTTGGCCTGCATGTGTCACTCCTTCCACTATGTGAAGAGAATCCTTGAGACGCTGTTCATCCACCGTATCTCCCATGGTACCATGCCACTGAGAAACATCTTCAAGAACTGCAGTTATTACTGGTGTTTCGCAGCATGGATGGCCTACTACATCAACCACCCCCTCTATACACCACCCTACTATGGGCAACAGCAAGTGAAGACAGCACTCATTATATTCTTATTCTGTCAGGTCGGCAACTTCTCCATCAACATCACTCTACGCAACCTCAAATGTCCAGGTTCGAAGGTCAAGAAGATCCCACATCCAACTAAGAATCCATTCACCTGGATCTTCGCGTTGGTGTCTTGTCCCAACTATACATACGAGCTGGGGTCGTGGATGGGCTTCACAGTGATGACCCAGTGCTTGCCGGTGGCTTTCTTCACCATCGTGGGCTTTGTCCTGATGACGGTGTGGGCCAGGGGAAAGCACCGAAACTACCGCAAGGAGTTCCGTGACTACCCCACCCTGCGCTCCCCTATACTGCCCTTCATCCTTTAGTCAGAGAGGGGCTGGTCCCACACATAACTTCACCCCTTTCAGCCCCACTGCAGTATACAGCTGGTGCTTCTGACTGGGTAGGTTGGAAGGAGTCTTTGGAATAGTTTAACTACACTGTGACTGGTTTTGGGGAGTTGAAACCCCCCTTTTGATGACTTAAATGCAGATGAGTCTTAATCTGATGTAATGTGTACAACCGGTATCTACTGTACATGTGTGGAGGCACAAATGAATGGAAAGAAATGCACTTGTTTTACTAAAGTGGTGACTTAACTGTCGACTAAACTGTT

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function

KEGG:

id description
K10258 TER, TSC13, CER10; very-long-chain enoyl-CoA reductase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1351396 lncRNA downstream 8418 50678539 ~ 50681764 (-) True G1184995
TU1351365 lncRNA downstream 81378 50608605 ~ 50608804 (-) True G1184965
TU1351364 lncRNA downstream 81859 50607969 ~ 50608323 (-) True G1184964
TU1351363 lncRNA downstream 82286 50607620 ~ 50607896 (-) True G1184963
TU1351358 lncRNA downstream 87101 50602844 ~ 50603081 (-) True G1184958
TU1351380 lncRNA upstream 6389 50703479 ~ 50703982 (-) True G1184979
TU1351379 lncRNA upstream 10777 50707867 ~ 50708718 (-) True G1184978
TU1351413 lncRNA upstream 11802 50708892 ~ 50709127 (-) True G1185012
TU1351449 lncRNA upstream 88387 50785477 ~ 50786800 (-) True G1185048
TU1351420 lncRNA upstream 92511 50789601 ~ 50824066 (-) True LOC110485208
XM_021558507.2 mRNA downstream 36898 50647434 ~ 50653284 (-) False LOC110486716
XM_021558508.2 mRNA downstream 36898 50647434 ~ 50653284 (-) True LOC110486716
XM_021558504.2 mRNA downstream 56492 50631005 ~ 50633690 (-) True LOC110486713
XM_021558491.2 mRNA downstream 559880 50127555 ~ 50130302 (-) True LOC110486707
XM_021558499.2 mRNA downstream 562981 50123190 ~ 50127201 (-) True LOC110486710
LOC118938085 mRNA upstream 22722 50719812 ~ 50730095 (-) True LOC118938085
XM_036941419.1 mRNA upstream 35007 50732097 ~ 50824433 (-) False LOC110485208
XM_036941420.1 mRNA upstream 35007 50732097 ~ 50824433 (-) False LOC110485208
XM_021558541.2 mRNA upstream 130305 50827395 ~ 50832708 (-) True LOC110486728
XR_005035584.1 mRNA upstream 170238 50867328 ~ 50868744 (-) True LOC118938315
TU1351387 other downstream 61643 50626647 ~ 50628539 (-) True G1184986
TU1350091 other downstream 853850 49835663 ~ 49836332 (-) True LOC110486698
TU1349952 other downstream 1001726 49685338 ~ 49688456 (-) True G1183706
TU1349444 other downstream 1145906 49537199 ~ 49544276 (-) True LOC118938314
TU1349434 other downstream 1186172 49486926 ~ 49504010 (-) True LOC110486687
TU1351422 other upstream 59548 50756638 ~ 50758044 (-) False LOC110485208
TU1351447 other upstream 83175 50780265 ~ 50781858 (-) True G1185046
TU1352616 other upstream 624710 51321800 ~ 51323931 (-) True G1186080
TU1352611 other upstream 655219 51352309 ~ 51373954 (-) True G1186075
TU1352690 other upstream 792687 51489777 ~ 51490241 (-) True G1186154

Expression Profile