RNA id: TU1351422


Basic Information

Item Value
RNA id TU1351422
length 866
RNA type TUCP
GC content 0.49
exon number 3
gene id LOC110485208
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 50732097 ~ 50824433 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atcactacctcaacccacctactgtctttcactatcactacctcaacccacctactgtctatctattactacctcaacccacctactgtctatcactgcctcaacccacctactgtctatctatcactacctcaatctacctactgtctatcactacctcaacccacctactgtctttcactatcactacctcaacccacctactgtctgtctatcactacctcaacacaCCTACTGTCTTTCACTATCACTGCctcaacccacctactgtctatatATTACTTCCTCAACCCACCAACTATCCatcactatcactacctcaacccacctactgtctatctatcactacctcaaaccacctactgtctatctatcactacctcaacccacctactgtctttcactatcactacctcaacccacctactgtctatctatcactacctcaacccacctacaatgtatctatcactacctcaactcacctactgtctttcactacctcaacccacctactgtctgtccatCACTAATTACACGAATATAATTCTTGCCATCTGTAGTTTGAGCAGCTGGCCTTCCTGTGGATGGAGCGCCAGAAGTCTGGGGGGAACTACAGCCGATACCGGGCCCAGACGGAGAAGCACGTGGTGCTGTGTGTCAGCTGCCTCAAGATAGACCTCCTCATGGACTTCCTCAATGAGTTCTTCGCTCACCCCAGACTGCAGGACTACTACGTGGTGATCCTGTGCCCGGCAGAGATGGATGTACAGGTACGGAGGGTCCTCCACGTGCCCCTGTGGGCACAGAGGGTCATCTACCTGCAGGGCTCTGCCCTCAAGGACCAAGACCTCATGAGGGCCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1351413 lncRNA downstream 47511 50708892 ~ 50709127 (-) True G1185012
TU1351379 lncRNA downstream 47920 50707867 ~ 50708718 (-) True G1184978
TU1351380 lncRNA downstream 52656 50703479 ~ 50703982 (-) True G1184979
TU1351411 lncRNA downstream 62609 50693822 ~ 50694029 (-) True G1185010
TU1351396 lncRNA downstream 74874 50678539 ~ 50681764 (-) True G1184995
TU1351449 lncRNA upstream 27433 50785477 ~ 50786800 (-) True G1185048
TU1351420 lncRNA upstream 31557 50789601 ~ 50824066 (-) True LOC110485208
TU1351531 lncRNA upstream 178314 50936358 ~ 50936584 (-) True G1185123
TU1351573 lncRNA upstream 232329 50990373 ~ 50991627 (-) True G1185154
TU1351544 lncRNA upstream 245447 51003491 ~ 51007735 (-) True G1185128
LOC118938085 mRNA downstream 26543 50719812 ~ 50730095 (-) True LOC118938085
XM_021558516.2 mRNA downstream 59548 50690182 ~ 50697090 (-) True LOC110486719
XM_021558507.2 mRNA downstream 103354 50647434 ~ 50653284 (-) False LOC110486716
XM_021558508.2 mRNA downstream 103354 50647434 ~ 50653284 (-) True LOC110486716
XM_021558504.2 mRNA downstream 122948 50631005 ~ 50633690 (-) True LOC110486713
XM_021558541.2 mRNA upstream 69351 50827395 ~ 50832708 (-) True LOC110486728
XR_005035584.1 mRNA upstream 109284 50867328 ~ 50868744 (-) True LOC118938315
XM_036941431.1 mRNA upstream 118471 50876515 ~ 50883694 (-) True LOC110486730
XM_036941436.1 mRNA upstream 252575 51010619 ~ 51062287 (-) False LOC110485210
XM_036941435.1 mRNA upstream 252575 51010619 ~ 51096139 (-) False LOC110485210
TU1351387 other downstream 128099 50626647 ~ 50628539 (-) True G1184986
TU1350091 other downstream 920306 49835663 ~ 49836332 (-) True LOC110486698
TU1349952 other downstream 1068182 49685338 ~ 49688456 (-) True G1183706
TU1349444 other downstream 1212362 49537199 ~ 49544276 (-) True LOC118938314
TU1349433 other downstream 1252628 49486926 ~ 49504010 (-) False LOC110486687
TU1351447 other upstream 22221 50780265 ~ 50781858 (-) True G1185046
TU1352616 other upstream 563756 51321800 ~ 51323931 (-) True G1186080
TU1352611 other upstream 594265 51352309 ~ 51373954 (-) True G1186075
TU1352690 other upstream 731733 51489777 ~ 51490241 (-) True G1186154
TU1352963 other upstream 1166919 51924963 ~ 52028974 (-) False G1186381

Expression Profile