RNA id: XM_036941425.1


Basic Information

Item Value
RNA id XM_036941425.1
length 3664
RNA type mRNA
GC content 0.53
exon number 22
gene id dnm2a
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 50832804 ~ 50876302 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGTAGCCTTATCACCGGTTAGGTCGGATGTCGACTTGCCTGACCGGATGGTGGAAGTTTTGTTTTGTGAGTTTTCTATCCGTTTCGTTGACTTTGAGTATTTTTCGTGTTTATAAGAACACCTTACTGTAATCCCACTAAATTTGAAGTTACACAATTTGTAAGCAGCATATTTTCCTTTGATAGATTGAAGACAGGGCGGCTTGAAAGGTGGAATTCAACACTTCGGAGTAACCCGAGCACCTTGCTAACTAGTAACGTTAACGTAGTAGGCTAACGTTAGTTCGGGAGGGGAGCCGATCCAACGAAACCATGGGGAACCGGGGGATGGAAGATTTGATCCCCCTTATCAACAAACTTCAGGACGCTTTCAGTTCCATCGGCCAGAGTTGTAACTTGGACCTACCTCAAATTGCTGTGGTCGGTGGGCAGAGTGCTGGAAAAAGCTCGGTCTTGGAAAATTTCGTTGGCAGggattTTCTTCCTCGAGGATCAGGCATTGTCACCCGTAGACCTCTGATCCTGCAGCTGTGCTTTAACAAAGCCGAGTATGCAGAGTTCCTACACTGTAAAGGGAGGAAGTTTGTGGACTTTGAGGAGGTCCGGGCGGAGATTGAGGCGGAGACCGACAGGATCACAGGCTCCAACAAGGGcatctcccccatccccatcaaccTCCGGGTCTACTCCCCTAACGTGTTAAACCTGACTCTGATCGACCTGCCGGGGATGACTAAGGTGGCAGTGGGGGACCAGCCGCTGGACATAGAGCACCAGATCAGGGACATGCTGCTGCAGTTCATCACCAAGGAGAGCTGCCTCATCCTGGCCGTCACCCCCGCCAACCAGGACCTGGCCAACTCCGACGCCCTCAAGATTGCCAAGGAGGTGGACCCACAGGGTCTGCGCACTATTGGCGTGATCACAAAGCTGGACCTGATGGACGAAGGGACGGATGCTAAAGACATCCTGGAGAACAAACTGCTACCTCTGCGTAGAGGTTATATCGGTGTGGTGAACCGCAGTCAGAAGGACATAGATGGCAGGAAGGACATCCGCGCTGCGCTGGCTGCTGAGAGGAAGTTCTTCCTGTCTCACCCGGGCTACAGACACATGGCCGAGCGCATGGGCACTCCACACCTGCAGAAACAACTAAACCAGcaacTGACCAACCACATCAGGGACACTCTGCCTGGGCTGCGCAGTAAGCTGCAGAGCCAGGTGCTCTCCCtggagaaagaggtggaggagtaCAAGAACTTCCGTCCCGACGACCCCACACGCAAGACCAAGGCCCTGCTGCAGATGGTGCAGCAGTTTGGGGTGGACTTTGAGAAGCGTATCGAGGGCTCTGGGGACCAGGTGGACACAGCAGAGTTGTCGGGTGGTGCCAAAATCAACCGGATCTTCCACGAGCGCTTCCCCTTTGAGCTGGTCAAGaTTGTGTTTGATGAGAAGGAGTTGAGGAGGGAGATCAGTCATGCCATCAAGAATGTCCATGGTGTCAGAACGGGCCTGTTCACCCCCGACCTGGCGTTTGAGGCCATTGTGAAAAAGCAGATCATTAAGCTGAAAGAGCCCTGTATCAAATGTATCGACCTTGTCATTCAGGAGCTCATCAACACAGTCAGGCAGTGCACCAACAAGCTGGGTTCTTACCCCCGGCTGAGAGAGGAGACCGAGAGGATCGTCACCACCtacgtcagagagagagagggcaagaccAAGGACCAGGTGATGCTGCTGATTGACATTGAGCTGTCCTACATCAACACCAACCACGAGGACTTCATAGGCTTCGCCAATCTTGACTTCAGAAGGCACGATGATGGTAGCCCACCAGGGTACGGCAACAACAGTGCCCAGCAGAGAAATATACACCAGAACAAGAAGAGGGCCATTCCAAACCAGGGTGAGATTCTGGTCATCCGCAAAGGCTGGCTCACCATCAACATCAGCATCATGAAGGGAGGCTCCAAGGAGTACTGGTTCGTCCTGACCGCAGAGTCACTATCCTGGTACAAGGATGAGGAGgagaaagagaagaagtacATGCTTCCCCTAGATAACCTCAAGCTGAGGGACGTGGAGAAAGGCTTCATGTCCACCAAACACGTATTTGGCGTCTTCAACACTGAATCCAGGAATGTGTATAAGGACCTGCGTCAGATTGAGCTGGCCTGTGACACCCAGGAGGACGTGGACAGTTGGAAAGCCTCTTTCCTGAGGGCTGGGGTCTACCCTGAGAAGGACCAGGTGGACACTGAGGATACGGCCCCGTCAGAAACCTTCTCCATGGACCCCCAGCTGGAGAGGCAGGTGGAGACCATCCGTAACCTGGTGGACTCCTACATCGGCATCGTCAACAAGTCCATCAGGGACCTCATGCCCAAGACCATCATGCACCTCATGATCAACAGCgcTAAGGACTTCATCCACTCAGAGCTGCTGGCCTACCTGTACTCGTCAGGTGACCAAAACAGCCTGATGGAGGAGTCAGCTGACCAGGCGCAGCGCCGCGACGAGATGCTCCGCATGTACCACGCCCTCAAGGAGGCACTGCACATCATCGgtgacatcaccaccaccaccgtgACGGTTCCCGTGCCACCGCCCGTCAACGACAGCTGGATGCAGGAAGCcagTCCTACCCCCCAGCGCCGCCCCCCGGCCGCAGCAGCCCCTCCCCCAAGCCGTCCTCCTGCAGTGAGTGGCCCAAGGCCGGGAccacccctcaacccctccccagCGTTTGGGGGGCCCCCCATCCCTTCTCGCCCGGGCCCGGCGCCCATTAACGCCTTTGGCAGCAACAACCATCAGGACCCTTTCAGTGCCCCCCCACTGATCCCCTCTCGGCCCGCTCGCATCCCCCCTGGCGTGCCCAGGCGGCCTGCTCCTGCTCGTCGTAACCAGTGGTGACCTTGCCCCAAAGCAGGATAGGATTGGAGATGCACTGTCCACAAACCAGCAAGAGAACCAGACCTGTGAAGAATCATAAACCTTGAACACCTTAACCTTAAATATTCTCCAAAGAATAGGTTTCGGAGCTGATTAAACTCTAAAAGCCATAACTTAGTTTATAACATGAAATACACGAGTTTTTCAATGGCAACTGTCAAACGTACTCGTTTTACAATAACTGACGGCATTTCAGGAAAATCAGcctccttttaaaaaaaaataaatcctaAAGTGAAATGCGATCTCATTGCATAAGCTGCAATAAAATACGGAGAGAACTGTCACGTGGTAAAGAAGACAACTTTACCCTCACTCACTATCTCATTAAAactgttaaaggcccagtgcagtcaaaagtgtaatatttatatgctttatatattgttccacactatgaggttgaaataataCTGTGACAATTATAATAATGCACTTTTAAGTGTAAGGGCGGTTTGAAAAAACACCTGAAatatcagcctgttttggtggggtgGAGTTTTAGCCTGCCTGTTGTCATCACCAGGCTGTATATTAGTTCATCCACCAGTAAGAAAGAGACTTCCAaacctttctgccaataacagctagttatCAGTTTCCCCTCCccgctcagaccactcccagtTTCCCCTCCCCGCTCAGACCACACCCAGTTTCCCCTTCccgctcagaccactcccagtTTCCCCTCCccgctcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1350687 lncRNA upstream 45743 50782955 ~ 50787112 (+) True G1184367
TU1350690 lncRNA upstream 45765 50785525 ~ 50787090 (+) True G1184369
TU1350689 lncRNA upstream 46447 50785343 ~ 50786408 (+) True G1184368
TU1350686 lncRNA upstream 46831 50778836 ~ 50786024 (+) False G1184367
TU1350683 lncRNA upstream 57870 50769244 ~ 50774985 (+) True G1184364
TU1350764 lncRNA downstream 49489 50925791 ~ 50926011 (+) True G1184427
TU1350778 lncRNA downstream 68619 50944921 ~ 50946135 (+) True G1184441
TU1350783 lncRNA downstream 127215 51003517 ~ 51007979 (+) False G1184443
TU1350785 lncRNA downstream 127215 51003517 ~ 51007979 (+) False G1184443
TU1350786 lncRNA downstream 127215 51003517 ~ 51007979 (+) False G1184443
XM_021558522.2 mRNA upstream 113036 50715377 ~ 50719819 (+) True LOC110486723
XM_021558521.2 mRNA upstream 118412 50709612 ~ 50714443 (+) True LOC110486722
XM_021558518.2 mRNA upstream 128557 50699063 ~ 50704298 (+) False LOC110486721
XM_036941417.1 mRNA upstream 128927 50699912 ~ 50703928 (+) True LOC110486721
XR_005035583.1 mRNA upstream 142853 50682398 ~ 50690002 (+) True LOC110486717
XM_021558543.2 mRNA downstream 9427 50885729 ~ 50894479 (+) True LOC110486729
XM_036941432.1 mRNA downstream 63272 50939574 ~ 50965217 (+) True LOC110485209
XR_002468101.2 mRNA downstream 115192 50991494 ~ 50992842 (+) True LOC110486733
XM_036941440.1 mRNA downstream 468076 51344378 ~ 51373991 (+) False LOC110486735
XM_021558558.2 mRNA downstream 475896 51352198 ~ 51373991 (+) False LOC110486735
TU1350149 other upstream 949420 49882821 ~ 49883435 (+) True G1183875
TU1350070 other upstream 997841 49832221 ~ 49835014 (+) True G1183819
TU1348832 other upstream 1248293 49580326 ~ 49584562 (+) True ndua4
TU1348815 other upstream 1406632 49419570 ~ 49426223 (+) False G1182742
TU1350772 other downstream 109511 50985813 ~ 50986566 (+) True G1184435
TU1351847 other downstream 507870 51384172 ~ 51392082 (+) True LOC110487554
TU1351876 other downstream 569605 51445907 ~ 51446557 (+) True G1185436
TU1351980 other downstream 751380 51627682 ~ 51628676 (+) True G1185521
TU1351986 other downstream 775311 51651613 ~ 51653770 (+) True G1185527

Expression Profile