RNA id: XM_036941428.1


Basic Information

Item Value
RNA id XM_036941428.1
length 5465
RNA type mRNA
GC content 0.50
exon number 20
gene id dnm2a
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 50832804 ~ 50876302 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTAGCCTTATCACCGGTTAGGTCGGATGTCGACTTGCCTGACCGGATGGTGGAAGTTTTGTTTTGTGAGTTTTCTATCCGTTTCGTTGACTTTGAGTATTTTTCGTGTTTATAAGAACACCTTACTGTAATCCCACTAAATTTGAAGTTACACAATTTGTAAGCAGCATATTTTCCTTTGATAGATTGAAGACAGGGCGGCTTGAAAGGTGGAATTCAACACTTCGGAGTAACCCGAGCACCTTGCTAACTAGTAACGTTAACGTAGTAGGCTAACGTTAGTTCGGGAGGGGAGCCGATCCAACGAAACCATGGGGAACCGGGGGATGGAAGATTTGATCCCCCTTATCAACAAACTTCAGGACGCTTTCAGTTCCATCGGCCAGAGTTGTAACTTGGACCTACCTCAAATTGCTGTGGTCGGTGGGCAGAGTGCTGGAAAAAGCTCGGTCTTGGAAAATTTCGTTGGCAGggattTTCTTCCTCGAGGATCAGGCATTGTCACCCGTAGACCTCTGATCCTGCAGCTGTGCTTTAACAAAGCCGAGTATGCAGAGTTCCTACACTGTAAAGGGAGGAAGTTTGTGGACTTTGAGGAGGTCCGGGCGGAGATTGAGGCGGAGACCGACAGGATCACAGGCTCCAACAAGGGcatctcccccatccccatcaaccTCCGGGTCTACTCCCCTAACGTGTTAAACCTGACTCTGATCGACCTGCCGGGGATGACTAAGGTGGCAGTGGGGGACCAGCCGCTGGACATAGAGCACCAGATCAGGGACATGCTGCTGCAGTTCATCACCAAGGAGAGCTGCCTCATCCTGGCCGTCACCCCCGCCAACCAGGACCTGGCCAACTCCGACGCCCTCAAGATTGCCAAGGAGGTGGACCCACAGGGTCTGCGCACTATTGGCGTGATCACAAAGCTGGACCTGATGGACGAAGGGACGGATGCTAAAGACATCCTGGAGAACAAACTGCTACCTCTGCGTAGAGGTTATATCGGTGTGGTGAACCGCAGTCAGAAGGACATAGATGGCAGGAAGGACATCCGCGCTGCGCTGGCTGCTGAGAGGAAGTTCTTCCTGTCTCACCCGGGCTACAGACACATGGCCGAGCGCATGGGCACTCCACACCTGCAGAAACAACTAAACCAGcaacTGACCAACCACATCAGGGACACTCTGCCTGGGCTGCGCAGTAAGCTGCAGAGCCAGGTGCTCTCCCtggagaaagaggtggaggagtaCAAGAACTTCCGTCCCGACGACCCCACACGCAAGACCAAGGCCCTGCTGCAGATGGTGCAGCAGTTTGGGGTGGACTTTGAGAAGCGTATCGAGGGCTCTGGGGACCAGGTGGACACAGCAGAGTTGTCGGGTGGTGCCAAAATCAACCGGATCTTCCACGAGCGCTTCCCCTTTGAGCTGGTCAAGaTTGTGTTTGATGAGAAGGAGTTGAGGAGGGAGATCAGTCATGCCATCAAGAATGTCCATGGTGTCAGAACGGGCCTGTTCACCCCCGACCTGGCGTTTGAGGCCATTGTGAAAAAGCAGATCATTAAGCTGAAAGAGCCCTGTATCAAATGTATCGACCTTGTCATTCAGGAGCTCATCAACACAGTCAGGCAGTGCACCAACAAGCTGGGTTCTTACCCCCGGCTGAGAGAGGAGACCGAGAGGATCGTCACCACCtacgtcagagagagagagggcaagaccAAGGACCAGGTGATGCTGCTGATTGACATTGAGCTGTCCTACATCAACACCAACCACGAGGACTTCATAGGCTTCGCCAATGCCCAGCAGAGAAATATACACCAGAACAAGAAGAGGGCCATTCCAAACCAGGTCATCCGCAAAGGCTGGCTCACCATCAACATCAGCATCATGAAGGGAGGCTCCAAGGAGTACTGGTTCGTCCTGACCGCAGAGTCACTATCCTGGTACAAGGATGAGGAGgagaaagagaagaagtacATGCTTCCCCTAGATAACCTCAAGCTGAGGGACGTGGAGAAAGGCTTCATGTCCACCAAACACGTATTTGGCGTCTTCAACACTGAATCCAGGAATGTGTATAAGGACCTGCGTCAGATTGAGCTGGCCTGTGACACCCAGGAGGACGTGGACAGTTGGAAAGCCTCTTTCCTGAGGGCTGGGGTCTACCCTGAGAAGGACCAGGTGGACACTGAGGATACGGCCCCGTCAGAAACCTTCTCCATGGACCCCCAGCTGGAGAGGCAGGTGGAGACCATCCGTAACCTGGTGGACTCCTACATCGGCATCGTCAACAAGTCCATCAGGGACCTCATGCCCAAGACCATCATGCACCTCATGATCAACAGCgcTAAGGACTTCATCCACTCAGAGCTGCTGGCCTACCTGTACTCGTCAGGTGACCAAAACAGCCTGATGGAGGAGTCAGCTGACCAGGCGCAGCGCCGCGACGAGATGCTCCGCATGTACCACGCCCTCAAGGAGGCACTGCACATCATCGgtgacatcaccaccaccaccgtgACGGTTCCCGTGCCACCGCCCGTCAACGACAGCTGGATGCAGGAAGCcagTCCTACCCCCCAGCGCCGCCCCCCGGCCGCAGCAGCCCCTCCCCCAAGCCGTCCTCCTGCAGTGAGTGGCCCAAGGCCGGGAccacccctcaacccctccccagCGTTTGGGGGGCCCCCCATCCCTTCTCGCCCGGGCCCGGCGCCCATTAACGCCTTTGGCAGCAACAACCATCAGGACCCTTTCAGTGCCCCCCCACTGATCCCCTCTCGGCCCGCTCGCATCCCCCCTGGCGTGCCCAGccgAAGACCCCCTGGCGCCCCTCACCGGCCCACCATAATCCGCCCTGCCGAGCCCTCCCTGCTAGACTAGACTACCCAGTAGAACCAGCCAggctcacctgtgtgtgtgtgagactatgTGTGTACTGAGGccagaggggagggatagagagcaggggaggaggggGCCCCTATACAGTATCTATGCACATTGATATATTCTATTTCAACCAGACTTATCTAATGTAGTCGACTCAAACTGTTCTCTGATATAAGCTGCTAACCCTCCCTTAGTCTCCTACACATGTGGGCTCTCTGGTCTCCACATTCTAAAGAAGCAAAGGAACCATAACCACTTGACTCCTCAGAATCAGAAGAGATGTAATTACACTGTTTTGGATATCATACCATATGTATCAAAAGATTCATCAAGACTTAATCGCTCACCTTTGACCAGCAGGGTGCAGTCACGGCATCAGATGTGGATGGTTACATGGAAGTGACATGACCCTAAGCGACCTATTTTCTGTGGTAACAGAATCGTTAATTTCCTCTCTGAAAATGTGGACGACAGCATAGTCCACAACCTTTCTAAACGTAAAACGCTagctaccctccctccctccatctttagaCGTGTCCTCACCTCGTGCTCTACTACACCCGACACCTCTGTGTAATATACACAGACATCCTGTTCATTTTTTTTGGGTTTTTCTAATTTGATTTCATACTGGAAAATAGTTATTGTTATTACGACTACGGTGGTGTTGATTTTATTTGAGTGACTTGTCTGTTTTAATGCCCCCTCTATGTAGCTTTAAAACCAGTCTCAAATCACAGCAAAAGGAGGCATAAAAAGACAATTTAGCAGTGCAGGGCTACACATGAGGCTGAGAGCAGCCTTCTAAAATGGGCCTGTTATTATTGGAATGTCCTGCCACCGCTGAGAAAATGTCATCTAGATTGACCACTTGAAGCACTTCTGTGTACATCCATACATCCAGTGGTAGTGTTGAGGTTGTCATTAATTTAAGACTATGcacaataaacagagagagagttgtcAGCACTTTGAGATGATTTCTCCACACATCTTTTAAGTATAGAGTTATCCCAGCACCTTAAGTCAATCTCACTGAGGCCTTAGCCAACCTTCATTCAAAGTCCCATTCAGGACAAGGACCGGTAAAGGGGAGAGTACAGTAGGTTCTCCTGGAGAAGGGTGAGAAGGTGGGGAGGCGGGAAAGGGAAGGGGGAGCTATGTGGTTAGAGCTGGAGAGACGGCGGTTTAGGACCGACACTTCTTCCTGTCACAATTCAATGGTAATTTGTCTTTATGGACGAGAGATCCTCCCGGTGTCTTGGAAACACCGTTGTACATAGCTGATGGACAGTCTCAgtccagacacacagagatggtGATGTCTCCAGTTTTAAAAAGAATGGATGGAGAATGATGTTTAATGGTGTTCATTGAAAACCAAACATTTTAATGTGTAGTAATCGTTATACTAATTGAAGCACTAACACACAGCCGTTATATTGACTTCGCTTGGGATGTAGGGAAATGTTGAGATTTAATCTCCAGATCGCATTAATTCATTATTTATAACCCTGGGCATTTGTCATGTATTGTTTTGATAGAAATGATGTCAGCTGTATACTGCACCTTCAGCCTACTACTACTCCTCCGGAAGGGAGACTGAATGTCTTTCTGGTAGCGACTTCCACTACAGGGTTCTAGTTGGAATAACTGTTGCCACTGGGAGGGTTTAAATAGGAGTGAAGAGTGTCTCTTCACAGATGGGATTTTCTACTGATGAATATCATTTGATTCTTCTGATGGTAATTTGATCATACTGGGggaattttgggggggggggggttggagggtGAGTGACAAATGGACTACGTTGATGTTTTGATTTGGTGATTAAATATTGAGGGTGAGCAGGGGGCGGGAGTTCAACTTTTGTTGCTTTTTCTGGTGTACATATACATCCTGCCTGGAGAACCTGTCCAAACTATATAGAGCTCAGTCCAATACCTTGTACACAGATTGTGGTACAGGTCGAGGGTGAATTTGGTAGGAACAGTCTAAAACCATATTTTCTGGGCTTTTCTTCCCATACATTTCCCATCAGGTCTGTCTACAGTGACCGTGCTGCTAGTGGGTGTCTGACTCTGATCTCAGCTAACTCCAACTAAAGCCTCTGGGAAATGGAGTCTATCCATGCTCCAAAAGGTTTCAATATCTTGACCAAGTATTGAACCCCTACTAGGAAGAGATTTGGCCTTACATTTATGCTGTCACTCTCTGATGTTGAGTCTTAAGGGAATCGAAAACGTCCCCTCCTTATGAAAGTGTCCCTGTCACCTGACGGTACCGGTCACTGTAgcctgtccccctacaccccaTCTCCTGATCTGTAAAGTGTAAGATGTTGGTGACGACCTTTTCTCCATAATGGatgcccccccccacactctccaTGCTCTGTATCTTTCATCTTGTGGGTGGGGGGAACTGACCTGCGTCAATCTTTCTTTAGTTTTTGCAAAGCCTTGTCAAGTGCCTCTAGTAATTTCCTGGATTTGAATAAACAAATGAACCCATTTGGAACATGAGCGCTAAATAAAGAGGTGTTGTGTACAATAAAGA

Function

GO: NA

KEGG:

id description
K23484 DNM2; dynamin 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1350687 lncRNA upstream 45744 50782955 ~ 50787112 (+) True G1184367
TU1350690 lncRNA upstream 45766 50785525 ~ 50787090 (+) True G1184369
TU1350689 lncRNA upstream 46448 50785343 ~ 50786408 (+) True G1184368
TU1350686 lncRNA upstream 46832 50778836 ~ 50786024 (+) False G1184367
TU1350683 lncRNA upstream 57871 50769244 ~ 50774985 (+) True G1184364
TU1350764 lncRNA downstream 50945 50925791 ~ 50926011 (+) True G1184427
TU1350778 lncRNA downstream 70075 50944921 ~ 50946135 (+) True G1184441
TU1350783 lncRNA downstream 128671 51003517 ~ 51007979 (+) False G1184443
TU1350785 lncRNA downstream 128671 51003517 ~ 51007979 (+) False G1184443
TU1350786 lncRNA downstream 128671 51003517 ~ 51007979 (+) False G1184443
XM_021558522.2 mRNA upstream 113037 50715377 ~ 50719819 (+) True LOC110486723
XM_021558521.2 mRNA upstream 118413 50709612 ~ 50714443 (+) True LOC110486722
XM_021558518.2 mRNA upstream 128558 50699063 ~ 50704298 (+) False LOC110486721
XM_036941417.1 mRNA upstream 128928 50699912 ~ 50703928 (+) True LOC110486721
XR_005035583.1 mRNA upstream 142854 50682398 ~ 50690002 (+) True LOC110486717
XM_021558543.2 mRNA downstream 10883 50885729 ~ 50894479 (+) True LOC110486729
XM_036941432.1 mRNA downstream 64728 50939574 ~ 50965217 (+) True LOC110485209
XR_002468101.2 mRNA downstream 116648 50991494 ~ 50992842 (+) True LOC110486733
XM_036941440.1 mRNA downstream 469532 51344378 ~ 51373991 (+) False LOC110486735
XM_021558558.2 mRNA downstream 477352 51352198 ~ 51373991 (+) False LOC110486735
TU1350149 other upstream 949421 49882821 ~ 49883435 (+) True G1183875
TU1350070 other upstream 997842 49832221 ~ 49835014 (+) True G1183819
TU1348832 other upstream 1248294 49580326 ~ 49584562 (+) True ndua4
TU1348815 other upstream 1406633 49419570 ~ 49426223 (+) False G1182742
TU1350772 other downstream 110967 50985813 ~ 50986566 (+) True G1184435
TU1351847 other downstream 509326 51384172 ~ 51392082 (+) True LOC110487554
TU1351876 other downstream 571061 51445907 ~ 51446557 (+) True G1185436
TU1351980 other downstream 752836 51627682 ~ 51628676 (+) True G1185521
TU1351986 other downstream 776767 51651613 ~ 51653770 (+) True G1185527

Expression Profile