RNA id: XM_036941435.1


Basic Information

Item Value
RNA id XM_036941435.1
length 6179
RNA type mRNA
GC content 0.55
exon number 24
gene id LOC110485210
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51010619 ~ 51230197 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAGTCGCTAACTGTCAGAGAACTTGAACTTCAGCTTTAGTGGCAAGCATCTTCACGTCACTACGCCGACCATGCAAACTAGTCTACGCTACACTAGTCCGCCTAAAAGCTAGTTAGCTTTCTGCTTACCAGCTCGAACAAAAACGCAAGGATGGTAGATTGTTTTGCTCCAGGCTGCAACCATATCTCCTCAGCGGGAAGGTGCTCATTTTATCAGTTCCCCAACGATGTCTAGAGGAGACTTTGGGTCCGTCTGATAAGcTCTGAGTCGGTCAGCGATGCCCTTCGGCCTGATGCGTAGAGAGCTGGCGTGCGAGGGATACCCCATCGAGCTGCGCTGCCCTGGCAGTGATGTCATCATGATTGAGACAGCCAATTACGGCCGCACGGACGACAAGATCTGTGACGCTGACCCCTTCCAAATGGAGAACGTGCAGTGTTACCTGCCTGACGCCTTCAAGATCATGTCACAGAGATGTAATAACCGTACCCAGTGTGTGGTGGTGGCAGGGTCCGATGTGTTCCCAGACCCCTGCCCAGGGACCTACAAGTACCTGGAGATACAGTACGAGTGTGTCCCCTACATCTTTGTGTGTCCGGGCACACTGCTGCGTGTACAGGCGGCCAGCTCGCTGCAGGAGGCAGAGCATCAGTCGGGGGCGTGGTGTAAGGACCCCCTGCAGTCAGGTGACCGGCTCTATGTCATGCCTTGGACTCCCTACCGCACCGACATGCTGTATGAGTACGCTTCCTGGGAGGACTTCAGACAGAACCGCGCCACCACCACCTACAAGTTGCCGAACCGTGTTGATGGCACAGGCTTCGTGGTATACGATGGCGCCGTGTTCTACAATAAGGAGCGCACACGCAACATGGTCAAGTATGACCTGCGCACACGCATCAAGAGCGGCGAGGCCATTATCGCCAACGCCAACTACCACGACACATCGCCCTACCGCTGGGGTGGGAAGAGCGATATCGACCTGGCAGTGGACGAGAACGGGCTGTGGGTCATCTACGCCACAGAGTCCAACAATGGACGACTGGTGGTCAGCcagGTGAACCCGTACACCCTGCGCTTCGAGGGCACCTGGGAGACCAGCTTCGACAAGAGGCTGGCGTCCAACGCCTTCATGGCGTGCGGCGTGCTCTACGCCGTGCGCAGTGTCTATCAGGACGACGACAGCGAGGCCGGCGGGGATCTGATCCTTTACGCCTACAACACGAACCGTGCCCGGGAGGAGCCCGTCCACATCCCCTTCCCTAACCCCTACCAGTACGTCTCCTCTGTGGACTATAACCCCAGAGACAACCAGCTCTACATCTGGAACAACTATAATGTTCTGAGATACCCGCTGGAGTTCGGACCACCGGACCCCACCACTGgcccTCTGACGACCACTCAGGTGACCAGCACCACGCCAGCCCGACCTTTCACCTCCAGTTCTAGCCCTGCTACCACCCGCCCCCTGGCCCCCACCTCTCACCCCATTGGCGCTATCAACAAGGGCCCTGACCTGCGGCCAATCACAGCCACCGTACCAGTCACCAGGCGGCCTCCCCGCCCACCCGTCCAGGGCCCGGAGCCCCAGGTGTGTGAGTCCAGAGTGGCCAGAGGGGTGCAGTGGCCCTccacccagagaggagagactgtgGACCGCCCCTGTCCTAAAGGATCACTAGGCATCGCCTCGTTCCAGTGCTTGGCGGCTCCGGTCATGTGGAACCCTCGGGGCCCTGACCTCAGTAACTGCACCTCTCCCTGGGTCAACCAGGTAGCCCAGAAGatAAAGAGTGGTGAGAATGCTGCCAACATAGCTGGGGAGTTGGTGAACCACACACGGGGGCGGATCCACGCTGGTGATGTCAGCTCGTCAGTGCGTCTGATGGAACAGCTGCTGGACATACTGGATGCCCAGCTTCAGGCCCTGCGGCCCGGCAACAAGGAGTCAGCCGCACGCAACTACAACAAGctccagaagagagagaggacctgTCGGGCTTACATCCAGGCGGTAGTGCAGACAGTGGACAACCTGCTGCGTACAGAGGCTCTGGAGTCGTGGCAGGACATGAACACTACGGAGCAGGCCCACACCGCCACCATGCTATTGGACGTCCTGGAGAAAGGAGCCTTCCTATTGGCCAACAACATGTACGGCAACCGCTTCACCGACCGGGCCCCCAATATTGATCTGGAGGTGCACGTGTTGAACACAGAAATGGACCTTCAGGACCTGTCCTTTCCTCAGAACTACGTGAGCGACAGCACCATCCAGCTCTCCGCCTCCACCATCAAACAGTACAGCCGCAATGgcCAAGTCAAGGTAGTGTTTGTTCTTTATAAGAACTTGGGCTCCTTCCTGTCTACGGAGAACGCCACGGTGAAGATGGAGCTGGAGGCGGCACCGGGGGAGCGGGGATTGGCGGTCAACTCCCACGTCATCGCCGCCTCCATCAATAAAGAGTCCAGCAGAGTGTTCCTCACTGAGCCGGTGGTGTTCACACTCAAACACTTACAGtTGGAGAACCACTACAGTCCCAACTGTTCGTTCTGGAATTACTCTGAGCGGTCGATGACAGGCCAGTGGTCGTCTCAGGGCTGTAGACTGCTGGACACCAACAGCACACACACCACCTGCTCCTGTTCCCACCTCACCAACTTTGCTGTGCTCATGGCCCACCACCAGCCTGATtACCCTGGGAGGATGCACGAGTTGATCCTGTTTGTGATCACCTGGGTGGGCATAGTGATCAGCCTGGTGTGCCTGGCTATCTGCATCTCTACCTTTTGCTTCCTGAGGGGCCTGCAGACCGACCGCAACACCATCCACAAGAACCTCTGCATCAACCTCTTCATCGCAGAGCTCCTCTTCCTTATCGGAATCGACAAGACCCAGTACCACatTGCCTGTCCGATCTTTGCTGGGCTGCTTCACTTCTTCTTCCTGGCTGCATTCTCCTGGATGTGTCTGGAGGGGGTGCAGCTCTATCTGTTGCTGGTGGAGGTGTTTGAGAGCGAGTACTCCCGCAAGAAGTACTACTACCTGTGTGGCTACTGCTTCCCAGCTCTGGTGGTGGGCATCTCGGCAGCCATAGACTACCGGAGCTATGGGACCAAGAAAGCGTGCTGGTTGCGGGTGGATAACTACTTCATCTGGAGCTTCATTGGCCCTGTTTCTTTTGTTATTATGCTGAACCTGGTGTTCCTCATGATCACCGTGCACAAGATGACCCGCAACTCCTCTGCCCTAAAACCTGACTCCAGTCGCCTCGACAACATCAAGTCATGGGCTATTGGGGCCATCGCCCTGCTCTTCCTGCTTGGCCTGACCTGGTCCTTCGGCCTCCTCTTCATCAACGAGAACACAGTTATCATGGCTTACCTCTTCACCACCTTCAACGCCTTCCAGGGCATGTTCATCTTCATCTTCCACTGCGCTCTGCAGAAAAAGGTGCATAAGGAGTACAGTAAGTGTCTGCGTCACTCGTACTGCTGCAGCCGTTCCTCCACCACCAGCTCCCACGGCTCCCTGAAGAACTCTGCCCTGCGTGCCAACAACCGCTACTACACTGGCAACCAGGCCCGCCACGCTGCCGCACACAGACAGAGTCGGATCCGCAGGATGTGGAACGACACGGTTCGGAAGCAGACGGAATCTTCCTTCATGGCGGGAGACATCAACAGTACTCCTTCACTCAACCGTGCCACCATGGGAAACCACCTCCTGACCAACCCAGTGTTACAGACCCGTACTGGCACCTCTCCCTACAACACCCTACTAGCTGAGAGCTTCACTCCCCCTTCTCCTGGGGTCTTCAACTCCACCGGAACCTTCCGTGACCCAAaGAACACTTTGTGTAAGGCCCGTGATCCATGTGGTATGGACACCCTGCCCCTCAATGGTAACTTCAACAACAGCTACTCCCTCCGCAGCGTGGGGCCGGTGGGCGGTGGCGGGGGCAGCTGTGACTTCCTGGGCGGGGGCATGGGGTGTGCAGacgccccccctcccctcctcaaccCCCGCGGGTCTGAAACCCTGGGCGGGGACGGAATACGGCGCAACCTGTCTGACGCAGCTGCCTTCGAGAAGATGATCATCTCTGAGCTGGTGCACAACAACCTGCGTGGGGCAGGAGCTGGGGGCGGGGATAGGGTATGTGGTAGTCTGGCGAGGGGCCCTCCTCATGGCGGAGTAGGCCGAGGCACGGGAGTAGCTGTGCCAGAGCCGAGCATCAGCCTGGACGACGATGAGGACTTCCTGTCCAGAGAAGGCGGGCGCCAGAGGACGCCGCAGGACGTAGAGCTGCTCTACAAAGCCCTGGAGGAGCCGCTGCTGTTGCAGAGAGCCCAGTCTGTCCTTTACCAGTCTGACCCCGAGGAGTCAGAGAGCTACACGGCCGACCTTACAGAGAGCCTGGGCCACAGTGGCCACAGTGGGCACAGCGCCGGAGGCCAGGGGTCTGGGGGACAGGGCCCTGACTCTCCCGCCAGGGACTCCCTGTACACCAGCATCACCAACCTGCGAGACTCGCCCTACCCGGACAGTAGCCCCGAGCCCCTGGAGGTGGTGCCCCGCTCGGCCCAGCCCCCTGAGGAGCTCTATTACAGCTCTGGGAGGCCCGCCCTGGGGTCTCGAGGAGCACCCATGCAGACCTTCTACCAGGCCCCGCCCCCCAGGAGGcccagtagggagggggaggggcacCCCGGCCAGGAGCCCACCCACAGCGAGGGAGACGGACAGATGCAGCTGGTCACCAGCCTGTGACTGGAACCGGGAGGATGCGGACGGGGACCAagatgatgaggatgaggatgaaggCTGGCTGGTTGCCTCCTCAGAacccgcctctctctctttctctcgctcctctccACTTCCTGCTTGATTGGTTGCCTTTTTTTCCCTCTTTATTTGTATTGAAAGATGAGCGAGCAAATGTACATTTAAGGAGAGTTTTAGCTGTCTCCACGGCAACAGTCTTATCCTAGAGAACCTCCGCTGTCTGGTGGAGTGATGGCTGAGTTGTTCTTCTCTGGAACATTCacccgctctctccttctctcttttcaaCATCCCCCTTTCTCTTGGCACGCAGCAGACAGATGCCAAGTCCAGCACTCTGAATGTACCAATCCAACAAGCCCCTTATACCTTACTCCTACAGAGCTACAGATATTTCTCAACTTAACTTTGTTCAAAGTCCATTTTATTTAATTTCACTGAATTTCTACAAACATTCCTCTCGAGAAATTGGTCTCATTTTCTAGTTCCCTTTTCTCTTTCCCTTTTTCATGTTCCATCTCTCTTTTTGTTCACTCATCATTTGCTCGGCGTAGTTAGCTGTGGAGACAGGGGATATACTGTAGTAGCCTATTATACCGTAGGAAAAAAATCTCTGAAAGCTACTTCAGTGTTGccaaaaatacattttcccaGCCAGAACAGAAACTGGAGCattcgcacacacacagacatacacacacacgctcactcactcacagaaGTGCTTGTTTCTGAACATCAGACACAACCCTCCATCTGAGTAAAAAGAAGCCAGAACAATTGTTCAGACAAAGGCAGTTGGAACTGTCTAAGAGTAGTTGCCTTTATTTTATCTTGCTATGAACTGACTCTTATGTACAGAactagaggagagactgaggaagTAGGAAGTACACCACAGGACAGGAAGGCTATTTGAGGGGTCAAGGGTCAGGGGTCAAGAGGTAGATCTTTAGGACTCGAGGAACGGACAATGACTTTTTTTTTATTTGGgcttttttgttattttcttcAGACATTTGAAAAGTAAAAGACTGCTTTACTAACTTTGAAGAAGAATATGTTATCTTGGTGACTTTCTGTTGCATCACCCGGAGGGTTAAAGGGGCAGATTGTGCACCCTTTAAGAATGGATGCCCTCTTCAATGGATGTGTCCACGTCACCTATGTGTGGTTGTGACAGAATGGACTCTAAATGTTGGAAGCATTTCAGCCGTTACGCAAGTCTAACCCTGTACATATGAACCACACAAACTACAGTACTTACTCTACTCCTACCGTGTAAATACAGAAACCAGATgaagaaaagcaacaaaaaagTAAGAAATACTAAAAACAGACTTCTTGTActgcaacaaaacaacaaaagaaaaaaagaaaatgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1351544 lncRNA downstream 2884 51003491 ~ 51007735 (-) True G1185128
TU1351573 lncRNA downstream 18992 50990373 ~ 50991627 (-) True G1185154
TU1351531 lncRNA downstream 74035 50936358 ~ 50936584 (-) True G1185123
TU1351420 lncRNA downstream 186553 50789601 ~ 50824066 (-) True LOC110485208
TU1351449 lncRNA downstream 223819 50785477 ~ 50786800 (-) True G1185048
TU1351684 lncRNA upstream 76909 51173048 ~ 51173497 (-) True G1185256
TU1351688 lncRNA upstream 84667 51180806 ~ 51185965 (-) True G1185260
TU1351689 lncRNA upstream 85319 51181458 ~ 51188001 (-) True G1185261
TU1351730 lncRNA upstream 147684 51243823 ~ 51244071 (-) True G1185300
TU1351732 lncRNA upstream 148106 51244245 ~ 51244719 (-) True G1185302
XM_036941431.1 mRNA downstream 126925 50876515 ~ 50883694 (-) True LOC110486730
XR_005035584.1 mRNA downstream 141875 50867328 ~ 50868744 (-) True LOC118938315
XM_021558541.2 mRNA downstream 177911 50827395 ~ 50832708 (-) True LOC110486728
XM_036941419.1 mRNA downstream 186186 50732097 ~ 50824433 (-) False LOC110485208
XM_021558557.2 mRNA upstream 228767 51324906 ~ 51328763 (-) False LOC110486734
XM_036941437.1 mRNA upstream 228767 51324906 ~ 51328763 (-) False LOC110486734
XM_036941438.1 mRNA upstream 228767 51324906 ~ 51328763 (-) False LOC110486734
XM_021558555.2 mRNA upstream 228767 51324906 ~ 51328841 (-) False LOC110486734
XM_021558556.2 mRNA upstream 228767 51324906 ~ 51328853 (-) False LOC110486734
TU1351447 other downstream 228761 50780265 ~ 50781858 (-) True G1185046
TU1351422 other downstream 252575 50756638 ~ 50758044 (-) False LOC110485208
TU1351387 other downstream 382080 50626647 ~ 50628539 (-) True G1184986
TU1350091 other downstream 1174287 49835663 ~ 49836332 (-) True LOC110486698
TU1349952 other downstream 1322163 49685338 ~ 49688456 (-) True G1183706
TU1352616 other upstream 225661 51321800 ~ 51323931 (-) True G1186080
TU1352611 other upstream 256170 51352309 ~ 51373954 (-) True G1186075
TU1352690 other upstream 393638 51489777 ~ 51490241 (-) True G1186154
TU1352963 other upstream 828824 51924963 ~ 52028974 (-) False G1186381
TU1352758 other upstream 914551 52010690 ~ 52011211 (-) True G1186216

Expression Profile