RNA id: XM_021558557.2


Basic Information

Item Value
RNA id XM_021558557.2
length 2816
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC110486734
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51324906 ~ 51329316 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGCACACGGCAGGGAAGTGGGCAGTGTGTCTAAGGTGTGACACGAAGGGCAAAGGCTAGAGAGGCTGTCCCTCTGCCTGCAGTAGCACACCAGTTCTAGGCGTATCCTCACTCAAGGTTGTGGAGACACATGAGTGCAATGTGACTCAGCTAGGTGTCAGGTGTGGTTTTAAGTCAAAGCTAGCAACATCATTCTGTTTAAGTTCAAAGTTAAATCGCAGAGATAGCAGGCCAAATGACGTATCTTGGACCAAATTGTAGAATTGGGCACCAGAGCCTGATGGGCATTCTCCTGCTGGGCTGCTTGCTGACCTGTCTACTGTACCGACCTGCTATCACCTGGCTCCCTGTCCTGGCCAAGCACTTCCAGGCGGAGCACAAACAGGACGTTACCGTGCTGGTCTGGCACTGGCCCTTTGACCATCCCTTTAAACTGAACTCCTGCAGGTCCTTGTACAACATCGAAGGCTGTCACCTGACAGCGGACCGAGAGCTGTACAGTCAAGCGGATGCCGTTCTCATCCACCACAGAGAAATCGAAGAGGATTTATCCAACCTGCCCCAAGAACCACGGCCCTCCTTCCAGAAATGGGTGTGGATGAATTTCGAATCGCCGGCACACACGAATAGAATACCTGGCTTGGAAGATCTGTTTAATGTGACTTTGAACTACAGGCAGGATGCAGACATCAACATGCCTTATGGATCTCTCGTCCCTCGGActacagagagggaggagtttgtCCCGCATAAAAAACGACTGGTCTGTTGGATCGTTAGCAACTGGAACCCAGGACACAAGAGGACTTGGTACTACATGGAGCTGCGCAAATTCATCAGGATTCACACCTACGGGGACCCTTTCAACAAAAAGGTATCTCTTAGTGAATACAGAATGATCGTGGCCAGCTGTAAATTCTACTTGTCTTTTGAGAACTCCGTCCATAAGGACTACATTACAGAAAAACTATATAACGCTCTCAAGTTGTGCGCAGTTCCTGTGGTCATGGGCCCGACAAGAGGGAACTATGAGAAGTTCATCCCTGGAGATTCCTTCATCCATGTGGATGACTTCCGCTCGCCCAGAGCCCTGGCCAAACACCTCCTCTTCTTGGACGAGAATGAGGAGATGTACCGTAAATACTTCACGTGGCAGAGGATCCACACGGTCCGTATCAACAGCTTCCCCATTCAGAATGCCTGCAACAGCTGTGAGTACATCAGAGGCCACCCTGAGAATCAGATGGTTACTGAGCTCTATAAATGGTTCTGGGAGGAATGATGCTGAGACATTTGGAGCAAATCTACTACAAATAAATAATATCCACTTCTCCATAGTCCGGGGTGGGGGGGGAACTGAGCAATATGTATCTTTTACACAACGGCAGAAGTGCCAAAAATTATATTTCATTAAAGTACATTCACCGAACTTTCCCCACTTGAACAATTAATGGGGCGTTACAAGTCAAAATGGTATATATTTTGTacttttcttctgtcttttgcTACTGCGCTACCACATGTTAACTGATGAAAACAGTGTGGTGGTGACATACCACCACTATCTGCTTGTTTACTATTGGGTCGTTCCACTAAAAGAGTGCCTTTCGCATCCTTTTTTATATTGGTGCACAATGTTCTGCACtaatattacattttaaaaaaacctGTTATAACAAAGTGCCTTTTTTAATAGAGACCGAATGGAGAATTCAATCAATCAGATGTGTATAAAGGCTTGCTGAAGTGCCAAAACGTAGccttttgacatgtccctccatcaaccctgtgtcacttctaggaagatttcaaCCCCCTTAATCCCCAAGTTTCTCCAAGTTTCAACATCATTGTAAAGCCATAGTTATTTTACTTTAACAAAGTCATCTCTGAAGATGTATTtgtttcatgtgattagtgatacaatgagggacagatgtaaatgaaaggtcaaccctgttatgtgaaCTGGCCTATCGTTTTTAATACGGTGAAACTATTCATTTTTGTTaaatagaacatctaatagtcaaatcatagagtAAAAGCAGGTTAGCTGGTTCTAGTCTTTTTGGCTGTTTCGTGGTGAAGAAACTGAGCGGGTCGGGCagaacacgtcaaccctgttactcatagacaggCTTCCATTCAATTGCCATTCCCTTTCGCAACAACCTTCCATTCCCCTGTCACAAGCGGATGTATGGCTtatttaagaaaaaaatcttCAGCCCTGTTACTATTTTAACATTTAATAGGCCCttaataaaatattatttttttagatgagggaaaaacatttttttatagttgaacatgtgctcttttaGACAGActgttaaaatgaggtgaaatccCTTTTTTTTTTGGACCAaattacacttctcaaaaggcaccaaaTTGGTGGAAAGACCCTATTAACATTACTGTGAGAGAGATTTGGTTTTGAACTGTAATGCCTGTTGAGAAAGTCTGGTTACTGTTGAAGGTACTATAGCTCTCCTCCCTCTGGTCACTGGAATAGACTCTGTGAGAGACTCCACTGTGATCAGTCTTGCTTTTTCTAAACCATGTGATTGGGAACGTGATAAAGGGTAATGTACGGTAGGTCTCTCTCATATACAGGTAGAACTCCCTGTATTGTCAACGGTTGTTAGGCAATTGCCTTTTACTGTACTATGGTTGCTAGGTTGTCACAATGAATGTGTCATGTATTTTCACACATTAAGGGACCTTGTTCGCTCCACTGTTAGGCAACAGGGATTGATTACAGATTCAGTGTATTGATTAGGAAAATAAAGATTGATGTAGTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1351799 lncRNA downstream 6307 51318273 ~ 51318599 (-) True G1185369
TU1351785 lncRNA downstream 29383 51295271 ~ 51295523 (-) True G1185355
TU1351783 lncRNA downstream 32099 51292541 ~ 51292807 (-) True G1185353
TU1351778 lncRNA downstream 34532 51289769 ~ 51290374 (-) True G1185348
TU1351740 lncRNA downstream 69160 51255513 ~ 51255746 (-) True G1185310
TU1352649 lncRNA upstream 48694 51377457 ~ 51378219 (-) True G1186113
TU1352686 lncRNA upstream 155527 51484290 ~ 51484518 (-) True G1186150
TU1352689 lncRNA upstream 158738 51487501 ~ 51487704 (-) True G1186153
TU1352615 lncRNA upstream 174412 51503175 ~ 51505681 (-) True LOC110486743
TU1352711 lncRNA upstream 204528 51533291 ~ 51533538 (-) True G1186175
XM_036941434.1 mRNA downstream 94709 51010619 ~ 51230197 (-) True LOC110485210
XM_036941435.1 mRNA downstream 228767 51010619 ~ 51096139 (-) False LOC110485210
XM_036941436.1 mRNA downstream 262619 51010619 ~ 51062287 (-) False LOC110485210
XM_036941431.1 mRNA downstream 441212 50876515 ~ 50883694 (-) True LOC110486730
XR_005035584.1 mRNA downstream 456162 50867328 ~ 50868744 (-) True LOC118938315
XM_021558560.2 mRNA upstream 76494 51405257 ~ 51411271 (-) False LOC110486738
XM_036941444.1 mRNA upstream 76494 51405257 ~ 51412417 (-) True LOC110486738
XM_021558563.2 mRNA upstream 93827 51422590 ~ 51424573 (-) True LOC110486740
XM_021558564.2 mRNA upstream 98922 51427685 ~ 51441706 (-) True LOC110486741
XM_021558569.2 mRNA upstream 114124 51442887 ~ 51458885 (-) False LOC110486742
TU1352616 other downstream 975 51321800 ~ 51323931 (-) True G1186080
TU1351447 other downstream 543048 50780265 ~ 50781858 (-) True G1185046
TU1351422 other downstream 566862 50756638 ~ 50758044 (-) False LOC110485208
TU1351387 other downstream 696367 50626647 ~ 50628539 (-) True G1184986
TU1350091 other downstream 1488574 49835663 ~ 49836332 (-) True LOC110486698
TU1352611 other upstream 23546 51352309 ~ 51373954 (-) True G1186075
TU1352690 other upstream 161014 51489777 ~ 51490241 (-) True G1186154
TU1352963 other upstream 596200 51924963 ~ 52028974 (-) False G1186381
TU1352758 other upstream 681927 52010690 ~ 52011211 (-) True G1186216
TU1352962 other upstream 697155 52025918 ~ 52030660 (-) True G1186381

Expression Profile