RNA id: XM_021558558.2


Basic Information

Item Value
RNA id XM_021558558.2
length 3800
RNA type mRNA
GC content 0.46
exon number 19
gene id LOC110486735
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51344378 ~ 51373991 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTTAGTATGTCAGTGAGccagacacagcccagaccaccacagccaaacacacagggtggaagagaaggagagcgagtcagagacagagagttcTAGGCAAGTGATGAGAGCACAGTGACTACTTGTCATTTTCTCTCTCatttggtgatgtcagcagagCTCAATCTACTAGACAGAAGCTTGACTGAGTTGATGGATACGGGTGCCATTTTTCTTCAGTAAAACAACCCTGAGAAGTTTGGAGAAACTCCTGAGAAGAAGAGAAGACGGATCTTTATCACACTTTTGAATAGACCGTTCAGATAGGGGCAGAGTTTCAGCCCTGGTCTAATCTTGTGCGTTGTGATTCTCATAGAGATAGTGAGATTCTTCTTCACCATGACAGGCAGACTGCATCTCCTGATTCTGGCTCTTCACCTTGCCCTGCTGATGGAACATGTATCAGGCTGTCCTAAAGGATTCTCTACAAATGGGAAACATTGCATTGATGAGAATGAGTGTAATCCTCCTAGTGATGACTATAACTATGACACTGAAACACCACATATCTGTGGTAAGAATGCAGCATGCATCAACACCAATGGAAGCTTCTACTGTCAATGTGCTCCTGGGTTCAGATCATCATCACAGTGGATGAACTTCACAGCTGACTCACCTGAAAAATGTCTAGACATCAACGAGTGTTTGGAGAATAAGGACATCTGTGGTCCCAATGCCGAGTGTCACAATACATTAGGGTCCTACTCCTGCATCTGCAATGAGGGGTTTGTCTCCAGTACTGGAGTGGAAATATTTATATTTGGCCAAGGAGTCACATGTGAAGATAGAAACGAGTGTGAGGACGACATCACAATTTGCGGGAAGCATACACAGTGCGTCAACACACCAGGCAACTACTCCTGTGTCTGCAATCCAGGGTTTGGCCTGAAGTCTGGCAACGCTCAATTCACAGGGAATAGAGAATCGTGTGAGGAAATAACAGATCAGAAAGCCACCACAGACCAGACAGCAACCACAGACAGTGAGGATGCTCAAGGTGCTAAAGACTTGTGTAAAATAAATAAGTTTATCTGTGGAGGGAATGGAACGTGCCATAATGCCACCAACGGTGGCCATCGGTGTGCGTGCCATGCAGGATTCACCAACTACGGAGACCCGCAGGGGAGATGTACTGAGTTGAACTGTGATATGTTTGCGAGCGAGAAGCAGATGGTCATCCCAGGTCTGCAGGATGCTGTGGCCCTGATGAGGACCAGTTGTCTGGAGTTGAGGGAGAGTAATACGGCAGAACAAGTCGATGGAGAGGCCCTGCTAGAGacTCTGTTGTCTGCTATAGACAGGCTCCTGTCTGGCGGGCCTCTGAAAAATAACAAGGAAGTGAGTGTCTTGCTGGACCTGGTAGAGACTGCTCTGAGAATTATAGGACCTCTGCTGAAACATCCCGAGACCAGGAGGTTCAAAACTCACACCGAGGTGGAGCTGTTGGTGCAGAGAAATGCCTCCTCACCCCAGGGGCCCCTCACCTTGTCATCTACACACGCTCAGCTAGACAGCCACTGGGAGACTGCTGCTGGAGACACCTCCTACCCAGGATTTGCAACAGTGTCCCTGCTCAGCTATAAGGGTCTGGAGACATCCACCAACCATTCCTTCTCAGGGCTGCAGGCACAGGAGGGCCACAGCTTTCAGATCAACTCCAAAGTGGTGACGGCCACCATGAGTAACAAGGACACATCCTTTCTCAAGGAGCCAGTCACATTCACCTTCTCCCATTTGAAGGAGACAGATGAAGGGAACTACACCTGTGTGTACTGGGATGAGTTGGGAGAAGGGACCTGGTCTGATCGAGGCTGTTTCCTGGTGCAGTCCAATGCCACCCACACTGTGTGCTCCTGCTACCATCTCAGCAGTTTTGCTGTTCTTATGGCTCTCTATGAGTTCAAGgacaCATTCCAGCTGCAGCTGATCACCTGGGTgggcctgtccctgtccctgctgtgTCTCTTCATCTGcatcctcaccttctccctgatcCGCTCCATCCGGAGCACCCGCAATACCATCCACCTCCACCTCTGCCTCAGCCTCTTCATCGCCAACCTGATCTTCCTCGTCGGCATCTCACGCACCGAGAGCCAGGCTGGTTGTGCGGTGGTGGCTGGGCTGCTTCACTTCTTCTTCCTGTCGGCGTTCTGCTGGATGTGTCTGGAGGGAGTACAGCTCTTCAGAATGGTGGTTCTGGTCTTCAACACCACCTTAAGGCCCCTCTACATGATGGCGGGGGGCTACGGCGTTCCTGCTGTCATCGTCGCCATCTCTGCCCTCGCCAACGCCAAAGGATACGGAACCGAGCGCCActgcTGGCTcaaccttgaggatggattcatCTGGAGCTTCTTTGGCCCTGTCTGTATCATCATCATGgtgAATGTGTTTTTCTTCCTCATCACAGTGTGGAAGTTGGCCCAGAAGTTCTCCAGCCTGAACCCTGACCTTGACAAACTCCGCAAATTCAAGGCATTCACCATAACTGCAGTGGCTCAGCTGTGTGTGCTGGGCACCATGTGGATCTTTGGCTGTTTCCAGTTTGAGGAAAGCACGCTGGCCATGTCGTACCTGTTCACCATCCTCAACAGTCTGCAGGGGGTCCTAGTGTTCCTCATGCACTGCCTGCTCTCTAAACAGGTGAGAGAGGAGTATGGCAAGATCCTGGACAGCATCTGTGCACTGCAGAAGACGAAGTACTCAGAGTTTTCCTCCAACCAGTCAAGCAACAGCAAATCACAGACATCCAAGAGCGCACAGAACACGGGAGAGTCTCAGATCTAGGGGGCTGGGCGCTGGTTGCTGGACATGACCCCATGATGCCTGACCTCGTGACCTCCTAGCAACACCTGGGAGTTTTATAAAACCATAATCACCCTGGTTTTATGACAGGCATAAGTTAATgcttgcctggtcccagatcggtttgtgctgtcttgccaaaagAGCACAAAAGGACCAGGATAGATTGATGGGATGGTTgatgtctgttttttttgtgaCAACTATATTTCGCTTTAAGCAGTATTGTGCACATTTTTTAAAGATTCTATAAATATTACTGTACTTTCTCGTTGTGCTGGCCTCGATATTATTTTAAGCTAAAACTCCAAAGAGTAACGTTATTTATTGTTTTACACTGATTTTCCTATTGACAGTTTCATGTGTCTTTTTCCAACCTTGATATTCTTTGGATTATATAATGCTGATGAGAAACCCCCCTCCTACTGTAGAAGAGTGGACTAGTCCTGCATGGTTTAACCAGGGACAACTCATCATGGATTATTACATTATGCATTATCCAGGTACTTTCTCTGATCTTAAAATACATAACAGATGAAAGCaacaatttatttaaaaaatagtcATAAGCTATcatggttttatttatttttaaatcattGTTTAAAACAACCATCAAAGGTCGAGTTGTGAGAGTCAAATTGAAATCATGTCAGATTGAAATGGATATTCTGTGTCTATAGTTTTATTGtatctcaatttaaaaaaaagatcAACCAAAAAATGTACAAGAATCATGATTATGACTGCTACATCGTTTCTAGTAAGGTGTGCATCCTGTCAAATAAGAACGAATTAAAAttattgtaaatattttcttagtgAAGATCATTtgtatgattgttttttttactggGAAATGGCATGCTTTTACCACTGTACTGTAACTTCTCTGATTTTAGACTTTATTTTCCATGCAATATTTTAATTCAATAAAATTAAAATATTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1351796 lncRNA upstream 38213 51313766 ~ 51313985 (+) True G1185366
TU1351777 lncRNA upstream 61948 51289810 ~ 51290250 (+) True G1185347
TU1351773 lncRNA upstream 65964 51285958 ~ 51286234 (+) True G1185343
TU1351772 lncRNA upstream 66349 51285630 ~ 51285849 (+) True G1185342
TU1351757 lncRNA upstream 80484 51271479 ~ 51271714 (+) True G1185327
TU1351875 lncRNA downstream 68926 51442917 ~ 51471830 (+) True G1185435
TU1351891 lncRNA downstream 91352 51465343 ~ 51468001 (+) True G1185451
TU1351897 lncRNA downstream 102344 51476335 ~ 51481810 (+) True G1185457
TU1351904 lncRNA downstream 111068 51485059 ~ 51486576 (+) True G1185464
TU1351906 lncRNA downstream 115478 51489469 ~ 51489672 (+) True G1185466
XR_002468101.2 mRNA upstream 359356 50991494 ~ 50992842 (+) True LOC110486733
XM_036941432.1 mRNA upstream 386981 50939574 ~ 50965217 (+) True LOC110485209
XM_021558543.2 mRNA upstream 457719 50885729 ~ 50894479 (+) True LOC110486729
XM_036941426.1 mRNA upstream 477352 50832856 ~ 50874846 (+) False dnm2a
XM_021559466.2 mRNA downstream 17869 51391860 ~ 51394113 (+) False LOC110487554
XM_036941443.1 mRNA downstream 20445 51394436 ~ 51402528 (+) False LOC110486737
XM_036941441.1 mRNA downstream 20447 51394438 ~ 51404580 (+) False LOC110486737
XM_036941442.1 mRNA downstream 20449 51394440 ~ 51404580 (+) True LOC110486737
XM_021558573.2 mRNA downstream 188373 51562364 ~ 51566331 (+) True LOC110486745
TU1350772 other upstream 365632 50985813 ~ 50986566 (+) True G1184435
TU1350149 other upstream 1468763 49882821 ~ 49883435 (+) True G1183875
TU1350070 other upstream 1517184 49832221 ~ 49835014 (+) True G1183819
TU1348832 other upstream 1767636 49580326 ~ 49584562 (+) True ndua4
TU1348816 other upstream 1929436 49419570 ~ 49422762 (+) True G1182742
TU1351847 other downstream 10181 51384172 ~ 51392082 (+) True LOC110487554
TU1351876 other downstream 71916 51445907 ~ 51446557 (+) True G1185436
TU1351980 other downstream 253691 51627682 ~ 51628676 (+) True G1185521
TU1351986 other downstream 277622 51651613 ~ 51653770 (+) True G1185527
TU1351981 other downstream 319892 51693883 ~ 51695058 (+) True G1185522

Expression Profile