RNA id: XM_036941442.1


Basic Information

Item Value
RNA id XM_036941442.1
length 3658
RNA type mRNA
GC content 0.49
exon number 13
gene id LOC110486737
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51394436 ~ 51404580 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGAGAAAGGACGATACTATTTGGGCGGTGCGGTTGGTGGTCGTCGCAATGCAATAACATTCAATATGGAGTACATAATACTGTGATTCTTATATTTCGGCTACTACAAATAGTGCTAGGATGCGCAATGCAGCGAGTGCCTCTTTGTCTCTGGGATCGCTGGGTCTGCTGCGTCTCTTCGGGGTCCCCTGGTCCTGGAGCTTAGCAGCAGGCTTCGGGGTCTTTCTGGGCACAGGTGGTTGGAAGTACCTCTACATCGTAGTCCGTACTGCCAAAAGAGACCTAAATGGCCTTTACGTGTTGTTACGAGTCAAGATAGCCTTGTGGCACCACCTACGGCGCAACAGCAATATCCCCTCCATCTTTGCCCAGACGGTGAAGCAGCACCCAAATAAACCCGCCCTCATCTACGATGCCACAGGAGAGACGTGGACCTTCACCCAGCTGGACCTGCTGTCTAACGCTGTGGCCCAATGGGCTCTGGCCCAGGGCTGGGCCCCGGGGGATGTGGTAGCCCTCTTCATGGAGAGCCGACCCTTGCAGGTGGCCCTCTGGCTGGGCCTGGCCAAGGTGGGGGTGGAGGCAGCACTCATCAACTTCAACCTGCGGAGGGATGCTCTCCTGCACTGTGTTGGAGTGTCTGTGTCCAGAGGGATCGTGTTCGGAGCCGAGCTGGCTGATGCCATGTTGGAGGTGAGCTCATCCCTGAGCCCGTCGATGGTGCGGTTTTGTACAGGAGAGCTCAGTGTAGACTGTCTTGCCTCCCTGGCTGCCCAGAATCTGGACTATATCCTGGCCTCTGCCCCTACACTGCCCCCTCCTCCCTGCATCCCACCCAAGAGCTTCAATGATCGTCTGTTCTATATATACACCTCAGGCACCACAGGACTCCCTAAAGCTGCCATAGTGGTGCACAGTCGGTATTACCGTATTGCTGCTTTTGGCTACCATGCTTTCCGCATGCGCCAGGATGACATCATCTACGACTGCCTTCCCCTCTACCACTCTGCAGGTAATATCATGGGTGTAGGCCAGTGTCTCATCAATGGACTCACTGTGGTGGTGAAGAAGAAATTCTCAGCCAGTCGCTTCTGGGAAGATTGCATCAAGCACAACTGCACTGTGGTGCAGTACATAGGGGAGATCTGTCGCTACCTGCTGTCTCAGCCGGTGCGGCCTTCTGAGAAGGGTCATCGGGTTCGCCTGGCAGTGGGGAATGGGCTGCGTCCTAGTGTCTGGGAGGCCTTCACCGAGCGCTTTGGTGTGGCTCAGGTAGGGGAGTTCTACGGAGCCACCGAATGCAACTGTAGCATCGCCAACATGGACGGCAAGGTGGGAGCTTGTGGGTTCAACAGCCGCATCCTGCCCAATGTGTACCCAATCCGCCTCATGAAAGTGGATGAGGAGACCACGGAGCTGGTGAGGGACAGGCACGGCCTGTGTGTGCCCTGCCGTCCTGGGGAGCCAGGGCTGCTGGTGGGAAGGATCAACCAACAGGACCCGCTACGGAGGTTTGATGGCTACGCCAACCAGGATGCCACCAGGAAGAAGATCGCCAACAATGTCTTCAAGAAAAATGACTCGGCATATCTGTCAGgGGATGTGTTGGTGATGGATGAGCTGGGCTACATGTACTtccgggaccgcagtggagacaCGTTccgctggagaggagagaacgtCTCCACCACCGAGGTGGAGGGAACACTGAGTGGTCTGCTGGGCCAGGCCGATGTGGCTGTGTATGGGGTAGCTGTACCAGATGTGGAAGGGAAGGCAGGGATGGCTGCCATTGCAGACCCAACAGGGACATTTGACTGTGATGCGTTCCTGCGAGTGGTCCAACAGGCCCTTCCCCCTTACGCCCGTCCCGTGTTCCTACGCATCTCCCCACAAGTAGACACCACAGGTACCTTTAAAATCCAGAAGACCCGGTTGCAGAGGGAGGGATACGATCCGCGCTTATCAACCGACCAGATTTACTTTTTGAACTCCAGAGCAGGGCGTTATGAGGCTGTGAATGAGGAGCTACACAGTGCTATAGTGGAGGGTAGAATGGCTCTATGAGATGGACTATTTTAAGCTGGGTTTACACAACACGTTTATGAGGCTGCTTTGAGCCACAGCTTGTTGTAGCTATGTTAAATCTAATCACATAACTGTTTTCGCGAGACACGGTGGTATGGACAATCCTCACGACCAAGTGAGGAATCTTGTAGTGTGTGACCCCTGTCTATGCCACATGGTTTAGTGTGTGAGCCCTGTCTGTGCCACATGGTTTAGTGTGTGACCCCTGTCTGTGCCACATGGTTTAGTGTGGCACCACTACGTTGGCAAGACAACAAAATACTACAGGAAAGATGGTCGTTTAGTGCGAGAGGCTCAGCCATGTTAGGATTTTGAAAGTCATGTAGTGCACACCGGCTTTAGGAAAGTGACTGTCAAGGTGTCAGATACTGGAGACTGTGATATGCTGGAGTGGAAAGCCTTATTGTGCCGTTATAATGCATTGTAAGACTTGTCATAAGCATGCATGACCCCTTATAATGTCTTATCAACTCATAATGATCCTGTCTCAACTTGATATTTTCATACGTTGTGAAAAATAACATAGTATTATAAAGGCTCATCTGTGCTTAGAACACGTTATAAAGCAGTACACCTGCAGGCTTTAAGTAGTGTTATTACTGAAGTCTCCATGTATTAGTGTTTCTCCCTGGATCTAGTCTAGATCAGGGGACTGAAGGGCTACTGATCAATCAATAGGGAAACCTTACTGTTCCAAAACCATGTGTTAACACTATCAATAACGTACAAGGACAAGGTTGGATGAGGGCTTTTTTCCCCCTTTTCATTCCCCCTTCATTTGTGTTGTTTCTTAGTTTAGCCAAATGAAAACGTTCAAGCCTTCAACACTACAATGCACATAGAGTATAGCAAGTTTTCACATGAAACCAGGATGTCTGTTACAATGACAGCGTTTGTCTGTTTGTTACAATGAGAGTGTAAAGGAAATGAGAGCTGGGACTGAATAGACCACAGTCGTTGAGATACCAGTCTCTTGAAAATTGTGTTCCAGGCTATTTGCTCCCAACCTTGTAATAGTAGTGTGCCACCATGTACATAACAAAATACTGAACAGGTTTTTAGCAATACTTGAGTGTCCATGTTGGATGAGGTGTTGCTACCTGTGTGTTAATAGTATGATAGAACATGCCACAGCTGAACATGCCTCTTATTCCGAACACTAACTGTAGGAGCTTCGATTGCGAgatgacattttttaaatgtaaaactaAACCTGATTACGTAACATGTTTGAAGTAATGGATGATATGCACTGACTGACCACTCAGGTTCACACACATTGATATTATGTGCCTTGTGGGAACCCTGTGGAAGCCCTGTGTGTCCTGGAACTATTGGGGTTTTATGCTTAACCTGACTAGGGAACTCCAATACATAAGAAAGAACATTATTTAAACAATATCTTCACAATCTGTCAATTAGTCAGAGATCATGGTTGCCCTATCATTATGTAATAAAGCAATTTCTCAGAGTAATATTGTAGATAGAATTGATTGGGAACATTATTCTAGCTCTCCATTTTCATACATTTGTTTAGGTGTAACTCAAAATAAAGGTTTGTAAAAGACA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K08745 SLC27A1_4, FATP1_4; solute carrier family 27 (fatty acid transporter), member 1/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1351824 lncRNA upstream 34717 51352242 ~ 51359723 (+) True LOC110486735
TU1351796 lncRNA upstream 80455 51313766 ~ 51313985 (+) True G1185366
TU1351777 lncRNA upstream 104190 51289810 ~ 51290250 (+) True G1185347
TU1351773 lncRNA upstream 108206 51285958 ~ 51286234 (+) True G1185343
TU1351772 lncRNA upstream 108591 51285630 ~ 51285849 (+) True G1185342
TU1351875 lncRNA downstream 38337 51442917 ~ 51471830 (+) True G1185435
TU1351891 lncRNA downstream 60763 51465343 ~ 51468001 (+) True G1185451
TU1351897 lncRNA downstream 71755 51476335 ~ 51481810 (+) True G1185457
TU1351904 lncRNA downstream 80479 51485059 ~ 51486576 (+) True G1185464
TU1351906 lncRNA downstream 84889 51489469 ~ 51489672 (+) True G1185466
XM_021559466.2 mRNA upstream 327 51391860 ~ 51394113 (+) False LOC110487554
XM_036941440.1 mRNA upstream 20449 51344378 ~ 51373991 (+) False LOC110486735
XM_021558558.2 mRNA upstream 20449 51352198 ~ 51373991 (+) False LOC110486735
XR_002468101.2 mRNA upstream 401598 50991494 ~ 50992842 (+) True LOC110486733
XM_036941432.1 mRNA upstream 429223 50939574 ~ 50965217 (+) True LOC110485209
XM_021558573.2 mRNA downstream 157784 51562364 ~ 51566331 (+) True LOC110486745
XM_021558577.2 mRNA downstream 181666 51586246 ~ 51590496 (+) True LOC110486751
LOC118938087 mRNA downstream 359001 51763581 ~ 51764616 (+) False LOC118938087
XR_005035589.1 mRNA downstream 379308 51783888 ~ 51822874 (+) False LOC118938318
XM_036941448.1 mRNA downstream 379308 51783888 ~ 51823957 (+) True LOC118938318
TU1351847 other upstream 2358 51384172 ~ 51392082 (+) True LOC110487554
TU1350772 other upstream 407874 50985813 ~ 50986566 (+) True G1184435
TU1350149 other upstream 1511005 49882821 ~ 49883435 (+) True G1183875
TU1350070 other upstream 1559426 49832221 ~ 49835014 (+) True G1183819
TU1348832 other upstream 1809878 49580326 ~ 49584562 (+) True ndua4
TU1351876 other downstream 41327 51445907 ~ 51446557 (+) True G1185436
TU1351980 other downstream 223102 51627682 ~ 51628676 (+) True G1185521
TU1351986 other downstream 247033 51651613 ~ 51653770 (+) True G1185527
TU1351981 other downstream 289303 51693883 ~ 51695058 (+) True G1185522
TU1351994 other downstream 293296 51697876 ~ 51698646 (+) True G1185535

Expression Profile