RNA id: XM_021558560.2



Basic Information


Item Value
RNA id XM_021558560.2
length 1983
RNA type mRNA
GC content 0.51
exon number 6
gene id LOC110486738
representative False

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51405257 ~ 51412417 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGGAATACGCTGGCCCCACCAGTCTTGTGACTTTAAATGATCAAATGATTATTGCATCACCCTCATCGAAATGTTATTGGCTGTATAAGGCAGACCCCCTTGCATCATCACTCTGACGTGCCAATCTCCACTCTTTCCAACAACACTGATCTCAGAACACTGCGTCAATGAAATGGGACTATCACTCACTCTCTGGTCTTCCTTAAAAGATATCAGGTGGATAGCTGTGATTTATCATGCAGTGGGAGGTGTTTATTTGCATATCCACTACTCAAGCAGATGGAAGCCCTATGGACATATTCATTTCCTTTAAGCATTAAAGTTTAACTGAGGTAGACCCCAGAGAACCCTGGCAACAGCGGTGGGAGGAGCATAGTAACCTTATCTGACCCTGCTCCTGCTCCAGCCCTGTTTTAAAAACCTGACAGGCAGAATGACATCCAGGCACCGCGAAGACAATCTCTCTTGCCCCCTCTGTGGAATTATCTTCAACCAGCCCGTTGTGCTCTCCTGCAGACACAGGTTCTGTAAAACATGCCTTCAAGACAGCTGGAGTACCCAGGACAGTGAGGACGACTGCCACTTCTGCCCTCTATGCTGGAGACGTTCCTCCATGAATGAGATTGTGGTAAACACCATTCTGGAGAAGACCTGCGAGTCCTTCAGGAAGGAGATGAGCAGCAGGAATAACCCTATGGGGTGTAAGGAACACGGAGAGACGCTCTCACTCTTCTGTCTGGACGATCTGCAGCCCATCTGTGTTGCGTGCCAGACGTCGGCGGTACACAAGGGGCACAGGCTCTACCCCATTGGGGAAGGTGCACACGACTGTAAGGAGGAACTCAAGACTGCATTGACCCCATTGAAGGAGAAGCTGCAGCTGTTCAAGAAGGCTATGGTCGTCTGTGATCAAACGGCAGAGCACATCAAGAACCAGGTTGAGCATACTGAAAGGCAGATAAAGGATGAGTTTGAAACCCTTCACCAGTTCCTGAGAGATGAGGAGGCAGCCAGATTGAATGCTCTGAAGGCAGAGGAGGATCAGAAGAGTCTGCTTCTAAAGGAGAAGATTGAGGAGATGTCCAACGAACTGACGTCCCTCTCAAACACCATCAGAACCGTAGAGCAAGAGATGAGGTCTCAGGACATCCCATTCTTACAGAACTACAAGGATATCATCAAGAGAACCTGGCATATGCCGCTGGATCCAAAGATTATTCCTGGAACTCTGATTGATGTTGCAAAGCACCTGGGTTCTGTAAAGTTCAACATCTGGGACAAGATGAAGAGCATCATTCAATATActcCTGTGACTCTGGACCCCAACACAGCTGCTAGCTGCTTCATCCTGTCTGAGGATCTGACTGTGGTCCAGTGCTGCTCGCAGGTCTTCAAGCTCCCAAACAACCCCGAGAGGTTTGACATCAGTGCTGAGTTACTGGGCTCCGAGGGGTTCTGCTCTGGCCGCCACAGCTGGGAGGTAGAGGTAAAGGCTAACACATACTGGGTGGTAGGTGTGGCCAGCGAGTCTATCAACAGGAAGGGCAAGCATGTGCTGACGCCAGCCGAGGGCTTCTGGACTATACGCTTCCGCAATGGCGAGCACAAGGCGTGCACGGCACCGTGGGCGCCCTTGACCATGATGAGGAAGGAGCCTCAGGTCATCAGGGTGGTGTTGGACATGGACAGGGGCAAGGTGACCTTCTTTGACCCCCGGGAGAGGACGCCCCTCTATACGTTTACAGACCTCATCTCACCCCGGGTGTTTCCTTACTTCTGCACTGCCTGTAAGGAACACCCACTGAGACTGCTGCCCGTCAGGCTGTCTGCTGCTGTGGTGCTCTAGAGGGCTCCATGGGGGTTCATTACTAACAAGCAGTGGAGGCTCAATTACTTACAGACAGATCCAGTTGAGTTTACTAGTCCTAGATGATGAAGGCTGATCACTTGGGACCGTCTGGAATAAAGCATGTAATGGTCTTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1352649 lncRNA downstream 27038 51377457 ~ 51378219 (-) True G1186113
TU1351799 lncRNA downstream 86658 51318273 ~ 51318599 (-) True G1185369
TU1351785 lncRNA downstream 109734 51295271 ~ 51295523 (-) True G1185355
TU1351783 lncRNA downstream 112450 51292541 ~ 51292807 (-) True G1185353
TU1351778 lncRNA downstream 114883 51289769 ~ 51290374 (-) True G1185348
TU1352686 lncRNA upstream 73019 51484290 ~ 51484518 (-) True G1186150
TU1352689 lncRNA upstream 76230 51487501 ~ 51487704 (-) True G1186153
TU1352615 lncRNA upstream 91904 51503175 ~ 51505681 (-) True LOC110486743
TU1352711 lncRNA upstream 122020 51533291 ~ 51533538 (-) True G1186175
TU1352718 lncRNA upstream 129731 51541002 ~ 51541418 (-) True G1186182
XM_036941439.1 mRNA downstream 75941 51324906 ~ 51329316 (-) True LOC110486734
XM_021558556.2 mRNA downstream 76404 51324906 ~ 51328853 (-) False LOC110486734
XM_021558555.2 mRNA downstream 76416 51324906 ~ 51328841 (-) False LOC110486734
XM_021558557.2 mRNA downstream 76494 51324906 ~ 51328763 (-) False LOC110486734
XM_036941437.1 mRNA downstream 76494 51324906 ~ 51328763 (-) False LOC110486734
XM_021558563.2 mRNA upstream 11319 51422590 ~ 51424573 (-) True LOC110486740
XM_021558564.2 mRNA upstream 16414 51427685 ~ 51441706 (-) True LOC110486741
XM_021558569.2 mRNA upstream 31616 51442887 ~ 51458885 (-) False LOC110486742
XM_021558570.2 mRNA upstream 31616 51442887 ~ 51458886 (-) False LOC110486742
XM_021558565.2 mRNA upstream 31616 51442887 ~ 51458887 (-) False LOC110486742
TU1352611 other downstream 31303 51352309 ~ 51373954 (-) True G1186075
TU1352616 other downstream 81326 51321800 ~ 51323931 (-) True G1186080
TU1351447 other downstream 623399 50780265 ~ 50781858 (-) True G1185046
TU1351422 other downstream 647213 50756638 ~ 50758044 (-) False LOC110485208
TU1351387 other downstream 776718 50626647 ~ 50628539 (-) True G1184986
TU1352690 other upstream 78506 51489777 ~ 51490241 (-) True G1186154
TU1352963 other upstream 513692 51924963 ~ 52028974 (-) False G1186381
TU1352758 other upstream 599419 52010690 ~ 52011211 (-) True G1186216
TU1352962 other upstream 614647 52025918 ~ 52030660 (-) True G1186381
TU1353318 other upstream 1248060 52659331 ~ 52659809 (-) True G1186670

Expression Profile