RNA id: XM_021558563.2


Basic Information

Item Value
RNA id XM_021558563.2
length 1984
RNA type mRNA
GC content 0.45
exon number 1
gene id LOC110486740
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51422590 ~ 51424573 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCCCGTCTACCCAGCCCTCCCTCACCTGTCTACGGCTACCACGCCCCACCTCTCTGTGCTGTGCCCTGTGCTGTGACACAGGACAATTTGAATAGAGGCGAGCTTCCTCACCTGTCTCACCTTACCTCTTCAAACAAACGGCTCCGTTTGAAACTTTACCCCAACCGAATTCACCGAATTCCACCAGGAAACCAACCGCAAATGATAGTTAGAAAAGAAAAGGTGGTCTAAACAAAGTATTTGTTAGGCCTATCTCCAAGCCAATTTAGAGACATGGAGCCAACGTATCGCGGTCTAGGTCGCTGTTCCTGCGCCTTTTGGTTGGCAGTGTCTTTCGACATATTCGGTCTGCTTGTTCTTTTGATCGGTGTTTTTGCGGACATATTCTTCTATGACTTTTTAATCTACGCCGGGGCCATCATCATCTTCCTCAGCCTCGTCTGGTGGGTGTTCTGGTACACGGGCAACATCGAGGTCCCCCCGGAGGAGCTGGAGGATGACGTCGGGCTCTTGAAGAAGGAGCGGGGCATCGCAGGTGCGGTGAGGCGGTTATCCAGCCGTCTCTCCAACAGTGTCAGGAACTCTCTGCGGCGGAATGGAGGCCCCCCCCGCGGGGTCGCGAGAAAGGCAGGGACCGGGCTGTCTACGACGCACATGAGGGATGCCCAACAGCAACCGAAGCCCCCGCCTGTCGTATTGACGATGGGGCCGCTTGATGAGGACATGCACACGGTGTCTGCATCCGTGGACACAGACATACCTGTCCCGTACACAGCTACAGAGACCTCGGCCATATGATGCGCAATGCGCACAAGGTTAGCCTAATATTTCCAATCGGTCATTAAGCCATTTAGGCTATAGCCTAGGGATACATTTTGTTATTGGATAGGCCTAATTTTTATTAAACATGTGCATAGATTATAGGTTTTATGGGCCAACTTCATTCTAGGCTATTGTTTTTGATGATAATAGCCCACAACTTTGATCCACAATTCAGCAGGCTATAATGTTCCTTATAATTAAATTAAATGACAATGTGTTTCAGTGAATGAGGAAAGAAACTGTGTGATCTAATGGAAACGGACGTCCTTTATCTTTCTGTTAACCATTAACGTCATTGAATGGCAGTGCACGCCTAAAGAGAAGCCCTCCTCAAACAATAAAACCGTTTCTGAGAGGGCGAAGTAGAGCTGCTGCTACATGAAACAAAGAAACGTAGGTTGACCATGAATTGTCTATCTTAGGAGTTAGGACACATTTTTGACATCGATCTAAACTGATGTAAGCTACAGTATGACTGTATGTTGCAACTATGACATCATGAGGTAACCATATATTTTGTCCACCAGAAGTTAGAGGCTTGGCAGCACTGAACCCCAGAAGGACATTTCACTTGTCCATCGCACAATGTTTACAAGCACATTTCGCTTTTAATATTGTCCTATGGCCTTTTTTCTTTGAAACATTTCGTTTTTAAAATCAAATTATGCTCCTCAGTGAggactttttgtttgttttatgttAATTTTGTGAATACTTTGTGGATAATTGATGCAATACTTTGATAATACAGAGATTTTTTCTAGCAAATATGTCAGACTTTCACTTTTAGGGCTAAGTGCTACTGAGAAGGTGCTTGTTGTGAACTTGACCTGGCACCTGTATTCTACATCCCCGTCCACAGTGGTGATAAGCAATATAGCACATTAACGACCTTTGTACCCTATGGATTTCcctacctttatttatacagacATTACTTTTGTATGTCCATATTACTGCCTCATCATGCTTTATGAACCTTTTACCTGTTTGTATTTCCAACTGACAGTTCTCAGATTTTTGCCAAACACAGTACCTACACATGGACTAGAATAACATATGAGTGTTACTGTGTGGAATGACAACACTTTGATTATCTACAGTAGGCTAGCTTTGACCTTGACACCTTGTTACTCCACACAATAAAGTATGGGAGCGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1352649 lncRNA downstream 44371 51377457 ~ 51378219 (-) True G1186113
TU1351799 lncRNA downstream 103991 51318273 ~ 51318599 (-) True G1185369
TU1351785 lncRNA downstream 127067 51295271 ~ 51295523 (-) True G1185355
TU1351783 lncRNA downstream 129783 51292541 ~ 51292807 (-) True G1185353
TU1351778 lncRNA downstream 132216 51289769 ~ 51290374 (-) True G1185348
TU1352686 lncRNA upstream 59717 51484290 ~ 51484518 (-) True G1186150
TU1352689 lncRNA upstream 62928 51487501 ~ 51487704 (-) True G1186153
TU1352615 lncRNA upstream 78602 51503175 ~ 51505681 (-) True LOC110486743
TU1352711 lncRNA upstream 108718 51533291 ~ 51533538 (-) True G1186175
TU1352718 lncRNA upstream 116429 51541002 ~ 51541418 (-) True G1186182
XM_036941444.1 mRNA downstream 10173 51405257 ~ 51412417 (-) True LOC110486738
XM_021558560.2 mRNA downstream 11319 51405257 ~ 51411271 (-) False LOC110486738
XM_036941439.1 mRNA downstream 93274 51324906 ~ 51329316 (-) True LOC110486734
XM_021558556.2 mRNA downstream 93737 51324906 ~ 51328853 (-) False LOC110486734
XM_021558555.2 mRNA downstream 93749 51324906 ~ 51328841 (-) False LOC110486734
XM_021558564.2 mRNA upstream 3112 51427685 ~ 51441706 (-) True LOC110486741
XM_021558569.2 mRNA upstream 18314 51442887 ~ 51458885 (-) False LOC110486742
XM_021558570.2 mRNA upstream 18314 51442887 ~ 51458886 (-) False LOC110486742
XM_021558565.2 mRNA upstream 18314 51442887 ~ 51458887 (-) False LOC110486742
XM_021558566.2 mRNA upstream 18314 51442887 ~ 51458887 (-) False LOC110486742
TU1352611 other downstream 48636 51352309 ~ 51373954 (-) True G1186075
TU1352616 other downstream 98659 51321800 ~ 51323931 (-) True G1186080
TU1351447 other downstream 640732 50780265 ~ 50781858 (-) True G1185046
TU1351422 other downstream 664546 50756638 ~ 50758044 (-) False LOC110485208
TU1351387 other downstream 794051 50626647 ~ 50628539 (-) True G1184986
TU1352690 other upstream 65204 51489777 ~ 51490241 (-) True G1186154
TU1352963 other upstream 500390 51924963 ~ 52028974 (-) False G1186381
TU1352758 other upstream 586117 52010690 ~ 52011211 (-) True G1186216
TU1352962 other upstream 601345 52025918 ~ 52030660 (-) True G1186381
TU1353318 other upstream 1234758 52659331 ~ 52659809 (-) True G1186670

Expression Profile