RNA id: XM_021558567.2


Basic Information

Item Value
RNA id XM_021558567.2
length 4827
RNA type mRNA
GC content 0.47
exon number 24
gene id LOC110486742
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51442887 ~ 51464818 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCGTAGCGATACGTCAGCTCTGCCAGCGTGGAATACGGAGCGCCAGTCCAGGAAGTTAAAATTATCGGGATAACGAAGCTGTTCAGCCGTCAATATTATAATATTCCTCACGTTCATACAGAGTGGATAGGCGGCGTATCCTTTTCTCAAGCTTTCCAACTGTCTGAAACCACCGCGTCACAAGATGATGGTCGACCCCACACTCGCTGAAATGGGCAAGAATCTCAACGAGGCCATGAAGATCTTGGAGGATGGCGGAAAAGCATCAGAACCGGATGCAGATAGACGACAGTTCAGCAGGAGTAGTATCCCTGGACCCCTACAGGGGGATGGGCAGGATGTGGCCAGTATACTCCAACTGGTCCAGAATCTCATGCATGACGATGAAGAGGAAGATAAGCCAAGCCATCGGATGCAGAATGTCGGAGAGCAGGGTCACATGGCGTTGCTAGGACACAGCCTAGCAGCCTACATCTCAGTGCTGGACAGGGAGAGACTCAGGAAGCTGATCACACGCATCGCTTCTGACACAACACTCTGGCTCTGCAGACTCTTCAGATATGAGAGTGGCTCAGCATACTACCATGAAGATGACAGAGAGGGCCTGCTGAAGGTGTGTCGCCTGGTCATCAACACCCGCTATGAGGACTACTCCACAGAGGGCTACACTGTGCTCAACTCCAGACAGCCTGTCATTTACCAGAGCGCCACCTGCAGGCCTGGACTGGGACAGCACCTCTGCAGCCAACTGGGTCTGCCTCTGTCCAGCCTGTGTACCGTCCCCTGTAACACCATTTTTGGATCCCAGCACCAAATGGACATTGCGTTGCTGGACAAGCTGATTAGAGAGGATGTGGAGACTGGGAAGCTTCCATTGCTGTTGATTGCCAATGCTGGCACCCCTGGGGCGGGACACACAGACAAGCTGGGCCGTCTAAAGGAGCTGTGTGAACAGTATGGCATGTGGCTCCACATAGAAGGGGTCAACTTGGCCACTCTGGCTCTGTGGGAGGTCTCATCCCCCGTTACGgCGGCCACCAGGAGTGACAGTATGACCCTGACCCTGGGTCCGTGGCTGGGCCTGCCTGCTGTCCCAGCTGTCACCCTCTACAGACACGAGGACCCAGCCCTGTCTCTGGCAGCTGGTTTGACCTCCAGTCAGCCAGTAGAGAAGCTGCGTGCCCTGCCTCTCTGGCTCTCCCTGCAGTACCTGGGCCATGATGGGATAGTGGAGAAGATTAGACACGCTGTAGAGCTCAGCCAACAGCTTCTGGAGAAACTGAAGACTCTGGCTTCCATAAAGACTTCAggtgtggtgtctctctctcggaTCCCGCCGATCTCAGGGGGCTCTCTACGGGACTTGCTGGGCTCTCTCATTCTGTCTATTGTGGAGGATGAGCTCAACTCTCCAGTAGTAGTGTTCAGGTTCTCCCAGGAGACCAGTGCAGAATCCAGTGGTGGTTCTGTGGAGGGCTACtttgctggagagagagaagtgctAGATTCCCTCAACAGATGGCTGTGTGAGCAGTTGGCACAGCTGGTGCCCGCCAGCGGGGTAGACATAGTGGAGTTGGAGGATGAGGGCACCTGTGTCCGCTTCACCCCTCTTATGACCGccgcagCCCTGGGGACCCAGAGGTGTGACGTGGATCTGCTAGTGGAGCGGTTGATTGAGCTGATTCCTGTGCTGAACTGTACGCTGCGTCTCAGACTGGACTTCAGAGAGGAGGTGTACCGCCACTCTGCCCTCAGTTACATAGAGGACCTCAGCTGGCCTGGCCTGGGAGCCGTCAGGTATGAGCCGAGGATTGAGGAGCTGAACGACAGTAAGAGACAGCTGGAGGTGGAGAAGATCAACAGTGAGCTGCTGGTGAAACTAGGGGATCTGGATGCAGACCTCATCTTCTCCACCGgCCTGGAGTTCGGACCCGAGAAGGACTGCATATTTATTGGCATGGCAACGGAGGACCTAGACGTGGCAGAGCTAGTGGATACGATAGCCGCCCTGGGGAGGGACATAGAGGAGAACGGCAGGCTATTAGAGAACATGACAGAGGTGGTGAGGAAAGGCATCCAGGAGGCAGAGTTCCAGCTCCAGAAAGACAACCAGGACAAACtcatggaggagGGTGTGTTGAGACAGATTCCTCTGGTCAGCTCCGTGTTGAACTGGTTCTCTCCGTTCCAGAGCACTGTGAAGGGCAGAACCTTTAACCTGGCTGCAGGCTCCCTGGACTCCACAGAGCCCACCTACTCCATGAAGGCCCAGACAGGTGGGCTGGCGTCGCCAGAAACCCCTACCTCCTCTGCCAAGAGACTGCCAGGACAGAGGCTGTTCCAGCGCGAGGGTGCGGGGGGCTCTGACTCCCACAGTGAGACCAGCTCCGTGGGCCAGGCTGAGGATCTCTCCAGGGAGAGGTTCCCACAACCCACCCCACCTTCCCCTGTCCCAGACGAGGCGGTTTCCGTGGTCCCTGAGAGCCCAGAGACCCCCCAGAGACCCCCCACGCAGGAGAACGGTGAGGTGGGTACAcaggaaggggaagaggaggagagagagcctgAGGGCCAGGAGGCACCAGTGGAGGAGACGGGCAGATAGGACAGCCCCCAGAGCAGGGTTATTTGAAACCAGCTCTGAAAGGTTCCAGGCCAGTCCAGCAGGTGTTGCAGAGCAGGGATTCATTCCATTCTCAAATAATTCTCCCTTGCATCTTTTCTTGACAACTGTCTCTTTATACATCTAAAGGGACTGGAAACTGTGGTGAGAGATAATTAGACAGCGAAGGCTTCACTTAGCCTACCAGAAGGGTAGGGAGTGCTTTTGTCATTTTATCTCTATTCTTTCTTTCCAGTCCCTTGATGACTGGGAGAGGTCAAGGACAAAGGGAAGGAACCAGGATTTCAGAATGGAATCCAGCCTTAGTCTCTAGGGTTGTGTCTGAGGACTCAATCATTGTGGGTTAATAAATAACTATGTAGGAGTAGGACCTAAGAACTCTGGTCAAGCAGGAACTACACCTGAGGCAGGGAGTCAAAGGTGAAGGGTCGTCTGAGGACTTCCTGGTTCATGGCCTCCACTACTTCAGTCGGTCTCGTCATGGCCCGGAGGTAAAACAGCTTATATGCAAGCCAAGTAACGTGTGACTAACACTGGAAATAAAACCATTTTATTTTCTATGTAATGTATGCGCACCTATTTCTATCCACTCAATCACCATCATGATCAGTAAAAACAGATCTATATAGAGGGAAATATAGTAGGAAAATGAAAGCATACTGTGATATGAATTgaacgagagaatacacacacccaCCTGCTTCTGTGCACTACCCCAATAGACCCTCCACGGTGTGTCAAACACCATCCTTTTAATTTTTGCACATACTTCACTCTGATTGGTGGatgttttttttacaatataaatgtatgtttttaatAATATGACCAATGGGGCTAACATTTCCTTACATTCACAAGCAAAGTCTTGCTTAACATGCAttctgaggatttttttttttattattatttttttgccaAAGAATATAGTGGCTGTAATTAATGTTGACGTTTCCTGTGAGAAAGACATACTGTAGCTATTATAATGCCTTGACTGATAGCATATTTGCAGGTTAAAGGATTTGGTTTGGATGCAGggttgtttaaaaatatatatatattccatttGTTCTGTCCATTATTATTACTGCACTACCTTATGTAATGTTGCACATAGTATGTGTTAATCATCCTTTTtcaatgcattttattttttaactctCAAAATAAGTCTATAATTTGTTGCAATAACTCATTTGATGAATTATGATTCCTAACTTGAAATGAAACAACAATATTTCTGTCCTGCTTCCATTACAATCTCTTTGATTTCGCATACCTTTTCTCTAAGCCTTTTGTCAAGGATCCAGTTTTATGTTCCTTCCATACCATTAACTTCTCTCTTTTGAAGACATCTAGAGAATTGAACTATTCTCGACCTACAGCTCTAAGGGGGTTTACGACATGTTTTGTACACAGTTGTTATTATTGAAATGATAGGTGTTACATTCTCGTTGTCCAATCATATTTCTGCTATGGAGTCATACAAATTGGGAGAACTTTAATGACCTAGGGTGTCAGTAGACTATTGACATTACAATGACTTTCAAATGTGATGAATCATTTGCTTATAAAACTGCTTTTGTATCCACTGTACAACACTGTGCCGTTAGACATTTTTCTATCCAAAGCAGACAGAATGGAATGAGCTTCTACTTAAGAAAAACTTAATTTAGGGTGTGCACTTAACTTGAAAATACAACTGTAATTGTTGTCTTCTGAATTGATACTATAAAGATGATCTTGGTTCACTGTACGTACTCTGATATACAACAAATGGAAATGATATCTGTTTAATGTCATAAGGCTTTGTTATTGTGTCTTTATCACCTTTATTGAGGACATTGTTTTCATGTTCATTAAACATGTCTGTACATGTTACTTTTTATTCCGCTCCTAATCAGCAATTCTGGTGCAATAATCTGCTCATAGCAAAGAGAAATAACTGATATTTAATGTTGAACTGGGAGTGTTATTTTTGATACACCATTAATTTAGTTTTCTGAAATGAAAATATTTAATAGATTCATGTTTTAAGGACATAGGTGGTTGAAGTACTTACTGCACTAATCTCATTGAAGTTCAATGCATGTTTCTCAAAGATGTCTGAAAAAAACACTGGTCAAATGTAATTTCATGGGATGGAAAGAGGGATGTATTGAAGAATCCAATCAGCTTTATTAAAACATGATCTAAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1352649 lncRNA downstream 64668 51377457 ~ 51378219 (-) True G1186113
TU1351799 lncRNA downstream 124288 51318273 ~ 51318599 (-) True G1185369
TU1351785 lncRNA downstream 147364 51295271 ~ 51295523 (-) True G1185355
TU1351783 lncRNA downstream 150080 51292541 ~ 51292807 (-) True G1185353
TU1351778 lncRNA downstream 152513 51289769 ~ 51290374 (-) True G1185348
TU1352686 lncRNA upstream 25403 51484290 ~ 51484518 (-) True G1186150
TU1352689 lncRNA upstream 28614 51487501 ~ 51487704 (-) True G1186153
TU1352615 lncRNA upstream 44288 51503175 ~ 51505681 (-) True LOC110486743
TU1352711 lncRNA upstream 74404 51533291 ~ 51533538 (-) True G1186175
TU1352718 lncRNA upstream 82115 51541002 ~ 51541418 (-) True G1186182
XM_021558564.2 mRNA downstream 1181 51427685 ~ 51441706 (-) True LOC110486741
XM_021558563.2 mRNA downstream 18314 51422590 ~ 51424573 (-) True LOC110486740
XM_036941444.1 mRNA downstream 30470 51405257 ~ 51412417 (-) True LOC110486738
XM_021558560.2 mRNA downstream 31616 51405257 ~ 51411271 (-) False LOC110486738
XM_036941439.1 mRNA downstream 113571 51324906 ~ 51329316 (-) True LOC110486734
XM_021558572.2 mRNA upstream 11203 51470090 ~ 51508651 (-) False LOC110486743
XR_005035586.1 mRNA upstream 44257 51503144 ~ 51507830 (-) False LOC110486743
XR_005035585.1 mRNA upstream 44257 51503144 ~ 51507874 (-) False LOC110486743
XR_005035587.1 mRNA upstream 60023 51518910 ~ 51522697 (-) True LOC118938316
XR_005035588.1 mRNA upstream 67727 51526614 ~ 51530761 (-) True LOC118938317
TU1352611 other downstream 68933 51352309 ~ 51373954 (-) True G1186075
TU1352616 other downstream 118956 51321800 ~ 51323931 (-) True G1186080
TU1351447 other downstream 661029 50780265 ~ 50781858 (-) True G1185046
TU1351422 other downstream 684843 50756638 ~ 50758044 (-) False LOC110485208
TU1351387 other downstream 814348 50626647 ~ 50628539 (-) True G1184986
TU1352690 other upstream 30890 51489777 ~ 51490241 (-) True G1186154
TU1352963 other upstream 466076 51924963 ~ 52028974 (-) False G1186381
TU1352758 other upstream 551803 52010690 ~ 52011211 (-) True G1186216
TU1352962 other upstream 567031 52025918 ~ 52030660 (-) True G1186381
TU1353318 other upstream 1200444 52659331 ~ 52659809 (-) True G1186670

Expression Profile