RNA id: XR_005035586.1


Basic Information

Item Value
RNA id XR_005035586.1
length 1220
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC110486743
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51470090 ~ 51508651 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAACTGGACCTCAATAAAGACGGTAAAGTCGACGTCAACGAGCTGAGGATAGGACTCGCTGCACGCGGTTTACTTCGCAGTGACGCGGAGGAGCCCCCTACATTGAGTCTGAGAACTGACAGCAAACAGCTGATATGAAGGAATGTTGTCCACAAAAGGAGTTCTGGCAACCCCCGCAGCAGGAATGCCATGATACAAAATCAGCTTTCCCAAGATAAAGGGGCCTGTGAagacagaaaaaaagaaaagggGATATGCTGTAAAGCCTGTGAAGACAGACCAAAGAAGGGGGGATATGCTGTAAAGCATGTGAAGACAGACCAAAGAAGGGGGGATATGCTGTAAAGCCTGTGAAGACAGACCAAAGAAGGGGGATATGCTGTAAAGCCTGTGAAGACAGACCAAAGAAGGGGGAAATGCTGTAAAGCCTGTGAAGACAGACCAAATAAGGGGGATATGCTGTGAAGCCTGTGAAGACAGACCAAAGAAGGGGGATATGCTGTAAAGCCCATGAAGACAGATCAAGTGAAGACAGACCAAAGAAGGGGGATATGCTGTGAAACCTGTGAAGACAGACCAAAGAAGGGGGGGTTATGCTGTGAAGCCTGTGAAGACAGACCCAACCAAAACTGCTACATAGACAGGCTCCTGGATCTCCTCTTCAGCAAGGTCACCCTTGATCCAGTGCCGTATGTGGGGAAGATGTGCGAGCTGTCCATCCCAGAACCCGTCTGCCCAGTGTGAGAGGCCTGACAAGGAGGAGACCATACCTGGTTTTGTCTCCAGCATCAATCTTCGGGGTGACTGAAGTCAAGTGGGTGACTGAAGCCTGCTTGATTGAAGCAGGTTACATGGTCCCCCTCCTCTCCCGATCCCGTCCCATCAATCTCTGTAGTTGGTTGCATTTCCCAAAGTCTAAGTAATTTATATGATATCACATTTTATTTTACATAGTTTTTTCTAACATTTGGACGGGAGATGAGAGTTACAAATTGTAAGACTCAATGGGGTCCTGCACACTGTAGGGCAGCAGGGTGCCTATATTGCGGTTTATGGctctatttgatttatttttttatgtcaAATGATGTCTCACCATTATTTCTTACCTTTATTTCTCATGAATGTCCATGTTGATCAATATTTCAGATATGCTTGCCTAATGTAAATTAACAAATAAATGTCTGATCAATACATACAATTCTGAACATATTGTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1352689 lncRNA downstream 15440 51487501 ~ 51487704 (-) True G1186153
TU1352686 lncRNA downstream 18626 51484290 ~ 51484518 (-) True G1186150
TU1352649 lncRNA downstream 124925 51377457 ~ 51378219 (-) True G1186113
TU1351799 lncRNA downstream 184545 51318273 ~ 51318599 (-) True G1185369
TU1351785 lncRNA downstream 207621 51295271 ~ 51295523 (-) True G1185355
TU1352711 lncRNA upstream 25461 51533291 ~ 51533538 (-) True G1186175
TU1352718 lncRNA upstream 33172 51541002 ~ 51541418 (-) True G1186182
TU1352719 lncRNA upstream 36226 51544056 ~ 51544359 (-) True G1186183
TU1352728 lncRNA upstream 45588 51553418 ~ 51553632 (-) True G1186189
TU1352594 lncRNA upstream 74032 51581862 ~ 51585545 (-) True LOC110486760
XM_036941445.1 mRNA downstream 38326 51442887 ~ 51464818 (-) True LOC110486742
XM_021558565.2 mRNA downstream 44257 51442887 ~ 51458887 (-) False LOC110486742
XR_005035587.1 mRNA upstream 11080 51518910 ~ 51522697 (-) True LOC118938316
XR_005035588.1 mRNA upstream 18784 51526614 ~ 51530761 (-) True LOC118938317
XM_021558574.2 mRNA upstream 51837 51559667 ~ 51562465 (-) True timm29
XM_036941446.1 mRNA upstream 59130 51566960 ~ 51581205 (-) False carm1
XM_036941447.1 mRNA upstream 59130 51566960 ~ 51581205 (-) True carm1
TU1352690 other downstream 12903 51489777 ~ 51490241 (-) True G1186154
TU1352611 other downstream 129190 51352309 ~ 51373954 (-) True G1186075
TU1352616 other downstream 179213 51321800 ~ 51323931 (-) True G1186080
TU1351447 other downstream 721286 50780265 ~ 50781858 (-) True G1185046
TU1351422 other downstream 745100 50756638 ~ 50758044 (-) False LOC110485208
TU1352963 other upstream 417133 51924963 ~ 52028974 (-) False G1186381
TU1352758 other upstream 502860 52010690 ~ 52011211 (-) True G1186216
TU1352962 other upstream 518088 52025918 ~ 52030660 (-) True G1186381
TU1353318 other upstream 1151501 52659331 ~ 52659809 (-) True G1186670
TU1354707 other upstream 2099194 53607024 ~ 53637813 (-) True mosmoa

Expression Profile