RNA id: XR_005035587.1


Basic Information

Item Value
RNA id XR_005035587.1
length 1860
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC118938316
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51518910 ~ 51522697 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGTCATATACTGGCATTTTACTTCAAGCCTTTCTGAAACAAATGCAAAGAATGTAATTGAATTCATATAAGAACTACACACATTACCTCTGAATGGTTGAgtcttgtgttttttttgttgcataatatatatatatatttttaccaatAGATCAATAAAAACGAATTGCATGATGTGAATTGAATGGCCATAAATCAACATAATCCATATAACTGAATTAATATGTTTTTAATATTGTGAATGGTGCTCATTGACATTTTTCATTCATTCTTTATAGACCCTTCAATCCTTTATTGTCTTTTAGACCCTGCGGTCCATGTTGGCGACCGTAAAATGGGACAAATGAATCAATAAGGAGGTCATCCCACCACATGTAGCCACAGGCCACAGCAACCCTGTCATTCAAGTCACTGGTGAGGAGCAGGGTTATCACTCGCCTCCATCTACTACCTCAACCAATGACAATGCTGTGTTGAGCCAACCCCCTCTGACACGCCCAGCCAACCAGAGCTCAGTCATTCATGTACAAGAGTGCATATTGTCAACTAACTAAGTATTGTGTAGATGACAGAGTGGGActaggaagacacacacacacacacacacacacacacacacacacacacacacacacacacacacactcacctaacTCTCAGACTCCCGCGCCAGAATTAGACACACTTGGCACCAGCATATCTAGGCTCCACCCAACCACAACCCAAGCTTGAGTTGTTACTGCATCTCCAAACCCGACAGTCAGTTCTTTATCATCAATACTATTAAACCGTGGCCTTCTCTTAATGAGATTTATAGGCGTGGCTTTCACAACGTGATCTGCCCTCTCAGTCTGCTGTGATTGATCACTGTGTGTGGGTCCCCTTCGTCTCCACAGACTGAGAGTGAATTAGCTATTGATCCCGGCATGGGGTCACTGTGTGTTATAGGACAGGACTGGAAGTGTGGTTTGTGGGGTGTGAAGACACTCCTACTGCTTAAAGTCATGGAATGATAGTTTCCTCTTAGTGTTATTGAGGAGATGATGAATTATATAACAGGAAATATTTGAAGCCACTGTATGTTGGTTGACTATGGATCAGGGATGGATGCTCTTCCACTGGCTACTACAGTATACAGTGGTGGTgatatggatgtgtgtgttcaTCCAGATCCTCAGGGCTTGGTCCTGAGCAGACAGAGAGTACAGAGTGGCAGCAGTCCAGGCCAAGCGGGCAGGAGACATGGAGCTAGCCAGACGTTACTATCGGACAGCAAAGaaaTTAGAGGTGATGGTTGAAGAGGCATCTGAGAGGAGTGAGTGGTCATCAGCTCTATACCACCCCTCCTGacGAACCACTcaaacaacagacagagacagacaccagccTCAGTCACATGACTTGTCCTGCCAGTAAGAAGGAGCCTCCTGGCAGCATGATCATGATGTCAAGAACAGAAGACAAGGTACAAGTCCACTCCCAGCCCCTCCCAGTGCCTCCTGGAGCCTCAGACCAgtacaaccagctgatagaggtCCTCACACAGCAACAACGGaaGTGTCTGTGCCAGCAGTTCACCCACATGGGGGAGATCACTGAGACAACTAGGTCTGTACTGGCCCTTTTCATTACCTCTTGTGCATTGATAAACGATATATAAGTTATATAACGGATAGCAGACAGGTGGACATGTGCTGCCTTAGGACAGGTCAGACACGCAGAACGACACCGTTGATGTGAGAATGTGTATTGTTTAGACAGGTTGGAGGTGCTGTCAGAGGGGTGTAGGAGACACCTGGAGGTCGTGAAACAGGTACAGAGTAGAGGACACCTGTTACCCCCATACACAGAGGAACGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1352615 lncRNA downstream 13229 51503175 ~ 51505681 (-) True LOC110486743
TU1352689 lncRNA downstream 31206 51487501 ~ 51487704 (-) True G1186153
TU1352686 lncRNA downstream 34392 51484290 ~ 51484518 (-) True G1186150
TU1352649 lncRNA downstream 140691 51377457 ~ 51378219 (-) True G1186113
TU1351799 lncRNA downstream 200311 51318273 ~ 51318599 (-) True G1185369
TU1352711 lncRNA upstream 10594 51533291 ~ 51533538 (-) True G1186175
TU1352718 lncRNA upstream 18305 51541002 ~ 51541418 (-) True G1186182
TU1352719 lncRNA upstream 21359 51544056 ~ 51544359 (-) True G1186183
TU1352728 lncRNA upstream 30721 51553418 ~ 51553632 (-) True G1186189
TU1352594 lncRNA upstream 59165 51581862 ~ 51585545 (-) True LOC110486760
XM_021558572.2 mRNA downstream 10259 51470090 ~ 51508651 (-) False LOC110486743
XR_005035585.1 mRNA downstream 11036 51503144 ~ 51507874 (-) False LOC110486743
XR_005035586.1 mRNA downstream 11080 51503144 ~ 51507830 (-) False LOC110486743
XM_036941445.1 mRNA downstream 54092 51442887 ~ 51464818 (-) True LOC110486742
XM_021558565.2 mRNA downstream 60023 51442887 ~ 51458887 (-) False LOC110486742
XR_005035588.1 mRNA upstream 3917 51526614 ~ 51530761 (-) True LOC118938317
XM_021558574.2 mRNA upstream 36970 51559667 ~ 51562465 (-) True timm29
XM_036941446.1 mRNA upstream 44263 51566960 ~ 51581205 (-) False carm1
XM_036941447.1 mRNA upstream 44263 51566960 ~ 51581205 (-) True carm1
XM_021558579.2 mRNA upstream 59164 51581861 ~ 51585591 (-) False LOC110486760
TU1352690 other downstream 28669 51489777 ~ 51490241 (-) True G1186154
TU1352611 other downstream 144956 51352309 ~ 51373954 (-) True G1186075
TU1352616 other downstream 194979 51321800 ~ 51323931 (-) True G1186080
TU1351447 other downstream 737052 50780265 ~ 50781858 (-) True G1185046
TU1351422 other downstream 760866 50756638 ~ 50758044 (-) False LOC110485208
TU1352963 other upstream 402266 51924963 ~ 52028974 (-) False G1186381
TU1352758 other upstream 487993 52010690 ~ 52011211 (-) True G1186216
TU1352962 other upstream 503221 52025918 ~ 52030660 (-) True G1186381
TU1353318 other upstream 1136634 52659331 ~ 52659809 (-) True G1186670
TU1354707 other upstream 2084327 53607024 ~ 53637813 (-) True mosmoa

Expression Profile