RNA id: XM_021558573.2


Basic Information

Item Value
RNA id XM_021558573.2
length 2252
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC110486745
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51562364 ~ 51566331 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACACAGGATGGTTGTGTACATAAGGTGACGTGGAACAGGCGAGTGATAATGTGAATTTAGTGCACCGTGGTTGAAATTAAcaccattagctagctagtttattcAGACATCCAACGCAGTACACGTTTAAAAAAAGATTTAACTATGTGCTGCTGTTGTTAGGTGAGTTGCTATTGAGATATAAAGCGAGAAAACAGTGCTAGCTCGACAGCTGTCAGGCTAGCGAGGTGGTCGTGTCAGCACTGCTAACATAGCTGACTGGCTCGCATTGCGGATAAAACACAACAGAACCTCCTGCAACAAACAGGTCTTGCATGAGGTGGTCATCTTTCCAGAGTTACCATGGCGAGTCCAGATGATCTGAAGTTCCAAGAGTTTGAGGAGGCCACTGACCTGCTGTTAGCAGACCCTGGGGCCTCCACCCTCAGTATGTCTGGCTCCAGCAGTACGTTCCCGGCCGGTGCCACTGGGGACATCAAACTGGACATGTCCGATGATGAGGGACAGGAGGAGAGTTCAGAGCTCCTAAGAGGGGAGAAACAAACTAGCGGTTTCTGGACCTTTGAGTACTACCAGTCATTCTTCAATGTGGATACAATGCAGGTGCTGGACAGGGTCAAGGGGTCGGTGATGCCTTTACCAGGACGGCACTTTATCAAACATACCCTCCAGTCGAGTCCGGATTTATATGGTCCCTTCTGGATCTGCGTGACGCTGGTGTTCTCTCTGGCCATCAGTGGAAACCTGTCCACCTTCCTGAACTCTCTGGGGAGCCCCCATTACCACTACAGACCCCAGTTCCACAGAGTGACAATAGCTGCAGTAGTGATCTTCCTGTATGCCTGGCTGGTGCCCCTGGGTGTATGGGGTTTCCTGAcctggaggcagagggaggagcgGCAGCAGAGTGGTTACTCCTTCCTGGAGACAGTGTGTGTCTACGGCTACTCCCTCTTCATCTACATCCCCACCTCAGTGTTGTGGATCTTACCATTCGAATGGCTCCGATGGCTCCTCATCCTGGTCGCCATGGTGATCTCTGGGTCGGTCCTGGTGCTCACCTTCTGGCCTGTCGTCCGCGACGACACCAAGGTGACTGCTTTTGCCACTGTGGCAACAATCGTCGTTCTCCATGCGCTGCTATCAATTGGCTGCAAGATGTATTTCTTCCAGACAGCGACTCACACACCAGTTCCTACACTCGCACCCAACCACACAGCAGCAGTATTGACCAACAAGACCCACTGACCAAGAGgaaccagagggagggagatgtgtCAATGTTTGAGACCACTGGGGAATCTGAAAGGACTAGATAAAAGGTTTAGGCGCCTGCATACTCTGATGCTCTAACCAATAATAAGGATAGAGGACTGACAAGTGGTCAGAAAGGTACCCATAACGTTGTGTTGGAGGTTCTGGATATGTGAGATATCCTACTCTAGTACATTATGGACTTAACTGGATCAGCAGCCCATTAAAGTACTGTGTAATTGACTACAAATGTTATTACAAAGAGAAGGGACAAGGATAGAGGCCTATGAGTATAAACAAGTTATGGGTTATGAGGATTGCATTGGGGGGAAATGTTTTGCTTCTGCTGCAGAAATGATTCCGCACTTGTATATTGTAATAAATCAATATTTATCATGGAGAAGGTGGGTGTACCTCAATAGTCGGGAGACTTCCTCTTATCTAATTTTATCTGCACTAAAAAACATAGGAAAGGAGGAAGCATGAGATCTGCTCTAACCAGCTCAGTTCTGTCAGTGCAGATAGATACAAGGAAAGGAATTATTTTTTAGACTTGAAATCCTCAGCTGCAGTCTGATCTTGAGATGAACCTATTGAAGGGAAATGCTGTATGAATGTTTAACTAATGTACTAATACAGGGGTGGCCAACCTTACCCATAAAGGTGCATGCTTTTGTTCCAGCCAAGCAAAAACACCTGATTCTACCATCAGACGAGTTGGATCAACAGGTATGTTACAGCTTGGCTGGAACCAAGGCCTactacacccacaccagccctctGTGGGTGAGGTTGTATACCTCAGAGAAAAAAAAGGGTTGTTCTAGAACTCAAACTACTCCTATGACCTGGAACGTGTAGTACTGTGCTGACTAATGTATCCAGACCACTTTTTCTTTTTGTAGATAGACTTGTAAATTAAGGAAAGGGTTTGtcagtgtatttatttattctttgTTCACACTTCTGGGTTTGTGATTAAACTGTCATTTCAGTC

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K22940 YIPF1_2; protein YIPF1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1351993 lncRNA upstream 997 51559721 ~ 51561367 (+) True G1185534
TU1351956 lncRNA upstream 8428 51553700 ~ 51553936 (+) True G1185510
TU1351955 lncRNA upstream 9046 51553108 ~ 51553318 (+) True G1185509
TU1351953 lncRNA upstream 11139 51550964 ~ 51551225 (+) True G1185507
TU1351951 lncRNA upstream 12835 51549314 ~ 51549529 (+) True G1185505
TU1352024 lncRNA downstream 7690 51574021 ~ 51576755 (+) True G1185564
TU1352040 lncRNA downstream 37739 51604070 ~ 51720989 (+) False G1185578
TU1352041 lncRNA downstream 154254 51720585 ~ 51720989 (+) True G1185578
TU1352088 lncRNA downstream 165630 51731961 ~ 51736516 (+) True G1185623
TU1351979 lncRNA downstream 213066 51779397 ~ 51938068 (+) True LOC110486748
XM_036941441.1 mRNA upstream 157784 51394438 ~ 51404580 (+) False LOC110486737
XM_036941442.1 mRNA upstream 157784 51394440 ~ 51404580 (+) True LOC110486737
XM_036941443.1 mRNA upstream 159836 51394436 ~ 51402528 (+) False LOC110486737
XM_021559466.2 mRNA upstream 168251 51391860 ~ 51394113 (+) False LOC110487554
XM_036941440.1 mRNA upstream 188373 51344378 ~ 51373991 (+) False LOC110486735
XM_021558577.2 mRNA downstream 19915 51586246 ~ 51590496 (+) True LOC110486751
LOC118938087 mRNA downstream 197250 51763581 ~ 51764616 (+) False LOC118938087
XR_005035589.1 mRNA downstream 217557 51783888 ~ 51822874 (+) False LOC118938318
XM_036941448.1 mRNA downstream 217557 51783888 ~ 51823957 (+) True LOC118938318
LOC118938088 mRNA downstream 274121 51840452 ~ 51852886 (+) True LOC118938088
TU1351876 other upstream 115807 51445907 ~ 51446557 (+) True G1185436
TU1351847 other upstream 170282 51384172 ~ 51392082 (+) True LOC110487554
TU1350772 other upstream 575798 50985813 ~ 50986566 (+) True G1184435
TU1350149 other upstream 1678929 49882821 ~ 49883435 (+) True G1183875
TU1350070 other upstream 1727350 49832221 ~ 49835014 (+) True G1183819
TU1351980 other downstream 61351 51627682 ~ 51628676 (+) True G1185521
TU1351986 other downstream 85282 51651613 ~ 51653770 (+) True G1185527
TU1351981 other downstream 127552 51693883 ~ 51695058 (+) True G1185522
TU1351994 other downstream 131545 51697876 ~ 51698646 (+) True G1185535
TU1352079 other downstream 151417 51717748 ~ 51718204 (+) True G1185616

Expression Profile