RNA id: XM_021558579.2


Basic Information

Item Value
RNA id XM_021558579.2
length 2105
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC110486760
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51581861 ~ 51585591 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agcactTGAGTCGCAGCGGCCTCATCAGAAAATCTCGTTCTTTCAAGTGATAGCCGGACACTTTCACTTGGCCGTTGGACAGACCTCGCAGACATGTCGAATAACAGCGCAAACAGCAGCAACTTGGTTATAGCTCAGAAGGTGGTAAAACAACTTCGCCTAGAGGCGAGTGTTCGCAGGATCAAGGTGTCCCAGGCAGCAGCGGACCTGAAGACCTTCTGCCTGCAGAACGCCCATAAAGACCCTCTCCTCATGGGGGTGCCCTCCAGCGACAACCCCTTCAGACCCCCCAAGTCCTGCGCCCTCTTCTGAGGCGATGGTGATGATGGAGGCTTGTAAAACACGTCTGAACATTCCCCAAGGATGCCTTTCAGTTCCAAGCCCCTGGCGTCTCCTACACCCTTCCCCACCACGTCCAGTCACTGAAGACCTCAAGGCCAGAACACAATCACAGGCATTAACCCTATGCTGAGTGAGTTTTGacatgtgttctgttctgttctacagcTCAATAAGGATAACATTTGCAGTCCTTTGTGTGTTGAGATCATTAGAATGAAAGCACTCCTCAAAGTATAAATATGGCAGTCTCTCCCTGTAGTCTCTAccttttgttacttttattttactCAAAGTGAAATTGAACTGTATTAGGTTTTACATATTGTTGTTGGTGAGTCTTTTAAAGTGGTTGACCAAGTGCCATTACATGAGTATAGCCTACCGTATCATTGTTGTGAAGCTACTGTATGTTCAACACACTACAAGATATTACACCTGAGTTTGATCTCAGAGCTTGTTTTTCAAAATGGTGCTCAGTTGGTTGCAAACACAATGCAAAGTTCCACACAAGCTCGCCTTAACACTGTCACTGTGATTTTTGTCAGATGAAATTGTGAAGCATTTCAATAAGTGTAATTTATGATTCTCTGCTAAAAGTGTGGTGACTCCATGAGCCTCAAGAGAATTTAGTCTTTTGACAGAAATTTTGCGCGCATTCTCATGTGTTAAACACTCGACTACACTGTTAAGATCCTCAGTTGACAGTTAAACCACTGTGATGCAACATTTAATTCAAAAGAAAATGGTGTTACTATGTCTTGAAAAGAGTGACTCAGATGTTAGAGGTTTCTTATGGGTGTTGGCATATAGAGATCTCAAACTCAGGTCATGCAAAATATCTGTTTCAATGCTGGTTTTGTGGTGTTGCTCAGTCAACATCAGAATAATGATATGAAGGATCATAACAAGAATATTAGGATTACTGTACTGACACTATAGATAAGTATAATTGCTGTGTATCATCATTATAAATAAGCCTGATCTTAGGACACTCAGTGGAAGGGGACTGCTACTCCATTGGTGCATCTACGTTAAAGTAAGGACACATTCTAAATGGTTTAAAGTCATTTTTTGGGTTCCCCACCCCTTTTACCTTTTACTCTTTGCGTACTGCTTCAAACTAATGTGCCTTAGTATGTGCCAAACCTCTGGTAATTTAAATGCCCCGGTTTTAACACGAGACCTGTTGAGGCCTAAATCTGCAGGACCTGAAGAAGTTGAAAAACAACACCAGAGAATGAGTCATGTTTAGGAACCATACTGTGTTCTTATTACAACATGAAGTGTTGCTAAAAACTGGAGAACAGCCCTTCAACATGTTCCAATACCCAGAAACATGTCTTCAATAATGTCCTCAGACTTGTCCACTGATAGGTGAAAGGACTAGGCCTACATAGATGTTCACAGTACTATTAGTCTTGCCTACCAAGTCCTTTCAAATCAGTGGCCATGCAGGAAAGGAGATGGAGGAACGCAAGCTCTTTTCACTATGGTGACAGAGACTGATCTCTGAATTCCTCTGACGTTATAATAAAGTGAACAGAGAACCTTTGAGGACTACAGTGTCCATAATGCATGGGGAAAGCAGAGCACCTCTTTTTACAAATATTAGTCACTGAAATGCTCTGGTGGATGGATTCATACATGTGGAAAACACTGTCATCCTCTTGTGCCTTAACGTTTattttgtgtgtatttgtcttaGAATGGTACCATGACATGTATTGActgaaaaatgtaataaaatgtataATTTCACCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1352728 lncRNA downstream 28229 51553418 ~ 51553632 (-) True G1186189
TU1352719 lncRNA downstream 37502 51544056 ~ 51544359 (-) True G1186183
TU1352718 lncRNA downstream 40443 51541002 ~ 51541418 (-) True G1186182
TU1352711 lncRNA downstream 48323 51533291 ~ 51533538 (-) True G1186175
TU1352615 lncRNA downstream 76180 51503175 ~ 51505681 (-) True LOC110486743
TU1352754 lncRNA upstream 40071 51625662 ~ 51626441 (-) True G1186214
TU1352621 lncRNA upstream 42140 51627731 ~ 51628433 (-) True G1186085
TU1352770 lncRNA upstream 45197 51630788 ~ 51653059 (-) True G1186222
TU1352772 lncRNA upstream 46103 51631694 ~ 51649513 (-) True G1186224
TU1352764 lncRNA upstream 91427 51677018 ~ 52073988 (-) False G1186218
XM_036941446.1 mRNA downstream 656 51566960 ~ 51581205 (-) False carm1
XM_036941447.1 mRNA downstream 656 51566960 ~ 51581205 (-) True carm1
XM_021558574.2 mRNA downstream 19396 51559667 ~ 51562465 (-) True timm29
XR_005035588.1 mRNA downstream 51100 51526614 ~ 51530761 (-) True LOC118938317
XR_005035587.1 mRNA downstream 59164 51518910 ~ 51522697 (-) True LOC118938316
XM_021558575.2 mRNA upstream 6568 51592159 ~ 51601611 (-) False LOC110486749
XM_021558576.2 mRNA upstream 6568 51592159 ~ 51601612 (-) False LOC110486749
XM_036941454.1 mRNA upstream 6568 51592159 ~ 51607002 (-) True LOC110486749
XR_005035767.1 mRNA upstream 515294 52100885 ~ 52101957 (-) True LOC118938556
XM_036939765.1 mRNA upstream 570049 52155640 ~ 52331576 (-) False LOC110485216
TU1352690 other downstream 91620 51489777 ~ 51490241 (-) True G1186154
TU1352611 other downstream 207907 51352309 ~ 51373954 (-) True G1186075
TU1352616 other downstream 257930 51321800 ~ 51323931 (-) True G1186080
TU1351447 other downstream 800003 50780265 ~ 50781858 (-) True G1185046
TU1351422 other downstream 823817 50756638 ~ 50758044 (-) False LOC110485208
TU1352963 other upstream 339372 51924963 ~ 52028974 (-) False G1186381
TU1352758 other upstream 425099 52010690 ~ 52011211 (-) True G1186216
TU1352962 other upstream 440327 52025918 ~ 52030660 (-) True G1186381
TU1353318 other upstream 1073740 52659331 ~ 52659809 (-) True G1186670
TU1354707 other upstream 2021433 53607024 ~ 53637813 (-) True mosmoa

Expression Profile