RNA id: XM_036941454.1


Basic Information

Item Value
RNA id XM_036941454.1
length 5057
RNA type mRNA
GC content 0.45
exon number 10
gene id LOC110486749
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51592159 ~ 51607002 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAGACAACAAGTCAGCAGGAGAACAGAAGTAAATATGAACTCTGAGGGATCTGGATTTACATCATGATGTCATGGAGGAGGGGCTGATGAATGAGAGATGGCCAGCCAGAGCGAGGTGATTGACAGGTTGAGGGCTACATTCCGGTCAGGTGTGACCTTTCCAGAGCCGTTCCGTATGACCCAGCTCCAGAACCTTCTGTCCCTGGTCGAAGAAAACGAGCAGCTGATACAAGATGCTCTCCACAAGGACCTCCATAAGccCAAGTTTGAGTCGGTCCTGTCAGAGATTCAGATAACCCTGAATGACCTGTACTTCGCCATGGAAAACCTCAGGACCTGGATGCAGCCGGAATACAACATTGGCAAGAATCTGGCCACTAGGATGGATGACTGTTTCATACGCAGGGAACCCTTGGGGGTAGTTTTAATCATCGGGGCGTGGAACTACCCTCTACATCTTATTCTCTTACCTTTGGTTGCTGCAATTGCTGCAGGAAACTGTGCCATTCTGAAGCCGTCAGAGATCTGTCAGGCCACCGAGCAACTCCTGGCAGAACTCATCCCCAAATACCTGTCTCagGACTGCTATGCAGTACTATGTGGTGGAGCAGAGGACACCAAGTCATTGCTGAAGAATAAATTTGATCACATCTTCTACACAGgTTCCCAGGTGGTGGCCCGCTCCATCCTGCTAGCGGCGGCGCCTCACCTGACCCCCGTCACCCTGGAGCTGGGTGGCAAGAGCCCCTGCTTCATCTACGGCCATATCGACATCCATAAGGCCGCCAAGCGCCTGTGCTGGTCCAAGTTCTTCAACACTGGCCAGAGCTGTGTGGCACCTGACTACGTCCTCTGCACAACCCAGACCCGGGACGCCCTACTGCCCGCTCTCCGGGAGACCCTGCGGACCTTCTATGGGCCGGACCCCGGAGCGAGTCTGGACATGGGGCGCATAGTCACCCCACGCCACTGGAGACGCCTGATGGACATGCTAGAGAAGTCCAAGGGGAAGGTGGTGATCGGAGGGGAGAGCCGTGAGGAGGACAGGTATATTGctcccacAGTGTTGGTGGACGTGCAGGAGTCTGATGCTCTAATGCAGGAGGAGATCTTTGGCCCCATCCTGCCCATCCTAACCATAGAGTCTCTGGAGGAGGGCATAGACTACATCAACCGGCAAGAGAAACCCCTGGCCCTCTACGTCTTCTCTGACGAGACCTCGgtggTTACCACAGTGTTGAACAACACCAGTAGTGGTGGTTTCTGCGGCAATGATGGTATAGTACACATGGCCTTGCCAGGCCTGCCCTTTGGAGGAGTAGgTGCCAGTGGGATGGGTAGCTACCATGGCCGCTGGGGCTTTGAGACATTCAGCCACAGGCGGGGCTGTATGAACCGGAGCTGGTTGCTGGAGAGGGTCAACGTCCTGCGCTACCCGCCCTACAGCGACTACAACCTGGGCTGGTTGCGCTGGGCCACCACCTTCAAGAAGAACAGCTGGGGAGGCTGCTCAGTCATGTGAGAGTGGCACCCGGTGCGTGCCTGACTGTACTTCCAAAGCTGATGGGCTtttcttaaaggtccaatgcagccgtttttatctcaatgtcAAATCATTTTtggggtaacaattaagtaccttactgtgatttttcaattaaaatggccaaCAAGTAACatcttcttagcaaagagcaatttgtcaagaaagaatttagctaggactgccTGGGAGTTGTCTGAGCggggaggggaaaactagctgttggcagaggtttggatcttttattggtctattaactcatttaccgccTGGAGTTGTCACCAGGCATTCCAAGAGTCCCTTCCCACCTAAAtgggctgaaatttcaggcagtctttataaactgctcttacactaaaaggataTTATCatttttcacagtattattccaacatcATAGTGTGGAATGTATAAAACCGTTTTttttactgcactgggccttttaaAGTATCTGTCCAGTGTTCCAGATTtctattaaataatttacctAAAATGTAAAAAGATTAAGGATGTTAAAAACAGCTTATCTCTGTGGCCTGATTGGAAATAGTGGTTGGGTGTACTctggttaaaaaataaagaaaaaagcgCTGACATGCCAGCTCAGCCAATGAGATGCACAAACACTTGGATATTCAAATTAGCTACCAACGCCATGTGGGGCAGTGCTGTATGCACTGCCTAGCAGGCTTGCTTTCTTTTTTGGGGGGCCTTGGCTGTGTATAGGTTGCCTGCCCTGTCCACTAAGAATCCGAGTCACATTCTGCACGTTATTTTACGCACACTACATAACTGCTGCTCACACTCCCCTTCCTTTACGTTTCTCTCTTTACTCACCCCTTCTGGACTATGATGATGATCTCTGCCTTGTTtctgaacagctgaaataaaataaCTGCTGTAAATTGATCGAACAttccccaaaatattttttgaaGGCTAAACAACCTTCTCGGTTGTAACAGATATTTTAGTTGCACAAGCAGGACTCATTAAACTATCAGCGTTTTGTGTGATGTAGGCCCACCCATACTCAACTAGTGGACCGGATCGGTCGGGCTTCGATCCCTGGTATCATATAAACACACAGGACATGAAAGAATGCATAGAATTGCAGAATATTTGCTATACAAAAAGGCAAAAAATAATATTTGCCCcatacaaaatgtgtagaattgcaggaaattagctataaaactgcaacattttcaagATGGGTGTGAACAGATTGAGGTCGCATGGGTTGTGAGGTGGGGGTTTGTTACTACATCGATAAATGACATTATCCATCTGGACCATTTCggaaatgtgtgtgtgactggaccttctcaaatagtacttgagtacCCCTGATTAGGCTAATCTTCATAGTTACTGTCATATTGTAGTAGTACtgtaggagaatacaggagaagtACAATAGTAAAGTTCCTGGAAAAATAATGCAACTCCCCACTTAGAGTTTTGCATAGGAACTCTCTGTGTTTTCCCACACACAGGCCCTACTAACTGCTATTTCGCTTTTCAATGATCATGCAAGTACAGCATGAGTAGGGGTTCCACCTCTAGGCAGCCGAGCGTGTGAATCCGGACAGGTAACCTCAGTCTGACAATGGGCGAGTTCATTCTGTGGTGCACGTGTGCTATTATCTCTTGCATCGTTTGTCAACTACTgcctactatactgaacaaaaatatacacgtacattattttacaattttactgatttacagttcatataaggaaatcggtcaatttaaataaattccttAAACCTTAATctctggatttcacatgactggaggGCATATTCCCACCTacatgggagccaggcccagcccatcagaatgagtttttccccacaaagggctTTATTATGACAAATACTCTGCAGTTAATCGGCTGTCCAGTCCTGGGCTGGTTGCAcgtgcggttgtgaggccggttggatgtactgccaaattctctaaaattacgttggaggtggtttatggtaaataaattaacattacattttctggcaaccgctctggtggacattcctgcagtcagcatgtcaattgcacgctcactcaacttgagacatctgtggcaatgtGTTGTGATTACAACTGCAcatttagtggccttttattgtccccagcacaaggtgcaccagtgtaatgatcatgctgtttaatcagctgtcagatggattatcttggcaaaggataaatgttaactaacagggatgtaaacaaatttgtgcacaatttgagagcaataagctttttgtgcgaatGGAAATATTTCACACATTTTTGTTAATTATATTTGATTATAATTGTCATAGTTATGCTGCCATATCGTAGCAAGAGTTGCTGAAAAAAGAACTAGCCAATGTTTGCAATGAGAAAATAATTTCTATTTTGACTGCCTGTATATCGTACGTGTGTTTGATGTACCGTTACAACAGACAAAGTTTGTAGGAACATGTCGATCATGTTTTCTGTGTACAACATGATAGCTGCATGTTAGCCTAACACCCCTCCTgaaaaaataacatgaaattgcaCTTGAGGCATGGAATGCATAGTTTGAACAGGCCCACCATATCTTTAGTGTACAACACAACGTTTCCCCCATGTCAAGGAGGAAGTAGCGGCAGCAGAGCATGTTAGATTACTGCTTCTAAACAGCCAGCAGGCCAACTTACAAACCCCAGATTTTGAAATGGAAGTGACAGAGTTGTTGTATAGGGTTACTCCTTTTTGCTAACACAACCTGTGGATTGCTTGGCTTGTGTGCTGCAGTGTGCCCTCTCCATTAACTGTTTGTCACAAGTCAGTTTCAGTGGGCCTGTTTGGTTTGAGTACTTGAAAAGAAGGCTGTACTTGTATAGGGCCATTGAGTCAGCAGAAAAGAGCTGtgagaaagggggaaagaggtgCTACCTGTGGTTCTGGTTTAACCAGGTTATTCAAGGGAGGGACACAGGCTGCATCTCAAGTCTTGATTGGCTTCcttcccttgtctcctctcctttaccATGAAATGGAAAACTGAAGAAAGGTGAAAGTAATTTTTAGATGCCAATGGCTTTCACCTGTCCTGTTCTTTCAAATCTTTGCAGCTGAAGGGAAGGAGAGCCGCTATTGCAATCCACCCAGGGTGTGGTTTCAGTTCTGTGTTCACTGCTACATCACAATGGTCTAAACCTGCTTCATCCACTCGTCTTGCTTTGACCCATCAGATCAGATCAGAATAGATGAGTGGAAGCCACTATATTGAAATGTTTCCCCAGATTTTGAAATGCACTGGCTACCAGGGTCTGGAGAGGTAAAGGGTTTTTAGCACTGTTGCACAAGACCCCCATTGTTCACCATGGGGTTAGTATAGTTCACAGAACGGTCTTATGTAACAATTTTACTGGGTTTTGTTAGACTCTGTGTGACATATTAGGTGGTGGATGTTTTTGATTTTAAAAGTTTTGTTCAGAAGACATTAACTAATAAAACCTTACTTTACATGAA

Function

GO:

id name namespace
GO:0006081 cellular aldehyde metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004030 aldehyde dehydrogenase [NAD(P)+] activity molecular_function

KEGG:

id description
K00129 ALDH3; aldehyde dehydrogenase (NAD(P)+)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1352594 lncRNA downstream 6614 51581862 ~ 51585545 (-) True LOC110486760
TU1352728 lncRNA downstream 38527 51553418 ~ 51553632 (-) True G1186189
TU1352719 lncRNA downstream 47800 51544056 ~ 51544359 (-) True G1186183
TU1352718 lncRNA downstream 50741 51541002 ~ 51541418 (-) True G1186182
TU1352711 lncRNA downstream 58621 51533291 ~ 51533538 (-) True G1186175
TU1352754 lncRNA upstream 18660 51625662 ~ 51626441 (-) True G1186214
TU1352621 lncRNA upstream 20729 51627731 ~ 51628433 (-) True G1186085
TU1352770 lncRNA upstream 23786 51630788 ~ 51653059 (-) True G1186222
TU1352772 lncRNA upstream 24692 51631694 ~ 51649513 (-) True G1186224
TU1352764 lncRNA upstream 70016 51677018 ~ 52073988 (-) False G1186218
XM_021558579.2 mRNA downstream 6568 51581861 ~ 51585591 (-) False LOC110486760
XM_036941446.1 mRNA downstream 10954 51566960 ~ 51581205 (-) False carm1
XM_036941447.1 mRNA downstream 10954 51566960 ~ 51581205 (-) True carm1
XM_021558574.2 mRNA downstream 29694 51559667 ~ 51562465 (-) True timm29
XR_005035588.1 mRNA downstream 61398 51526614 ~ 51530761 (-) True LOC118938317
XR_005035767.1 mRNA upstream 493883 52100885 ~ 52101957 (-) True LOC118938556
XM_036939765.1 mRNA upstream 548638 52155640 ~ 52331576 (-) False LOC110485216
XR_005035590.1 mRNA upstream 579555 52186557 ~ 52189703 (-) False LOC110538721
XR_005035591.1 mRNA upstream 579555 52186557 ~ 52189703 (-) True LOC110538721
XM_036941458.1 mRNA upstream 808317 52415319 ~ 52430034 (-) False LOC110486769
TU1352690 other downstream 101918 51489777 ~ 51490241 (-) True G1186154
TU1352611 other downstream 218205 51352309 ~ 51373954 (-) True G1186075
TU1352616 other downstream 268228 51321800 ~ 51323931 (-) True G1186080
TU1351447 other downstream 810301 50780265 ~ 50781858 (-) True G1185046
TU1351422 other downstream 834115 50756638 ~ 50758044 (-) False LOC110485208
TU1352963 other upstream 317961 51924963 ~ 52028974 (-) False G1186381
TU1352758 other upstream 403688 52010690 ~ 52011211 (-) True G1186216
TU1352962 other upstream 418916 52025918 ~ 52030660 (-) True G1186381
TU1353318 other upstream 1052329 52659331 ~ 52659809 (-) True G1186670
TU1354707 other upstream 2000022 53607024 ~ 53637813 (-) True mosmoa

Expression Profile