RNA id: LOC110486748


Basic Information

Item Value
RNA id LOC110486748
length 2022
RNA type mRNA
GC content 0.48
exon number 7
gene id LOC110486748
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51779397 ~ 51941040 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAAAACCCTTTGCTCCTGTATGGACACATCAACACTGAACAGGTGAAATAATCACCCCCCAGGACAATGGAACCAATGTAAACGTAATGAAACTTAACTGAAGATTAATCCACCAACTCATAGAGAATATAATTCTGTAAGATTCTTTAGCTTCTTATACCTCACTGAGAGCAGAGTCATATGGAACCCCTATGGAGATGTGAAGGAGGTGTTTTTGTGCTGGGGTATATCACTGTGATATGGGCTGGGGGGCACTGTGAAATGAGGCTGTACAAAAACCTCAGAGACAGAACCTGCATTATATCTGCATGAGGATTGGGACAATGGGGAGAAACCATACAATATTCTTCAAATGACCATCTGATGTTGATATAACCCCATGTCATGACATGGACCTGAGCATGAGTTTTTAAAAGGTATTCAAAACTGAATTCACAACATCTGTCCTTATGGATTCAGGTGTATGATAGTATTACAATATTGCATTCATTTGAATGTTTATTGGATTCATTATCATGACTTTAAAGCGACCTATTTAGGTGCAGGGTTTTTGTACAGTCAGTGAATGGAGACAGAGCACTGTGATGCTTTTGACTACTGGGGTAAAGGGACACAAGTCACCGTCTCAACAGCAGCCACAACCCCCCCTACTCTACTCACTCTTATGAACTGTGGAACCCCTTCTAACGACATCTACAGCCTCGCTTTTGTGTCGCTAAAGGCTTCTCGCCTTCCTCACACACCTTCAAATGGACAGACGCCAGTGGGAAAGCGCTGACGGACTTTGTCCAGTACCCAGCAGTCCAGAGCGGGGAAACCTACACAGGAGTCAGTCAGCTCCGCGTGGCTAAGAATGTCTGGGAAAACTCAAAGTCTTTCAGTTGTTCTGTGGATCATGCTGGAGATGTAAAGACAGCAGTCATCAATATACCAATCTCAAAGCTTCCAACAGTGTCTTTGCTGTCTGCACCCATTGGCACCACCCAGTACTTGATGTGTATAATTGAAGATTTCACCCCCAAGAAAGTCATTGTCACCTGGAAGAAGAATGACATGGAGGTGGAGGGCCAGAcccctactgtaggcctacagccATCAGGCCTCTACTCAGCCAGCAGTCTACTGAAGGTCACCAACACTGACTGGAACAACAAGGTCAAGTACAGCTGTGTGGTGGAGCACCAGGGACAACCCACCAACGAGACGATCTCCAAAACAGAACCACTGACGGTGACTCTGAACCCACCGAGTGTGAAAAAGGTGTTCATAGACAACCAAGCAGTGCTGGACTGTGTCATCACTGCTACAGACCAGGACACAGTATCTGGTACCACTATCACCTGGCATGTCAACGGAAAGAAACAGAAAGATCACATTGATCTGAAACCTATTGAATCAAAGGGCAACCTGAACAGCAGGGTCAGTACTCTGACCATAGACCAGACAAGGTGGACCAATTTGAACAAAGTCCAGTGTTCTGCCATGAAGAGAGGTGAAGTCACACAGGTCATTCAGGACCTCAGCTTTAACAAAGGAAGTGAAGCCCCTTCTGTGTCCGTCCACATTCTCCCGGAGGAAGACACCAGGGAGAAGGAGATTGTGACTCTCGTGTGCCTGGTGGTCAGCCCGTCTCTCTGTGACGTCTACATCATATGGAAGGTGAACAGCGGTGATTACCAGGAGGGGGTCACCAGCCCTCCTCAGAAAACCCAGAAAGGCAACTATTCTGTCACCAGCGTCTTCACCACCACCAAGAAGGAGTGGGAGGGAAACTCGGTTTTCACATGCGCCGTCAAGCACCTTGGCTCGGACAACAATACCacacctgaggagaggagtgtgtCGAAGTCCTTGGCGAACATCCTCATGACTGAGCCTGAGGCGGCTTCGCTCTGAGCTGCACGGACAACTTTGAGGATGAGTTCAGCAGCCTGTGGTCCACCACTTCCTccttcatcatcctcttccttctctccctctcctacagcACAGGACTCAGCCTGGTCAAGATGAAGCAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1352183 lncRNA upstream 5588 51928861 ~ 51930454 (+) True G1185714
TU1352184 lncRNA upstream 6197 51925089 ~ 51929845 (+) False G1185714
TU1351997 lncRNA upstream 71752 51862593 ~ 51864290 (+) True G1185538
TU1352088 lncRNA upstream 199526 51731961 ~ 51736516 (+) True G1185623
TU1352040 lncRNA upstream 215053 51604070 ~ 51720989 (+) False G1185578
TU1352193 lncRNA downstream 15130 51956170 ~ 52023060 (+) False G1185722
TU1352194 lncRNA downstream 15728 51956768 ~ 52023060 (+) False G1185722
TU1352196 lncRNA downstream 16518 51957558 ~ 52023060 (+) False G1185722
TU1352202 lncRNA downstream 29933 51970973 ~ 51975692 (+) True G1185726
TU1352195 lncRNA downstream 80773 52021813 ~ 52023060 (+) True G1185722
LOC118938088 mRNA upstream 83156 51840452 ~ 51852886 (+) True LOC118938088
XM_036941448.1 mRNA upstream 112085 51783888 ~ 51823957 (+) True LOC118938318
XR_005035589.1 mRNA upstream 113168 51783888 ~ 51822874 (+) False LOC118938318
LOC118938087 mRNA upstream 171426 51763581 ~ 51764616 (+) False LOC118938087
XM_021558577.2 mRNA upstream 345546 51586246 ~ 51590496 (+) True LOC110486751
XR_002468108.2 mRNA downstream 11076 51952116 ~ 51954859 (+) True LOC110486763
XM_036941452.1 mRNA downstream 107104 52048144 ~ 52091683 (+) False LOC110485215
XM_036941451.1 mRNA downstream 124938 52065978 ~ 52091683 (+) False LOC110485215
XM_036941450.1 mRNA downstream 125092 52066132 ~ 52091683 (+) False LOC110485215
XM_036941449.1 mRNA downstream 125296 52066336 ~ 52091683 (+) False LOC110485215
TU1351984 other upstream 36326 51898956 ~ 51899716 (+) True G1185525
TU1352155 other upstream 54066 51881388 ~ 51881976 (+) True G1185687
TU1351990 other upstream 55089 51869301 ~ 51880953 (+) True G1185531
TU1351989 other upstream 88662 51830790 ~ 51847380 (+) True G1185530
TU1352103 other upstream 170118 51760793 ~ 51765924 (+) False LOC118938087
TU1351987 other downstream 22383 51963423 ~ 51965490 (+) True G1185528
TU1351973 other downstream 73491 52014531 ~ 52069615 (+) False LOC110485215
TU1351972 other downstream 105093 52046133 ~ 52069615 (+) False LOC110485215
TU1351975 other downstream 105665 52046705 ~ 52069615 (+) False LOC110485215
TU1351964 other downstream 107103 52048143 ~ 52069615 (+) True LOC110485215

Expression Profile