RNA id: XR_002468108.2


Basic Information

Item Value
RNA id XR_002468108.2
length 2330
RNA type mRNA
GC content 0.39
exon number 3
gene id LOC110486763
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51952116 ~ 51954859 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGAGAAGCCGTACAAAAAGCACTTCCCCATTCAGCACAGACAACCTCATTTATTTTTGATCAATGCTTTAATAGCTAAATGTTCACAAGCACCACTATACATTTGTTTTCACAAAATTACTTGATACATATAGTATACAGTAGGATTATCAATAATAAGAAAACAAAGATTAACCATCTTAGAGTTTCATCTCCCAtaagtgtagtgatagaaactgACACATTACCACAGAATGTCCCCCCATTTTGAACTGATGCTCCCAGTCCTTTATACCTGATTATCTTGATTCTGCTAATGtgatctaactctctctctccctgtccctcagcAGCTCACAACAGTTCGACTTCAATACAAACCATGTTCCCTGCATCTCTGCTGCTTCTGGCAGTTGCCTCCTGTGGCTACTGTGTTGTTGAACTTATCCAGTCTGGTCCAGTGGTTAGAAAACCAGGAGAGTCTCAGCATTATATTCTCAATGTCCTCGCTGGATATGACAAGCTGAAGGCAAAGCTTTGGAGTATGTTGGTTATACATGTATTAGTAGTACCTCCACTGTAGACTCACTGAAGATCAAGATCAGTTCTATATACAACAGCTCCAGCAGTACAGCGTTTCTACAAGGGAACAACTTCCAGACTGAAGACACAGCTGTTTATTACTGTGTCTGTGAGACACAGTGATACAAACCACAACCAGAGATGtacaaaaacatattttccagGGATTCATTGTATAACAGGACTAATTAAAATAAATAGAACATAGATGTTTCTCAATATGAAATATGTAAACGAATATAAGCCCATCATTAGCAGAGCTGGGAATGTATATCTGAGTTGTTTGCCAATTATACTCCTGATATGACTTGAAGGTATTCTAATTGATGTCTATCAAACGTTCAATGAACTCATTCATGATTCATTTCTTTAATGTTTTAATCATTCACATGATAAAGTTGTCCAGTACCGGACAAGAAGGTCTAAGTTCTgtggtatcaaaaatatgcaaattaTTATGATATAAATACAGATATATGCAACAATATAAAGACTGCGGACAATTGACACTAATTGGTTATGATACAAAAAATATTGTCAGAGTGTAAAGCTCAATGTATAAGAGTCCTGCCTAACATTATCCTCCAGCATCAGTCTGTTTTTTTCACGGAGAACACATTAGACTATGTATAGCTTGCACAGCTATTACGTATTTTTTCCCCTCCAGATATTCCCATTAATTATATATATCCTCTACTTATGCAAATTCTACCCagcctctcttcctttctctccctctacctcctatATAAAACCTCTCTGTATCTGAGAATCCCTGCACGTCCCTCTGAGTCCtggagagtagagaagagcaaCTCACACCAGTTCAGCTTCAGCACAAATCATGTTCCCTGCATCTCTGCTGCTGATGCTGGCAGCTGCCTCCTgtgTCCACTGTCAGGTCGTACTCACACAGGCTGAACAGTCAGTCCAGGGGAGCCCCGGGGGATCCCTCAAACTCCTGTAGTGTGCCTGTAGTGGATTTACTCTAAGCAGCACTAATATGTACTGGATCCGCCAGGCACCTGGAAAAGGACTTGAATGGATtgtttactattattctgacagtgACAAGAGCAATGCCCAGGTAGTACAGAGTAGATTCACAGCGTTGAAGGACAGCAGTAATTTCTATCTCCACATGAGCCAGTTGAAGCCAGAGGACTCTGCAGTGTATTACTTTGCTAGAGACTCACTATGGTTAAACTAATGAGAATAGTTGTACAAAAACCATCTGGTAGAGAAAGGAAGGACGTGTACAAACACATGACAAGGGGAAACATAAGGAACAATTCTAATGATGTATTAAATAATAACACAATGATACACCTGTTAAATACATGGTGCTAGTGTTGTTGATGCACCAACAGgggcccctctctctccatatgatTAAAATAAAGACCAGTACTGATGAAGGGTGTGCTATTTCATTTTATtacaggaaaaaaatatataatatggaTGGATGTTGATTAAATATACTTTACAGTTTGTCAAGATGAAAGTAAAGTGTCTTAAATATGTTTCATTCACCTTAAGTATTAACTAATACTTGAATGTAGTGTTTCATATCCCCCCTTCACATTCAAAAATATAACCGATAGAGGGTCTCTGGCTTAGGTTGTGTCCAGTTATAGATGTAATGCATCAATACATCAATGCAACCCACAGCCATTCATACATGTTTGTCTCTTTGTATACAGGACACCAAACAATGTGTTacgtcagttgttttaccattgtgttagtcagttgttttcctattg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1351979 lncRNA upstream 14048 51779397 ~ 51938068 (+) True LOC110486748
TU1352183 lncRNA upstream 21662 51928861 ~ 51930454 (+) True G1185714
TU1352184 lncRNA upstream 22271 51925089 ~ 51929845 (+) False G1185714
TU1351997 lncRNA upstream 87826 51862593 ~ 51864290 (+) True G1185538
TU1352088 lncRNA upstream 215600 51731961 ~ 51736516 (+) True G1185623
TU1352193 lncRNA downstream 1311 51956170 ~ 52023060 (+) False G1185722
TU1352194 lncRNA downstream 1909 51956768 ~ 52023060 (+) False G1185722
TU1352196 lncRNA downstream 2699 51957558 ~ 52023060 (+) False G1185722
TU1352202 lncRNA downstream 16114 51970973 ~ 51975692 (+) True G1185726
TU1352195 lncRNA downstream 66954 52021813 ~ 52023060 (+) True G1185722
LOC110486748 mRNA upstream 11076 51936042 ~ 51941040 (+) False LOC110486748
LOC118938088 mRNA upstream 99230 51840452 ~ 51852886 (+) True LOC118938088
XM_036941448.1 mRNA upstream 128159 51783888 ~ 51823957 (+) True LOC118938318
XR_005035589.1 mRNA upstream 129242 51783888 ~ 51822874 (+) False LOC118938318
LOC118938087 mRNA upstream 187500 51763581 ~ 51764616 (+) False LOC118938087
XM_036941452.1 mRNA downstream 93285 52048144 ~ 52091683 (+) False LOC110485215
XM_036941451.1 mRNA downstream 111119 52065978 ~ 52091683 (+) False LOC110485215
XM_036941450.1 mRNA downstream 111273 52066132 ~ 52091683 (+) False LOC110485215
XM_036941449.1 mRNA downstream 111477 52066336 ~ 52091683 (+) False LOC110485215
XM_036941453.1 mRNA downstream 111817 52066676 ~ 52091683 (+) False LOC110485215
TU1351984 other upstream 52400 51898956 ~ 51899716 (+) True G1185525
TU1352155 other upstream 70140 51881388 ~ 51881976 (+) True G1185687
TU1351990 other upstream 71163 51869301 ~ 51880953 (+) True G1185531
TU1351989 other upstream 104736 51830790 ~ 51847380 (+) True G1185530
TU1352104 other upstream 186192 51765421 ~ 51765924 (+) True LOC118938087
TU1351987 other downstream 8564 51963423 ~ 51965490 (+) True G1185528
TU1351973 other downstream 59672 52014531 ~ 52069615 (+) False LOC110485215
TU1351972 other downstream 91274 52046133 ~ 52069615 (+) False LOC110485215
TU1351975 other downstream 91846 52046705 ~ 52069615 (+) False LOC110485215
TU1351964 other downstream 93284 52048143 ~ 52069615 (+) True LOC110485215

Expression Profile