RNA id: XM_036941452.1


Basic Information

Item Value
RNA id XM_036941452.1
length 4539
RNA type mRNA
GC content 0.48
exon number 13
gene id LOC110485215
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 52014531 ~ 52091683 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTACCAGTTATATGATATTTCAGAAACCAGATTATGAATACCTGTGGGTTTGTTATTTTTTACACTAGCATGAATATTGGGTGAGTATGAAGCCAGTACATTTTCACCAGGAAAGTTGCATTTGTTGAATTAACAATTTATTGAATGACCGCCGTAATGTTTGCAGGAGTTTGCTGTGATTAGATGGATCAGTCACCTTCTCAGGTGAAACTGTTAAATTGTCCAGTAAAATCTCTGGGTTTGATATGACAGACTACTATATGACCTGGATAAGACAGAAACCAGGCAAAGCTCTGGAGTGGATTGGGAGAATTAACTCTGGTTCAACAGATGCTCCAGTCTACTCAGAATCCCTGAAAGGCCAGTTcatcctgactgaggatgtctcCACAAGCACCTAGTTCTTAGAGGCCAAGAGTCTGAGATCAGAACACTCTGCTGTTTATTATTGTGCTCGAGAGGCAATGTGACTGAAATTGCTGGGGCAGTTGCACCAAACCAGTCAAAACTATGCCACATATGCACATGCAATACCTCTTTGGCCAACCTAGGGGTCACTGCCCCTTCTTAGAATACCACTGTTCTACAGTATGATGTCCCAATACTGTACTATTTTATGTAACACTCCACATTCTTACAAATTCTCATTCATATTCCTGTAGTGCAAAGACCATTTATTTTACAATCTAAAGAGATGATGCACAACTCACTCTTTAAGTTTTATAATTATATATGCTCATCTGTGCACTCTATCCTTCATCCACAACGGACGGTGAGAACGGATTGGCATTTCTTTATTTCTTCATTCATTTCTTATAAAATCTGACAAGATCAACTCTACTGGCTAAAGACACATTCCCAAGCCTCATCAACTGCTCCGACTTTGTTCCCTCTTGCGCAATGTGGCTCCGGGACCGGAGATATGATGACTCTGGGTTGCATTGCCACTGGCTTCACGCCTGCCTCCCTCACCTTCAAATGGAATGACGAAGGCGGGAATTCCCTGACTGATTTCGTTCAGTACCCTGCGGTCCAAACCGGTGGAAGCTACATGGGAGTCAGTCAACTCCGTGTAAagagagcagactgggacagTAAAAAATTTGAATGCGCCGTGGAACATTCTGCTGGATCAAAGAAAGTACCAGTGAAAAAACAACTGCAGCGGGTCATTCCTCCAAATATCACACTGTATCCTCTCTGGGAGGAACTGGAGGTAGGATCGAAGGTGGGAATCCTCTGCATCCTGAGTGGGTTCTACCCTGACAAGCTAAGTGTGGAGTGGCTGCTAGATGACAAGACTGTGACCACATCTCCAGTCCAGCAGAAGCTGCAGAGTGTAGAAGGTGAGGATAAAATATTCAGCCTGAACAGCCAGCTGGAGCTGGACCAGAGCCAATGGACTCAAGGGTCAGAGGTCACATGCAAGGCCACCCACAATGCAGCACAAGGACCACCTACAGGAACACCAGTCTCCAGGACCACCAGCATTTGCTCAGCGTTTCCCTCGTctactccatccatccacctggaGACCCCCACATTCAGGACAGTGATGACACAGACTGAGGTAACAGCTACATGTGTGGTCCACTCTGCGTATGATGCCAAAGTGACCTGGCTTCTGGATGGAAAAGATCCAACCAGCAGGACCAAAGTGAACCAGGCCAGCAGCACAACTCAGAGCATCAGCAGTAACCTGACTCTTCCCTCAAGCCAATGGAAAACACTGAACACAATAACATGCAGAGCTGAACATCGCTGCTTCAACTCCACAGAGAAGACCAGTAATGTTAAAGGGCCTGCAGTGAGCAGCACTACCACAGTTCTGATCAGGAGGTCTCTCCCAGAGTTACTGAAGGGAGACAGTGCTGTGCTGGAGTGTGCCATCACACAACTCTCCTCCAGTGACCTCTACGTCACCTTTCAGGCCAATGGGGTTGATTTCCCTGAGAAACAGTATGTGGATCTGCCTGCCTCCAATGGCCCCCATTCACTCACCAAACGGTTCTCTATCCCCAAATCACACTGGAAGACAGACAACACTTTCACCTGTAAAGTGAACCAAGGCTACTCCAACAGCTGGGTGTCTAGCTCCAAAATCAAGCTTTTTGGTGAACTGTCCATGGAACTCCTTCTAGTCCCCAGTGAGGAGTCGTCTGGCTCAGGGACCCAGAAACTCATGTGTTCTGGGTGGGGCTTCAACCCTAAGATCAAGTGGCTCTCTGGGTCTGAACAGAAGTCTGCAGCAGACAATGAGATAAGGATGGGGGAAGACGGACATGTGGCACTAACCAGTCatatcacagtaacacagcaggagTGGAATGAGGGGAAGGACTTCATCTGTGAGGTAGATGACAAAGACCTTCAGAAAACTGTCAGGAAGAGCACCAGTTTATGCACAGCTTTTCCCTCGTctactccatccctccacctggAGACCCCCAGATTCAGGACAGTGATGACACAGACTGAGGTAACAGCTACATGTGTTGTCCACTCTGCGTATGATGCCAAAGTGTCCTGGCTTCTGGATGGAAAAGACCCAACCAGTAGGACCCCAGTGAACCAGGCCAGCAGCACAACTCAGAGCATCAGCAGTAACCTGACTCTTCCCTCAAGCCAATGGAAAACCCTGAACACAATAACATGCAGAGCTGAACATCGCTGCTTCAACTCCACAGAGAAGACCAGAAATGTTAAAGgaCCTGCAGTGAGCAGCACTACCACAGTTCTGATCAGGAGGTCTCTCCCAGAGTTACTGAAGGGAGACAGTGCTGTGCTGGAGTGTGCCATCACACAACTCTCCTCCAGTGACCTCTACGTCACCTTTCAGGCCAATGGGGTTGATTTCCCTGAGAAACAGTATGTGGATCTGCCTGCCTCCAATGGCCCCCATTCACTCACCAAACGGTTCTCTATCCCCAAATCACACTGGAAGACAGACAACACTTTCACCTGTAAAGTGAACCAAGGCTACTCCAACAGCTGGGTGTCTAGCTCCAAAATCAAGCTTTTTGGTGAACTGTCCATGGAACTCCTTCTAGTCCCCAGTGAGGAGTCGTCTGGCTCAGGGACCCAGAAACTCATGTGTTCTGGGTGGGGCTTCAACCCTAAGATCAAGTGGCTCTCTGGGTCTGAACAGAAGTCTGCAGCAGACAATGAGATAAGGATGGGGGAAGACGGACATGTGGCACTAACCAGTCatatcacagtaacacagcaggagTGGAATGAGGGGAAGGACTTCATCTGTGAGGTAGATGACAAAGACCTTCAGAAAACTGTCAGGAAGAGCACCAGTTTATGCACAGCTTTTCCCTCGTctactccatccctccacctggAGACCCCCAGATTCAGGACAGTGATGACACAGACTAAGGTAACAGCTACATGTGTTGTCCACTCTGCGTATGATGCCAAAGTGTCCTGGCTTCTGGATGGAAAAGACCCAACCAGTAGGACCCCAGTGAACCAGGCCAGCAGCACAACTCAGAGCATCAGCAGTAACCTGACTCTTCCCTCAAGCCAATGGAAAACCCTGAACACAATAACATGCAGAGCTGAACATCGCTGCTTCAACTCCACAGAGAAGACCAGAAATGTTAAAGgctcagTGACCCCCTCCGCACCAACAGCCACCCTGCTCCAGGGTCCCAGTGAGCTCGTCTGCCTGGTGCTTGGCTTCAGCCCTTCAGACATCAACATCACCTGGCTGCTGGACAACGTCACAGAGCTTTGGAACAACAACACTAGCACCCCCTACAGGGCACCAGGAGGAAAGTTCGGCATCAGGAGCCACCTGAGCCTGGCACACCAGGATTTGACACCGGGGGCTGTTTACACCTGCAGGGTGACCCACACCACCCAGACTCTGGCCCTGAACATATCCAAAccagAGCTCCTTGAGGTGGAGGGTGTCTTCTTTGACGAGAACAGGTCTGAACCCATTCTGGTGGACACTGCAGAGGAGAACTGGAACATGGCCTGCATCTTCCtggtcctcttcctcatctccctcctctacAGCTTCACAGTCACTCTGGTCAAGaCAAAATGATGACTTCAGGACACTTCCTGATGACTTCAGGACACACTATATGATGGATCCCTCGGAGTTCAACTGGAAATGAGACCATTTATTTCAACCTTTTCTTATAAAATCACAACACGTTTCTTTAGAACGTGCATAGATTTAATTACATACGGTTTCCTGTAGCTGGTGACAGGGAAGTGACAGGGAAGTGTTTGATGACAGGGAAGTGTTCTTGTTTTTATTCCCCACAAAAACAGACAATGTGGTGGTGCGCTTACTTGCTCTCATCTCTTGTTAATGCGTTATAGAATTTTTGAACAGTTAATGCGTTATAGAATTTTTGAACAGTTAATGCGTTATAGAATTTTTGAGcagagataaaaaaaaagatGTTTAACCTCTATTAAATAAGGCCGACCATTACTCTCTATAATGAAGTATTTAGACACCAGTTATTGCTGAATTATCTGCTGATAATAAAACATTATTTCAAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1352193 lncRNA upstream 25084 51956170 ~ 52023060 (+) False G1185722
TU1352194 lncRNA upstream 25084 51956768 ~ 52023060 (+) False G1185722
TU1352196 lncRNA upstream 25084 51957558 ~ 52023060 (+) False G1185722
TU1352195 lncRNA upstream 25084 52021813 ~ 52023060 (+) True G1185722
TU1352202 lncRNA upstream 72452 51970973 ~ 51975692 (+) True G1185726
TU1352250 lncRNA downstream 1692 52093375 ~ 52093611 (+) True G1185774
TU1352251 lncRNA downstream 3018 52094701 ~ 52095145 (+) True G1185775
TU1352258 lncRNA downstream 10694 52102377 ~ 52102600 (+) True G1185782
TU1352259 lncRNA downstream 11115 52102798 ~ 52103079 (+) True G1185783
TU1352269 lncRNA downstream 13114 52104797 ~ 52107657 (+) True G1185793
XR_002468108.2 mRNA upstream 93285 51952116 ~ 51954859 (+) True LOC110486763
LOC110486748 mRNA upstream 107104 51936042 ~ 51941040 (+) False LOC110486748
LOC118938088 mRNA upstream 195258 51840452 ~ 51852886 (+) True LOC118938088
XM_036941448.1 mRNA upstream 224187 51783888 ~ 51823957 (+) True LOC118938318
XR_005035589.1 mRNA upstream 225270 51783888 ~ 51822874 (+) False LOC118938318
XM_021558580.2 mRNA downstream 29800 52121483 ~ 52139499 (+) False LOC110486764
XM_021558581.2 mRNA downstream 30072 52121755 ~ 52139499 (+) False LOC110486764
XM_021558582.2 mRNA downstream 49590 52141273 ~ 52142730 (+) True LOC110486765
XM_036941457.1 mRNA downstream 283141 52374824 ~ 52390015 (+) False LOC110486767
XM_036941456.1 mRNA downstream 283142 52374825 ~ 52390015 (+) False LOC110486767
TU1351987 other upstream 82654 51963423 ~ 51965490 (+) True G1185528
TU1351984 other upstream 148428 51898956 ~ 51899716 (+) True G1185525
TU1352155 other upstream 166168 51881388 ~ 51881976 (+) True G1185687
TU1351990 other upstream 167191 51869301 ~ 51880953 (+) True G1185531
TU1351989 other upstream 200764 51830790 ~ 51847380 (+) True G1185530
TU1352263 other downstream 29894 52121577 ~ 52132027 (+) True LOC110486764
TU1352291 other downstream 83583 52175266 ~ 52176505 (+) True G1185815
TU1352351 other downstream 182647 52274330 ~ 52355941 (+) True G1185855
TU1352390 other downstream 287187 52378870 ~ 52389196 (+) True LOC110486767
TU1353565 other downstream 912369 53004052 ~ 53022981 (+) True LOC110539012

Expression Profile