RNA id: TU1351972


Basic Information

Item Value
RNA id TU1351972
length 1409
RNA type TUCP
GC content 0.43
exon number 5
gene id LOC110485215
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 52014531 ~ 52091683 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGTATTTTTATGTAAATTGTTGTGGCTATATTGTTTTAAAaacctaaaaaaaaatgttgtggaTCCATCAGACCTGCGAACATTGgatgaataacaaaaacatgaacaccacacaagggttaaccatcatggctaccacagcattctgcggtGATACTCCATCCCATTTGGTTTAAGCACTCTGGTTCAACAGATGCTCCAGTCTACTCAGAATCCCTGAAAGGCCAGTTcatcctgactgaggatgtctcCACAAGCACCTAGTTCTTAGAGGCCAAGAGTCTGAGATCAGAACACTCTGCTGTTTATTATTGTGCTCGAGAGGCAATGTGACTGAAATTGCTGGGGCAGTTGCACCAAACCAGTCAAAACTATGCCACATATGCACATGCAATACCTCTTTGGCCAACCTAGGGGTCACTGCCCCTTCTTAGAATACCACTGTTCTACAGTATGATGTCCCAATACTGTACTATTTTATGTAACACTCCACATTCTTACAAATTCTCATTCATATTCCTGTAGTGCAAAGACCATTTATTTTACAATCTAAAGAGATGATGCACAACTCACTCTTTAAGTTTTATAATTATATATGCTCATCTGTGCACTCTATCCTTCATCCACAACGGACGGTGAGAACGGATTGGCATTTCTTTATTTCTTCATTCATTTCTTATAAAATCTGACAAGATCAACTCTACTGGCTAAAGACACATTCCCAAGCCTCATCAACTGCTCCGACTTTGTTCCCTCTTGCGCAATGTGGCTCCGGGACCGGAGATATGATGACTCTGGGTTGCATTGCCACTGGCTTCACGCCTGCCTCCCTCACCTTCAAATGGAATGACGAAGGCGGGAATTCCCTGACTGATTTCGTTCAGTACCCTGCGGTCCAAACCGGTGGAAGCTACATGGGAGTCAGTCAACTCCGTGTAAagagagcagactgggacagTAAAAAATTTGAATGCGCCGTGGAACATTCTGCTGGATCAAAGAAAGTACCAGTGAAAAAACAACCGGAATATCTGCAGCAGCCGTCTCTTTACGTAATGACCCCCTCTAAAGAGGAGATGTCAGAAAATAAGACGGCTTCCTTCGCCTGCTTTGCCAATGACTTTTCACCCCGTACACACACAATCAAATGGATGAGGATGGAAAAAGGAACAGAACAAGAAGTTGTATCTGATTTCAAGAGTTCTTGTGAGAGTGAGAAGAAGAGTGAGACAACTCTGTACAGCACAACCAGCTATCTCAGAGTCAATGAGAGTGAGTGGAAGAGTGAAGAAGTAACATTCACTTGCGTGTTTGAGAACAAAGCTGGAAATGTGAGGAGAACTGTGGGCTACACTTCATCAGATGCAGGTCCAGTCCATGGACATTCAGTAGTCATTACGATCATCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1352193 lncRNA upstream 23073 51956170 ~ 52023060 (+) False G1185722
TU1352194 lncRNA upstream 23073 51956768 ~ 52023060 (+) False G1185722
TU1352196 lncRNA upstream 23073 51957558 ~ 52023060 (+) False G1185722
TU1352195 lncRNA upstream 23073 52021813 ~ 52023060 (+) True G1185722
TU1352202 lncRNA upstream 70441 51970973 ~ 51975692 (+) True G1185726
TU1351978 lncRNA downstream 210 52069825 ~ 52070857 (+) True G1185519
TU1352000 lncRNA downstream 2625 52072240 ~ 52074041 (+) True G1185541
TU1352250 lncRNA downstream 23760 52093375 ~ 52093611 (+) True G1185774
TU1352251 lncRNA downstream 25086 52094701 ~ 52095145 (+) True G1185775
TU1352258 lncRNA downstream 32762 52102377 ~ 52102600 (+) True G1185782
XR_002468108.2 mRNA upstream 91274 51952116 ~ 51954859 (+) True LOC110486763
LOC110486748 mRNA upstream 105093 51936042 ~ 51941040 (+) False LOC110486748
LOC118938088 mRNA upstream 193247 51840452 ~ 51852886 (+) True LOC118938088
XM_036941448.1 mRNA upstream 222176 51783888 ~ 51823957 (+) True LOC118938318
XR_005035589.1 mRNA upstream 223259 51783888 ~ 51822874 (+) False LOC118938318
XM_021558580.2 mRNA downstream 51868 52121483 ~ 52139499 (+) False LOC110486764
XM_021558581.2 mRNA downstream 52140 52121755 ~ 52139499 (+) False LOC110486764
XM_021558582.2 mRNA downstream 71658 52141273 ~ 52142730 (+) True LOC110486765
XM_036941457.1 mRNA downstream 305209 52374824 ~ 52390015 (+) False LOC110486767
XM_036941456.1 mRNA downstream 305210 52374825 ~ 52390015 (+) False LOC110486767
TU1351987 other upstream 80643 51963423 ~ 51965490 (+) True G1185528
TU1351984 other upstream 146417 51898956 ~ 51899716 (+) True G1185525
TU1352155 other upstream 164157 51881388 ~ 51881976 (+) True G1185687
TU1351990 other upstream 165180 51869301 ~ 51880953 (+) True G1185531
TU1351989 other upstream 198753 51830790 ~ 51847380 (+) True G1185530
TU1352263 other downstream 51962 52121577 ~ 52132027 (+) True LOC110486764
TU1352291 other downstream 105651 52175266 ~ 52176505 (+) True G1185815
TU1352351 other downstream 204715 52274330 ~ 52355941 (+) True G1185855
TU1352390 other downstream 309255 52378870 ~ 52389196 (+) True LOC110486767
TU1353565 other downstream 934437 53004052 ~ 53022981 (+) True LOC110539012

Expression Profile