RNA id: XM_021558580.2



Basic Information


Item Value
RNA id XM_021558580.2
length 5693
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC110486764
representative False

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 52121483 ~ 52139499 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTGTTCTGCGCGATCGGTGACTCGGAGCTCCGCAATCCCCTGGGACACTGTTCCGCCCTCGATAGCTCTGCGATCGGCGTCTCGCCATTGCTCACAACGAATGGCTGGCTGCCTGTAGCAAGATATTGCGGGGAGAGGGCTATCGAATCCTCCATTGAAACGCTTTGGATCAGTTTCCCAGCTAGGGGaccctGTGGTGGTGTGCGTAGCGCACCATGGCCCAGACCCTTCAGATGGCGATTCCTAACTTTGGCAACAACGTCCTGGAGTGTCTGAACGAGCAGCGTCTCCAGGGGCTCTACTGCGACGTCTCCGTGGTCGTCAAGGGACACGCCTTCAAGgcTCACCGTGCCGTGCTTGCGGCCAGCAGCTCTTATTTCCGGGACCTCTTTAGCACTGGGGGAGGCAGCGGCTCCAAGACCCCCACAGTGGTGGAACTCCCCCCGGCCGTCCAGCCCCAGAGCTTCCAGCAGATCCTGGCCTTTTGCTACACAGGCCGCCTCAGCATGACAGTGGGAGACCAGTTCCTCCTCATGTACACCGCAGGCTTCCTGCAGATCCAGCAGATCATGGAGAAGGGCACAGAGTTCTTCCTCAAGGTTTCCTCGCCCAGCTGTGACTCCCAGGGCCTGCAAGCCGAGGAGGCTCCGCCCTCCGAACCCCAGAGCCCCGTCACTCAAACTGTTGCCGCGGGGACTGGCAGTCGCCCCGCCTCCTGCCTTACCCCCCTCCCCCTCGTAATGCGGGTGAAGACAGAGCAGCAGGGTAACCAATCAGAAGCCTCGCCCTACTCGGTGGTGTGCACCCCTGTGGCCAAGCGCTTGTGGGAGGGCGGCAGCAGCCGAGACGGGGGTGGAGGGGGCTCAGGTGGAGGCGGGTCCAGGAAGGCCGCCCGCTTTTCCCAGGAGTCCGTGCGAGGGAGTGCCATCCAGAGCTCGGGGGCTCTGGCACTGGCCATGGGGATGGGGGCCAGCGGGGCGGGGATAGGATCAGGGGTTGGGGGTCACGGCAGCGGGTCCAACGGGAGTGTGGTCTCCATGGGCAACGTGGCATCGGAGGGCGCCAGCCCGGGCACGATGAGCGCCTACACCAGTGACTCGCCTATCAGTTACCatgacgaggaggaagaggaggaggtgacggAGGAGCAGACGGAGGAGCAGTACAGGCAGATCTGTAACATGTACACCATGTACAGCATGCTCAACGTGGGCGCCGcagCTGGTGAGCGTGTGGAGGCCCTGCCGGACCACTCAGAGACCCGGGGTCGTATGCGGGGTCGCCAGGACCTGTCGTCTCTCCCCGCTGAGCTCATCACACAGATAGGCAACCGCTGCCACCCCAAACTATACGAGGAGGGGGACCCCGCAGAGAAACTAGAGCTTGTCTCAGgtACGTGTGTGTTCATATCTCGAGCCCAGCTGATGAACTGTCATGTGAGTGCAGGGACCAGGCACAAGGTGTTGCTCAGGAGGCTGCTGGCTGCCTTCTTCGACAGGAATACTCTGGCTAACAGCTGTGGAACAGGAATCCGCTCCTCCACTAACGACCCCAGCCGCAAGCCCCTGGACAACAGAGTGTTGCACGCAGTCAAATtctacAGCCAGAACTTCGCAACGAGCTTCAAGGAGAGCGAGATGAACGCCATCGCGGCGGACATGTGCACCAACGCCCGCCGCGTCGTCCGCAAGAGCTGGATCCCCAAGCTGAAGCTGCTCATGGCCGAGGGCGACGCGTACTCCGCCTTCCTCCCCGACGCCAAGATGGAGGCCGACGCCCTAGGGGCGGAGCCAACCTTTGAACCCAACTCCCTGGAGGGCGCCGAGACGGGCGGCTCGTCCGGCGAGTCGCTGCAGGGGGTGGGCAGCGACGGAGGCACTTTGTTTTAGATGGGGAGGTGGAGTACAGAAGTGTTTAgaagacgatgatgatgatgaataccTATATTTCCCTGtactcctttcttctcctctggtGGTGTGGCCCATCCCCCTGACCCTTTGGCCTTTTGATCCTCCACCTCCGACATGTGACTCTGAAACGTTGCTAGGGGAAACAGGGGTTGTTACCTGGATGTTAACCAGGAAGTTATGCTTTAATTTTGAAAGCGAGAGTCCAAGCAATCGTAACTTCCAATATGGTTTCTGCTGTATATTAGTATGGGGGTAGAGAAAGGGTGATGGGTTTGTGGGGATgcagtatttttttgttttaatttttttgttttattaacCAAATTCCTGCCTCCATATCAAAACACATTCCCCTGGTTTTGAATGTAGATGTCAGCAGCATTGCACAATGTCAGTCTGAAGGATTGTATCCCAACCTCTTGAGGAAAAACAAACCGACAGAAAGATAACTACTCTATGGATATGAGAGAGACTGTAGTTTCTCTctagaatgagagaaagagaaaaggggagagagagggagcgatagaAAGACCCCTAACCCACCAACCCCACACCCTTCTGTGACCAGAACAAAATGATTATGCCCTCAGTTTTAATGTACTGTCTCTCTTCTTGTAGCTTTTCTGATCACAGCTCGTTTCTCTGTTTGTAACATACGATGGATCCAGAGATGAGGACTACAGGTTGTACCATAATTGTAAAGAAATCCAAGGGGAACAGAAAAAGACGGTCATATTTTTTTTGAATATGTATTTATACAACCGTGGGTgtgtacagagagaaagagagggattggTTTTAAATCTCTGTTGTTTTATTGTATTTTGAACAGCTGTTTTTGCAAAGAAAGTCCTGCGCCGAAAAATAAGATTTAAAAGCAAATAAATAAAAGTGCTATTTTTGCATAAAAATATGGTATTGATCAAGTGGCCAGAAAAGTCTTAACGTAGGGCCTTTTGAGTTTTTTGTTTTGACAAACTATTGAACTGAAAAATATCTGTTTTTAAGACAGAACTGGGCACTTTCTACCTGCGGCAATCCAATATAGCTTATTATCTTATTCTTGTCCTTTTTCTCTATGGAAATTGTCAAGGAAGCCTACCTATGTGGCTGTTCACAACAATGACTGACTTTGTTATGCTTGCTAGCGAGCTAGCGACGTTACTATGCTAGCTAAACTGCTTACTCGGAAATCACGGCTAAATGTAGAAATGCACAGCTTGAATCAACTGGTCGACTGCTGCAACTAtcgtgctagctagctaacccctCTGTTGGTTAGTGACATGCTCTGAAGCAGACTTCtgacatcattacacatcatgaGGTGGTGATTCAATGACCGCAAAACATTTTGGAATAATGGAATGTGCCTTTTTTAATCGACATGGATATGCAGGGGTGGGTCCTGCTTATGTTGATGTTGGGAAGGAGGGAGTAGAATGGGGTTTAAAAGGCGGCAGGTCGTTCAGCTTGAGACAGagttgtaacacacacacacacacacacacgtgttccaaagagagatggggtgaggtcAGGGGGTTTGGCATTCCGGTGGAGTATGTTGGTGTGTTTTAAACAGTCTCATATATGTGCGAGAGCAAGCATTTGTGTTCATTCCTTGAATGTGACTGAAAAGTATATTTGTTCCTGTGCGATTGATGTGTGTGAGTGCGCTTTACGTGGATgtgcgtgtgagtgagtgtgcttttacgtgtgtgtgtcctccacCTTGTAGTCTTTTGGATTGGTTTAAGACTCCCTCTGCTGGGACACTTGTCTTTGTGAACGATGACCTACACCATCTTCCATACACCTTTGCAATCCAAAAGATGTGAGACACCTTCAGATAGAAAAGTGATGTATAGAGCGGACACAATTCACTTTTCTCCATACGGCAGAGAAGCAGGTCCACTCTATGCATGACATTTCTGTCCTGATTGCTGTTGTTTAACTCTCTCTCACGCTTGGTAAATCCAAAATGGACGAAGGTGGATATGTTAAAGGGGAGGTGAAGCACCTTTTTAAATGGGATGAACCCATGTTTCCTGCACCTTTGATAAAGGGTTTTGATGTGTTGTGTGGAGAATCAACCCAAGGGTCATGCAAAGGCATGGCCTTGTTCAAATACTTTTAAGTGGCATCCTTCCTCCCTTTCCTTGATGTAAGCACTTCAGGGAAGGGACTTAAGGGTGCATTTAGAGAGTATAGGAACATAGCCTGCGTCTCAGATCTGTGGATGTGGGATGCACTGGGAtgactcctgttgtaaatattgGGACCGTTGAGCTGACTTTCTTTCTACGCTCGTCTAACGATTTCCTATGTAGGGTGATTGTGTAACAGTGTGGAAGCGATGAAAGAGGactgttttttttaatatattttttattttttacttggtCTCGCGTGTTGTCGAGATGTCATggagactggtgtgtgtgtgtgagctcccAGCATGCATTTGGCCTACAGgtcagaggaggaggatgatggttGCTTTGGTCTTAAAGTACTGGCCTAATGTGCTACTGAGTTGGTGTGACTGAAGGGAGGGAGATAGGTGTCATGGCTGTAGACTGTCTCTCCATCAGAATGTTCATTTTTACTATGttttttcttctttgttttcttGTATTGCTaatgttttcttttttctttaaAGAAACGTGTACTGTAAAGACCTTAAAGAAATGCTACTAATTGAAGGTGGTGAATGATTTACCAACTTCTTGCTGAAGAAAACATTGAAAAGGAAAGAAAGATAACTGTACGATAGTTAGACAGAGCACCGATAGCTAGACAGAGAactgtatatttttttcattgtttgTGATGAGGGTTCCATGAGAGGTTCTTCCAGGAGGGGTGATGGGAAGACTAGGGCACTGTACTGTCTCTTGTCTATTGGGGGGAATGATTTTTGGGGAGGTGGGTGGGTAGTAGTGGGTGTGTGGCGCTATAGAGGTCTGAATTACAAACTTTGCACCTGTTATTGAACCTATACACCAGGGTCTGATTTCACCCTGCTGAACAGATCCCATGATATTATGGACAAGGTCAGATCCAGTCTTGTTCACCATCCTGCTGTTCACATGTGGTACTGGAGCCACCACCAGATGACAGTATTTCCCCCACAGACCATAGTCAATGACTGAGTTGGTTACTAAGTGATCAAAGTTCAGTTTTGCGTGTTTTGGAGGGGGTTACTTCTCTCAGCTCTGACGCACAAGActaaaggaacagaaaggaatgtttgtttgtgtgagacAGAACAGTTCAAGCtgatccatcctccatccctacaGGTAGATGTCCCtcttcccccaacacacacatctcaagaGGATGGACAAACAAAGGCAGTGTCCAGTGTGGTGTATATAGGCTTGGAGAAGGACCTTTttcacatatacatatataaatatgaatatatgtatagatatatactgtatattatacataGAGGCACTAAAGTTGAATTGTTAGTCGTGCACTCTCAGCATGAGGTATATACCCACACACCGCTTATTGAAACCAGTGCAGTAGTGTCCCCAATGTCTCTGCCCCTGCTCCTTGCCCTCCGTGACCCTGTAGCGCCAGTGCTCATTCTGTTCTCATTGTTTTCCAAGTGCCAATAACTTTGTGAAACCCCTTAACTGTGACCCAATATTATTCAAGGTAAATGCACATTAACTACTGTAAAGAAAAATCATGAAGATAAATGTCAACATGGATTAAAAAAAACTATCTTAATAAAAGGTTTGTAACAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1352271 lncRNA upstream 10975 52110296 ~ 52110508 (+) True G1185795
TU1352269 lncRNA upstream 13826 52104797 ~ 52107657 (+) True G1185793
TU1352259 lncRNA upstream 18404 52102798 ~ 52103079 (+) True G1185783
TU1352258 lncRNA upstream 18883 52102377 ~ 52102600 (+) True G1185782
TU1352251 lncRNA upstream 26338 52094701 ~ 52095145 (+) True G1185775
TU1352281 lncRNA downstream 694 52140193 ~ 52140419 (+) True G1185805
TU1352283 lncRNA downstream 3335 52142834 ~ 52143258 (+) True G1185807
TU1352262 lncRNA downstream 22291 52161790 ~ 52162090 (+) True G1185786
TU1352288 lncRNA downstream 30257 52169756 ~ 52170717 (+) True G1185812
TU1352305 lncRNA downstream 38678 52178177 ~ 52184170 (+) True G1185817
XM_036941452.1 mRNA upstream 29800 52048144 ~ 52091683 (+) False LOC110485215
XM_036941451.1 mRNA upstream 29800 52065978 ~ 52091683 (+) False LOC110485215
XM_036941450.1 mRNA upstream 29800 52066132 ~ 52091683 (+) False LOC110485215
XM_036941449.1 mRNA upstream 29800 52066336 ~ 52091683 (+) False LOC110485215
XM_036941453.1 mRNA upstream 29800 52066676 ~ 52091683 (+) False LOC110485215
XM_021558582.2 mRNA downstream 1774 52141273 ~ 52142730 (+) True LOC110486765
XM_036941457.1 mRNA downstream 235325 52374824 ~ 52390015 (+) False LOC110486767
XM_036941456.1 mRNA downstream 235326 52374825 ~ 52390015 (+) False LOC110486767
XM_036941463.1 mRNA downstream 266678 52406177 ~ 52414576 (+) True LOC110485217
XR_005035768.1 mRNA downstream 304490 52443989 ~ 52444998 (+) True LOC118938557
TU1351973 other upstream 51868 52014531 ~ 52069615 (+) False LOC110485215
TU1351972 other upstream 51868 52046133 ~ 52069615 (+) False LOC110485215
TU1351975 other upstream 51868 52046705 ~ 52069615 (+) False LOC110485215
TU1351964 other upstream 51868 52048143 ~ 52069615 (+) True LOC110485215
TU1351987 other upstream 155993 51963423 ~ 51965490 (+) True G1185528
TU1352291 other downstream 35767 52175266 ~ 52176505 (+) True G1185815
TU1352351 other downstream 134831 52274330 ~ 52355941 (+) True G1185855
TU1352390 other downstream 239371 52378870 ~ 52389196 (+) True LOC110486767
TU1353565 other downstream 864553 53004052 ~ 53022981 (+) True LOC110539012
TU1353929 other downstream 1306924 53446423 ~ 53450464 (+) False LOC110538743

Expression Profile