RNA id: TU1353041


Basic Information

Item Value
RNA id TU1353041
length 4312
lncRNA type sense_over
GC content 0.41
exon number 3
gene id LOC110485216
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 52155640 ~ 52331576 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCCACAAGGTCCCCCCTCCACAGCCTAGAGGGCCCCGCACTAAAGACCTGCACGAACCCTACAACAACGCGGATGACAACAGGTGCTAGCCTCTGGAGActatggagggatggatggagggagggagggctcaaCCACACTGTCTGAGTTATCAGTCCCTACCTCCCAGCCCAGGAAAACACACAGCCAGATCACTGATCACCATGAGACAGGGGAAACCAAGGCATGATTCTTTCTTTCCTTATTTCCGTTTGTTTTTCTTTTCGTTTCTTCTGCTGCTCAGTGTTTCCcggggatggagggagtgaggaaggGGTAGTTAGAAtaaagggatgaggaggaggaccaCTGAAGGATGAGTGGAAATTAGTGAACAGGGTATGGAGTACAAACCAATTCCTCCTCCAAAAACTATGGAACCCAGCTCATCAGATACAAGGAGTTTTTCAAAATGGATGATTTCAAAATGGATGATATGGGGACGGATGCTTTTCTCACCGTATCATGATGCTACGCCTCTGGAAACAAATTAAAAACCGCCACAACGACCAAGACGTCATCACGTAATCAACGCAAGAAACTATGACATTGCGGAGAACTAAGTGGAGTTGCGTTAGTTGCAAAAACCAACCACCAACCCCGATGATGGGGAGATATTGATGAGTTTTATCATCTGTGTTTACTGTTAATAATGACATCAGTGATGATGAGCCTTCCACCTGAGTGTGGTGGGGGGAGTGGGGGGGACACCGGGACACACACTCTAACTCTGAACGAGAGAGGGGGTTATGTAGGCGGAATCTATCCATTCCAaccccccaacccccccaaaAAGATTCCGCCCCAACCGAGTAGAGAAGAAACATAAAAAAGTGGATGgtgaacataaaaaaaaatagacttaaaaataaacattttcttcAGTATTTCTTCTTCTACTCCTGCGGCTGCTActtttccctcttcctcttcttcttcttcttcttcgaaaCATTGAAGCTTGATTCTTCTGTTGCACCCGCACAGCTTCGTTGGAACTTGCAGAGTTTAAAAACCTGTGGAATCCTGCATGATTGATACAAAAAAATGATAACAAAGAGAAACTACTGTAATGTGGGGGAAACTATCCCTGGGTCCTTTCTATATTAGTCTGTGGGGTTCTCTCTTTTTCCTGTAAtccctttgtttctctctctctctctcttcctgtgctGGATGTATAATCAGGATAGTTAGGATGGATGAAGAGATGAggcgtccctctctctctctcttcctgtgctGGAGGTATAATCAGGATAGTTAGGATAGATGGCGAGATGAggcgtccctctctctctctctctctcttcctgtgctGGATGTATAATCAGGATAgttaggatggatggagagatggggcgATGAGGAAGAGAAGCACAAGGTCCAAGCCTTTTTTATGCGGAGGGACAGGATTATCTATTTCCCACTTTGTTCTTATTGAAATGCTCTGTGCCAAATTATAACTGTTGATGTGGCTGAGATTGCACAgtcattttcaaggaagtagataTTTTGTTACATGGCCTACTTTTATTTCATGGAAGGAAAGAAGGCAGGAAAGTATGAAAACGCAGACCCCACATATTATAGGTTCATATTAAAAGGGAGTTGAAACTGGGGGAGGAAGTTACAAGCACGCTCCATGGTCCTTATTGGCTCTTCATCTGCTGACGCATAGCCTCGTTCAAACCAGAGATATGTCTCTAGTCTTCCAGGGTTTGTGTTTGAAAGagcgatgaaaagagagagagagaaagaaaggccgATGAAAGGAGGGAACCTCTTCACCTTTCGTTTATTTGTTATTAATAGTGATAATGGTTCTATAGATACTGATAACAATTCTATTGATGATtatgataataatgatgatgataataataacgaTGATaataatggtgatgatgatgatgacgatgttCATGCTTGTGAGAGAGAATTATTTTAGTCTTGTATTTGTGTTTGTTACTTTCGAGTCGAGACGTTCTGTCTGGTTGGTGGTCCACTGGTCCGGCTGGTGGGCGGAGCTTTGTCAGAGAGGTGCATTGTGGGAACAGGAGTAATCATAGTAATGACTCTGATACAGTGTAATACGGTGGGGAAGGGAAAAGGAACTTAAAAAGGAACTAAAAAAAAACAATGTCAAACATCATACAGGAAATCATGTATCTGACATGTATACTTGTTCATTGGACAGTTGTTTACATATATGAATCATTTTGGTAAATATAGGGCAGCTAAATGGTCTTGCTTAGGTAACGGGGTCTACAGACTAAAGTAGACCAGATAAAGCAGTAATGAGACAGAGCTCCTCTACCAGTTTGGCCCTCTAGGTGGCACTGTATGCAATACATTGCATCCCTGTCCTATTGCATCATTGTATCACCCCTTCTATTTTGACTGTCGGATTCCAATGTTTTCGTATCTGTCTTTAAACTGGGAGCATAAGGTTTAAGTGTTGTCTGTCACTGGTGGATCACCTCCTTTGTGTTCAGGACATGTAACACAGCCAATCACAAATGCACAGGACATGTATCACAGCCAATGAAAATGCATGGGAGAAACAATGACTTGGTCTTTTCTGCCAAACCTCTGTGTCCTGTTTCACCCTATTCTCTTTTTGTGTGTCTTTGTGCGCCTCAACCTAACGTCCATCCTAATACCCACCACTGTTCCGTACAGTGTCTCTCTCACAGTTGCCGGACTTTGAGGATTGCCATAGTGAACCATTCATTTATTAGAATTATGTCattattattcttattattaCACTCCATGTCAAAACCATTAGCGTCAGGTAACAGTGTTTGTTCACGGCTGCCATAGATATAGCGCAGTTAGATCTGCACATATCTGGATTCTGATGTACTGTAAAGACATATCCCATGATTCTATGTACCACACTTTGACCAGAAAGTGCACAGGCACATTGCCTTTACAGTATTCATCTAACGTAGGAATGTCATAGACGTGTATAAGTCACATCACAACACTGATAAGATAGGAATATACAGATACACTCTCAGTATGTAGCTCTTGGCTGTAGCAAGTATGCATGTACGTGTGCgtatggcgtgtgtgtgtttgcgtgtgtgtctgtgtatgaatGCGTTCTTTTATAGCAAGAATGTGTGTGTacattcaatgtgtgtgtgtgtacatcaatAGCTAGCTGTTTTCGTTggatatttcatttcatttgtttATTTGCTTTGAATATTTTGTGATGAGATTTGagttggtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagttagccTGTGTTTGTGAGCGAGTGTCAgaatgtttgtgtgtctgtgtgcaagaTGAAATAAGATGTCAATCACCCTACAATTGAAACTATGAGAGGCCCTAACATTCACTGTCAATCATTGTGTCCTGTACTGACCAACCatccactaacaacacatattcTAAATAATCCCACTGTTACTTCAAAAAGCAATGTATGAGCTGCTatggaaaacatagaaataaaagcATTTTAAGTACCAAAAAAATACCAAAAAAAGGGAAAATATCTACTTCCAGAACTGCATGTGCTATGTGCATGCCACACCGTGGATGAACTGTCATCTTCAGGAATCAAAAAATAAGAATATGAattcagattttaaaaaatatatgaatatagATAGATGTTTTTACTAAGCAACATGTTTTCTTTTTTCCTTCTATTTTTGAGAAcaaaaaaggtttaaaaaatctatttaaaaaaaaaatgtcaaaagaGCGACATGATGACTTTGGTGAGAATCAAAGTTGGTTTGTTTATTTATGTTGCCAGCTGTTAACTGTAAACATGGAGGTGAGACACTACACAACCATGTTCAGGACACTACAAAAAAAGAGAACTCCTGTTTTAAAGAAGATAATCAAATTAAAAGAGATGGGGATATCCCTGCCTACTTTTGGATGGGGCCAGGAGCCAGCCAAATCTGATGATGTAACCCTTAAAACTCTGGCTGTGGGATCTTttatctctcactcactccctctctatttctctctcactcttgtctctctcactcttatCTCTCACACTCTCAACCTATCTCACCGCTATTTCTACCCGTGCATTTTGTAATTCCAGACAGATTTCTTCCTAATGAATAAAAACCAGAGAGAATGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1353078 lncRNA downstream 11531 52142897 ~ 52144110 (-) True G1186467
TU1353066 lncRNA downstream 37991 52117438 ~ 52117650 (-) True G1186460
TU1353063 lncRNA downstream 42683 52112648 ~ 52112958 (-) True G1186457
TU1353033 lncRNA downstream 48972 52105789 ~ 52106669 (-) True G1186446
TU1353025 lncRNA downstream 61863 52093360 ~ 52093778 (-) True G1186438
TU1353094 lncRNA upstream 46692 52206862 ~ 52214888 (-) True G1186481
TU1353162 lncRNA upstream 164215 52324385 ~ 52399386 (-) True G1186535
TU1353181 lncRNA upstream 187454 52347624 ~ 52370137 (-) True G1186547
TU1353164 lncRNA upstream 228648 52388818 ~ 52393251 (-) True G1186536
TU1353201 lncRNA upstream 240774 52400944 ~ 52402441 (-) True G1186562
XR_005035767.1 mRNA downstream 53684 52100885 ~ 52101957 (-) True LOC118938556
XM_036941454.1 mRNA downstream 548639 51592159 ~ 51607002 (-) True LOC110486749
XM_021558576.2 mRNA downstream 554029 51592159 ~ 51601612 (-) False LOC110486749
XM_021558575.2 mRNA downstream 554030 51592159 ~ 51601611 (-) False LOC110486749
XM_021558579.2 mRNA downstream 570050 51581861 ~ 51585591 (-) False LOC110486760
XR_005035590.1 mRNA upstream 26387 52186557 ~ 52189703 (-) False LOC110538721
XR_005035591.1 mRNA upstream 26387 52186557 ~ 52189703 (-) True LOC110538721
XM_036941458.1 mRNA upstream 255149 52415319 ~ 52430034 (-) False LOC110486769
XM_036941459.1 mRNA upstream 255149 52415319 ~ 52430034 (-) False LOC110486769
XM_036941460.1 mRNA upstream 255149 52415319 ~ 52430034 (-) False LOC110486769
TU1352962 other downstream 124981 52025918 ~ 52030660 (-) True G1186381
TU1352963 other downstream 126667 51924963 ~ 52028974 (-) False G1186381
TU1352758 other downstream 144430 52010690 ~ 52011211 (-) True G1186216
TU1352690 other downstream 665400 51489777 ~ 51490241 (-) True G1186154
TU1352611 other downstream 781687 51352309 ~ 51373954 (-) True G1186075
TU1353318 other upstream 499161 52659331 ~ 52659809 (-) True G1186670
TU1354707 other upstream 1446854 53607024 ~ 53637813 (-) True mosmoa
TU1354775 other upstream 1646474 53806644 ~ 53810757 (-) True si:ch73-374l24.1
TU1355055 other upstream 2288713 54448883 ~ 54450020 (-) True G1188147
TU1355033 other upstream 2305363 54465533 ~ 54470838 (-) True G1188127

Expression Profile