RNA id: XR_005035590.1


Basic Information

Item Value
RNA id XR_005035590.1
length 2747
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC110538721
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 52186557 ~ 52189703 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCAGTGTGTTTGGACCGCGACGCGATGCCAGTGTCTGTCTACTTCTTCATGCCACCTGAGGACAGCTTCTCTCAACCAGTCTCCTTCACTGCTGCACCCTCTGATACAGCAGGCACagccccctacacacacacacacacacacacacacacacacacacacacacacacacacacacttattatctacacatagacacataccaacacacgcacacaggatCCCATGATTCCCACCAGTCCAATCCTCGAAGACGACACACCTAATATGGGATCTCCATCTCCAGCCTCCATACACCTCCACCAGCCCTAGCCCCATTTCCCTACAGCAGGCCATGTACCCCAtcccccagccccagtccccacaCACCAATATAGACCTCTTTTCTTTTCCCATATCACACCTCCACCCAACCTAACAACTGTACACAGCAGGCCTCATCCTAAAGTCCCAATGCAATACTTCCAACAgcccattccactgattccaggCCTGTTCTGTAGGCCCAACATCACGCCTCCACCGGATCCAATACCAGCAGGCTGTCTGCCCAGCTCTGTGCCTGAGATCAGGGGGTGCCTCTCTATAGACCAACTCTCTATAGTAGTCTTTTCACTCCAGGGATTTAGTTCATACAGTGCTACTGTAGGTCAGAACACTCCAGGGGTTTAGttcatacagtactactgtaggtcagaacactccaggggtttagtttatacagtactactgtaggtcagaacactccaggggtttagttcatacagtactactgtaggtcagaacactccaggggtttagttcatacagtactacagtaggtCAGAACACTTCAGGGGTTTAGttcatacagtactactgtaggtcagaacactccaggggtttagttcatacagtgctactgtaggtcagaacactccaggggtttagttcatacagtactactgtaggtcagaacactccaggcgtttagttcatacagtactactgtaggtcagaacactccaggggtttagtttatacagtactactgtaggtCAGAACACTCCAGGGGTTTAGTTCATACGGTGCTACTGTAGGTCAGAAAACTCCAGGGGTTTAGttcatacagtactactgtaggtCAGAACACTCCAGGGGTTTAGTTCATACAGTGCTACTATAGTTCAGAACACTCCAGGGGTTTAGttcatacagtactactgtaggCCAGAACACTCCAAGGGTTTAGTTCATACAGTGCTACTATAGTTCAGAACACTCCAGGGGTTTTGttcatacagtactactgtaggtcaggggtttagttcatacagtgctactgtaggtcagaacactccaggggtttagttcatacagtactactgtaggtcagaacactccaggggtttagttcatacagtgctactgtaggtcagaacactccaggggtttagttcatacagtactactgtaggtcagaacactccaggggtttagttcatacagtactactgtaggtCAGAACACTCCAGGGGTTTAGTTCATACAGTGCTACTGTAGGTCAGAACACTCCAGGGTTTTAGTTCATACAGTGCTACTGTAGGTCAGAACACTCCAGGGGTTTAGttcatacagtactactgtaggtcagaacactccaggggtttagttcatacagtactactgttggtcagaacactccaggggtttagttcatacagtactactgtaggtCAGAACACTCAAGGGTTTTAGTTCATACAGTGCTACTGTAGGTCGGAACACTCCAGGGGTTTAGTTCATACAGTGCTACTATAGTTCAGAACACTCCAGGGGTTTAGttcatacagtactactgtaggtCAGGGGTTTAGTTCATACAGTGCTACTATAGTTCAGAACACTCCAGGGGTTTAGttcatacagtactactgtaggtCAGGGGTTTAGTTCAGACATTACTACTGTAGGTCAGAACACTCCAGGGGTTTAGTTCATACAGTGCTACTATAGTTCAGAACACTCCAGGGGTTTAGttcatacagtactactgtaggtCAGGGGTTTAGTTCAGACATTACTACTGTAGGTCAGAACACTCCAGGGGTTTAGttcatacagtactactgtaggtCAGGGGTTTAGTTCAGACAGTACTACTGTAGGTCAGAACACTCCAGGGGTTTAGTTCAGACAGTACTACTGTAGGTCAGAACACTCCAGGGGTTTAGttcatacagtactactgtaggtcagaacaccccaggggtttagttcatacagtactactgtaggtcagaacactccaggggtatagttcatacagtgctactgtaggtcagaacactccaggggtttagttcatacagtactactgttgGTCAGAACACTCCAGGGGTTTAGttcatacagtactactgtaggtcagaacactccaggggtttagttcatacagtgctactgtaggtcagaacactccaggggtttagttcatacagtactactgttggtcagaacactccaggggtttagttcatacagtactactgtaggtCAGAACACTCAAGGGTTTTAGTTCATACAGTGCTACTGTAGGTCGGAACACTCCAGGGGTTTAGTTCATACAGTGCTACTATAGTTCAGAACACTCCAGGGGTTTAGttcatacagtactactgtaggtcaggggtttagttcatacagtactactgtaggtcagaacactccaggggtttagttcatacagtgctactgtaggtcagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1353035 lncRNA downstream 26387 52155641 ~ 52160170 (-) False LOC110485216
TU1353037 lncRNA downstream 26387 52155641 ~ 52160170 (-) False LOC110485216
TU1353039 lncRNA downstream 26387 52155641 ~ 52160170 (-) False LOC110485216
TU1353040 lncRNA downstream 26387 52155641 ~ 52160170 (-) False LOC110485216
TU1353041 lncRNA downstream 26387 52155641 ~ 52160170 (-) False LOC110485216
TU1353094 lncRNA upstream 17159 52206862 ~ 52214888 (-) True G1186481
TU1353162 lncRNA upstream 134682 52324385 ~ 52399386 (-) True G1186535
TU1353181 lncRNA upstream 157921 52347624 ~ 52370137 (-) True G1186547
TU1353164 lncRNA upstream 199115 52388818 ~ 52393251 (-) True G1186536
TU1353201 lncRNA upstream 211241 52400944 ~ 52402441 (-) True G1186562
XR_005035767.1 mRNA downstream 84600 52100885 ~ 52101957 (-) True LOC118938556
XM_036941454.1 mRNA downstream 579555 51592159 ~ 51607002 (-) True LOC110486749
XM_021558576.2 mRNA downstream 584945 51592159 ~ 51601612 (-) False LOC110486749
XM_021558575.2 mRNA downstream 584946 51592159 ~ 51601611 (-) False LOC110486749
XM_021558579.2 mRNA downstream 600966 51581861 ~ 51585591 (-) False LOC110486760
XM_036941458.1 mRNA upstream 225616 52415319 ~ 52430034 (-) False LOC110486769
XM_036941459.1 mRNA upstream 225616 52415319 ~ 52430034 (-) False LOC110486769
XM_036941460.1 mRNA upstream 225616 52415319 ~ 52430034 (-) False LOC110486769
XM_036941461.1 mRNA upstream 225616 52415319 ~ 52430034 (-) True LOC110486769
XR_005035593.1 mRNA upstream 540675 52730378 ~ 52741276 (-) False LOC110486776
TU1352962 other downstream 155897 52025918 ~ 52030660 (-) True G1186381
TU1352963 other downstream 157583 51924963 ~ 52028974 (-) False G1186381
TU1352758 other downstream 175346 52010690 ~ 52011211 (-) True G1186216
TU1352690 other downstream 696316 51489777 ~ 51490241 (-) True G1186154
TU1352611 other downstream 812603 51352309 ~ 51373954 (-) True G1186075
TU1353318 other upstream 469628 52659331 ~ 52659809 (-) True G1186670
TU1354707 other upstream 1417321 53607024 ~ 53637813 (-) True mosmoa
TU1354775 other upstream 1616941 53806644 ~ 53810757 (-) True si:ch73-374l24.1
TU1355055 other upstream 2259180 54448883 ~ 54450020 (-) True G1188147
TU1355033 other upstream 2275830 54465533 ~ 54470838 (-) True G1188127

Expression Profile